Rroxscaffold_7G00191680

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008607
Physical Location & Seq
Reverse (-)
32369007 .. 32372880
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191680.1

Sequence Viewer

Length: 1887 bp
ATGCTTAGTCTTGATGATGCCAACAAGAGAAGGCCCCAGAGAAATAAAGTTGTCAAAGATGTAGAAAAGTCCCTTAACACTCCTGCTCAAGATAGAAGTCTAAACTGCAAGCCCACCTTGAAACTTGTCTTGGCTGTTATAATAGTAGGGACTTTTGCGACACTCTCATTCTCTCCAGTTGTTCATATTGTAGATCATCGATCCAGTTCTGAATCTCGGCTAACTTCTGAACACAGATTGACAAGAGAGAGTGCTGCTGCAGATTTACATTACGTATCATCTTTAGACATTAATTGGTATGAAATTTCAGATGCTGTTGAGAAACTGACTGACGTAAAAGATTATCAGGGAGTTGGCCTATTGAACTTTAATGACGACGAGATTGACCATTGGAAGGAGCTCTTGCCAGATGCAGAGCATATTGTTCTACACCTCGACCATGTGTCAAACAACATAACATGGGACTCCTTGTACCCTGAATGGATAGATGAAGAAGAAGATTTTGAAGTTCCTACTTGTCCCTCTCTACCAAAGCTTAAGATTCCTGGAAAACCACGGGTTGATCTGGTTGCTGTCAAGCTTCCCTGTAACAACTCAGGCAGTTGGTCAAGAGATGTAGCTCGTTTGCATTTGCAGCTTGAAGCAGCAAGGCTTGCTGCCTCTTCCAAAGGGTATCACCAAGTGCATGTGCTTTTGGTGACTGATTGCTTCCCAATCCCAAATTTATTCACCGGCAAAGAGCTTGTTATACGTAGAGGGAATGCCTGGCTTTATGGTCCAAACCTGAATACATTGAGAGATAAGCTGCAGCTCCCCGTAGGTTCATGTGAACTAGCAGTTCCTTTAAAGGCTAAAGAACATTTTCACTCGGAAAGAGCCCATCGAGAAGCATATGCAACAATCCTGCACTCTGCCAATTTATATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATTCGTATGTCTGGTTCAACACGAGATCTTGTCATACTTGTTGACGAAACCATCACTGAGTATCATCGAGAAGGATTGGCAGCTGCTGGGTGGAAGATCCACACAATCCAAAGAATCAGAAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTGACTGATTATGACAAGATCATTTTCATTGATGCTGACATGCTTATACTGAGGAATATTGATTTCCTATTTGAGATGCCAGAAATATCAGCCACAGGAAATAATGGTTCTTTGTTCAACTCAGGTGTGATGGTTGTCGAACCATCCAATTTTACATTCCAGCTGCTCATGGATCATATCAACGAGATTGTTTCCTACAATGGTGGGGACCAGGGGTATCTGAATGAGATATTCACATGGTGGCACAGGATTCCAAAACATATGAACTTCTTGAAACACTTTTGGGAAGGTGATGAGCCGGAGAAAAAAGAAAGGAAAACTCACCTCTTTCAAGCTGATCCTCCGATCCTCTACGTCCTCCATTATCTGGGTAATAAGCCATGGCTTTGCTTCCGCGACTATGACTGCAACTGGAATGTGGATTTTTTGCAGGAGTTTGCGAGTGATGTTGCACATAAAAGGTGGTGGAAAGTGCATGATGCTATGCCAGGAAACTTGCAAAAGTTCTGTTTGCTTAGGTCCAAGCAGAAGGCGGCACTAGAGTGGGATCGGAGGCAAGCTGAGAAAGCAAATTACACTGATGGTCATTGGAAAATTAAGATAAAGGACAAGCGTTTGAAGACCTGCTTTGAGGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAAAAGAATTGGACAGATAATGCTACTGTTACTCTGTCACCACCTGCACTTACTACTGCATCTGTATCTTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

628

Amino Acids

72.41

Weight (kDa)

6.14

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 302 - 508 8.9e-14 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AarI CACCTGC 1 cut(s) 1861
Acc36I ACCTGC 2 cut(s) 1769, 1861
AccB7I CCANNNNNTGG 1 cut(s) 1504
AccII CGCG 1 cut(s) 1533
AciI CCGC 2 cut(s) 1531, 1670
AclWI GGATC 6 cut(s) 195, 1045, 1317, 1469, 1477, 1692
AcsI RAATTY 3 cut(s) 303, 721, 1121
AdeI CACNNNGTG 2 cut(s) 682, 1377
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 394, 1504
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 9 cut(s) 121, 364, 506, 641, 972, 1255, 1411, 1469, 1756
AhdI GACNNNNNGTC 1 cut(s) 442
AjnI CCWGG 4 cut(s) 544, 764, 1347, 1624
AjuI GAANNNNNNNTTGG 4 cut(s) 113, 145, 1277, 1309
AleI CACNNNNGTG 2 cut(s) 1678, 1806
Alw21I GWGCWC 1 cut(s) 402
AlwI GGATC 6 cut(s) 195, 1045, 1317, 1469, 1477, 1692
AlwNI CAGNNNCTG 2 cut(s) 314, 1040
AoxI GGCC 2 cut(s) 32, 355
ApoI RAATTY 3 cut(s) 303, 721, 1121
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 861
AspS9I GGNCC 4 cut(s) 33, 776, 1345, 1656
AsuHPI GGTGA 7 cut(s) 668, 709, 721, 1439, 1451, 1820, 1839
AvaII GGWCC 3 cut(s) 776, 1345, 1656
BanII GRGCYC 2 cut(s) 402, 880
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 1763
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 5 cut(s) 888, 1013, 1261, 1288, 1712
BciT130I CCWGG 4 cut(s) 546, 766, 1349, 1626
BfaI CTAG 2 cut(s) 833, 1676
BfmI CTRYAG 4 cut(s) 258, 806, 942, 1114
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 2 cut(s) 1769, 1861
BglII AGATCT 1 cut(s) 979
Bme1390I CCNGG 4 cut(s) 546, 766, 1349, 1626
Bme18I GGWCC 3 cut(s) 776, 1345, 1656
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgT120I GGNCC 4 cut(s) 33, 776, 1345, 1656
BmiI GGNNCC 3 cut(s) 35, 934, 1346
BmrFI CCNGG 4 cut(s) 546, 766, 1349, 1626
BmrI ACTGGG 1 cut(s) 1813
BmsI GCATC 7 cut(s) 7, 301, 400, 1159, 1203, 1606, 1877
BmuI ACTGGG 1 cut(s) 1813
BpiI GAAGAC 1 cut(s) 1763
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 1652
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 199
BsaAI YACGTR 2 cut(s) 274, 752
BsaJI CCNNGG 3 cut(s) 554, 1348, 1517
BsaXI ACNNNNNCTCC 2 cut(s) 1778, 1808
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 1504
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 4 cut(s) 176, 204, 1553, 1808
Bse3DI GCAATG 1 cut(s) 936
BseBI CCWGG 4 cut(s) 546, 766, 1349, 1626
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 554, 1348, 1517
BseGI GGATG 1 cut(s) 1280
BseLI CCNNNNNNNGG 2 cut(s) 394, 1504
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 6 cut(s) 609, 962, 1002, 1178, 1272, 1689
BseNI ACTGG 4 cut(s) 176, 204, 1553, 1808
BseYI CCCAGC 1 cut(s) 1040
BsgI GTGCAG 2 cut(s) 890, 1839
Bsh1236I CGCG 1 cut(s) 1533
BshFI GGCC 2 cut(s) 34, 357
BshVI ATCGAT 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 732, 1436
BslFI GGGAC 5 cut(s) 55, 163, 476, 504, 1358
BslI CCNNNNNNNGG 2 cut(s) 394, 1504
BsmFI GGGAC 5 cut(s) 55, 163, 476, 504, 1358
BsmI GAATGC 2 cut(s) 766, 954
BsnI GGCC 2 cut(s) 34, 357
Bsp1286I GDGCHC 2 cut(s) 402, 880
Bsp19I CCATGG 1 cut(s) 1517
BspACI CCGC 2 cut(s) 1531, 1670
BspANI GGCC 2 cut(s) 34, 357
BspCNI CTCAG 6 cut(s) 608, 961, 1003, 1179, 1271, 1690
BspDI ATCGAT 1 cut(s) 199
BspFNI CGCG 1 cut(s) 1533
BspLI GGNNCC 3 cut(s) 35, 934, 1346
BspMAI CTGCAG 3 cut(s) 262, 810, 946
BspMI ACCTGC 2 cut(s) 1769, 1861
BspPI GGATC 6 cut(s) 195, 1045, 1317, 1469, 1477, 1692
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 936
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 4 cut(s) 176, 204, 1553, 1808
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 3 cut(s) 554, 1348, 1517
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 1517
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 4 cut(s) 546, 766, 1349, 1626
Bst4CI ACNGT 1 cut(s) 1837
Bst6I CTCTTC 1 cut(s) 667
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 653
BstBAI YACGTR 2 cut(s) 274, 752
BstC8I GCNNGC 3 cut(s) 110, 654, 1695
BstDEI CTNAG 8 cut(s) 5, 595, 948, 1011, 1187, 1258, 1652, 1698
BstDSI CCRYGG 2 cut(s) 554, 1517
BstF5I GGATG 1 cut(s) 1280
BstFNI CGCG 1 cut(s) 1533
BstMWI GCNNNNNNNGC 4 cut(s) 634, 653, 941, 1703
BstNI CCWGG 4 cut(s) 546, 766, 1349, 1626
BstNSI RCATGY 3 cut(s) 689, 1180, 1795
BstSCI CCNGG 4 cut(s) 544, 764, 1347, 1624
BstSFI CTRYAG 4 cut(s) 258, 806, 942, 1114
BstSNI TACGTA 2 cut(s) 274, 752
BstUI CGCG 1 cut(s) 1533
BstV2I GAAGAC 1 cut(s) 1763
BstX2I RGATCY 2 cut(s) 979, 1050
BstYI RGATCY 2 cut(s) 979, 1050
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 2 cut(s) 34, 357
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 2 cut(s) 554, 1517
BtsCI GGATG 1 cut(s) 1280
BtsIMutI CAGTG 3 cut(s) 1008, 1713, 1801
BveI ACCTGC 2 cut(s) 1769, 1861
Cac8I GCNNGC 3 cut(s) 110, 654, 1695
CaiI CAGNNNCTG 2 cut(s) 314, 1040
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 4 cut(s) 33, 776, 1345, 1656
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 1 cut(s) 472
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 8 cut(s) 5, 595, 948, 1011, 1187, 1258, 1652, 1698
DraI TTTAAA 1 cut(s) 846
DraIII CACNNNGTG 2 cut(s) 682, 1377
DriI GACNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 667
Eam1105I GACNNNNNGTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 667
Ecl136II GAGCTC 1 cut(s) 400
Eco105I TACGTA 2 cut(s) 274, 752
Eco130I CCWWGG 1 cut(s) 1517
Eco24I GRGCYC 2 cut(s) 402, 880
Eco47I GGWCC 3 cut(s) 776, 1345, 1656
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 4 cut(s) 544, 764, 1347, 1624
EcoT14I CCWWGG 1 cut(s) 1517
EcoT38I GRGCYC 2 cut(s) 402, 880
ErhI CCWWGG 1 cut(s) 1517
FalI AAGNNNNNCTT 6 cut(s) 101, 133, 386, 418, 1748, 1780
FaqI GGGAC 5 cut(s) 55, 163, 476, 504, 1358
FauNDI CATATG 2 cut(s) 892, 1398
FokI GGATG 1 cut(s) 1267
FriOI GRGCYC 2 cut(s) 402, 880
FspBI CTAG 2 cut(s) 833, 1676
GsaI CCCAGC 1 cut(s) 1044
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 34, 357
HapII CCGG 2 cut(s) 732, 1436
HincII GTYRAC 2 cut(s) 997, 1140
HindII GTYRAC 2 cut(s) 997, 1140
HindIII AAGCTT 2 cut(s) 533, 578
HinfI GANTC 5 cut(s) 212, 464, 541, 1068, 1387
HpaII CCGG 2 cut(s) 732, 1436
HphI GGTGA 7 cut(s) 668, 709, 721, 1439, 1451, 1820, 1839
Hpy166II GTNNAC 3 cut(s) 830, 997, 1140
Hpy188I TCNGA 9 cut(s) 211, 229, 310, 871, 951, 1073, 1359, 1482, 1689
Hpy188III TCNNGA 7 cut(s) 11, 89, 609, 884, 1022, 1408, 1884
Hpy8I GTNNAC 3 cut(s) 830, 997, 1140
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 5 cut(s) 24, 388, 1019, 1418, 1660
HpyCH4III ACNGT 1 cut(s) 1837
HpyCH4IV ACGT 4 cut(s) 273, 333, 751, 1491
HpyF10VI GCNNNNNNNGC 4 cut(s) 634, 653, 941, 1703
HpyF3I CTNAG 8 cut(s) 5, 595, 948, 1011, 1187, 1258, 1652, 1698
HpySE526I ACGT 4 cut(s) 273, 333, 751, 1491
LmnI GCTCC 3 cut(s) 397, 816, 932
LweI GCATC 7 cut(s) 7, 301, 400, 1159, 1203, 1606, 1877
MaeI CTAG 2 cut(s) 833, 1676
MaeII ACGT 4 cut(s) 273, 333, 751, 1491
MaeIII GTNAC 4 cut(s) 587, 697, 1837, 1845
MboII GAAGA 8 cut(s) 503, 506, 509, 654, 1060, 1768, 1869, 1872
MflI RGATCY 2 cut(s) 979, 1050
MhlI GDGCHC 2 cut(s) 402, 880
MluCI AATT 9 cut(s) 292, 303, 721, 916, 1121, 1285, 1708, 1731, 1816
MlyI GAGTC 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 6 cut(s) 75, 291, 369, 537, 845, 1734
MslI CAYNNNNRTG 3 cut(s) 959, 1678, 1806
MspA1I CMGCKG 2 cut(s) 1037, 1300
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 732, 1436
MspR9I CCNGG 4 cut(s) 546, 766, 1349, 1626
Mva1269I GAATGC 2 cut(s) 766, 954
MvaI CCWGG 4 cut(s) 546, 766, 1349, 1626
MvnI CGCG 1 cut(s) 1533
MwoI GCNNNNNNNGC 4 cut(s) 634, 653, 941, 1703
NcoI CCATGG 1 cut(s) 1517
NdeI CATATG 2 cut(s) 892, 1398
NlaIV GGNNCC 3 cut(s) 35, 934, 1346
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 697, 1845
NspI RCATGY 3 cut(s) 689, 1180, 1795
OliI CACNNNNGTG 2 cut(s) 1678, 1806
PaqCI CACCTGC 1 cut(s) 1861
PctI GAATGC 2 cut(s) 766, 954
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 4 cut(s) 212, 541, 1068, 1387
PflMI CCANNNNNTGG 1 cut(s) 1504
PfoI TCCNGGA 1 cut(s) 544
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Ppu21I YACGTR 2 cut(s) 274, 752
PshBI ATTAAT 1 cut(s) 291
PsiI TTATAA 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 4 cut(s) 544, 764, 1347, 1624
PspFI CCCAGC 1 cut(s) 1040
PspGI CCWGG 4 cut(s) 544, 764, 1347, 1624
PspN4I GGNNCC 3 cut(s) 35, 934, 1346
PspPI GGNCC 4 cut(s) 33, 776, 1345, 1656
PsrI GAACNNNNNNTAC 2 cut(s) 952, 984
PstI CTGCAG 3 cut(s) 262, 810, 946
PstNI CAGNNNCTG 2 cut(s) 314, 1040
PsuI RGATCY 2 cut(s) 979, 1050
PvuII CAGCTG 2 cut(s) 1037, 1300
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 3 cut(s) 959, 1678, 1806
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 6 cut(s) 75, 291, 369, 537, 845, 1734
Sau96I GGNCC 4 cut(s) 33, 776, 1345, 1656
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 4 cut(s) 546, 766, 1349, 1626
SduI GDGCHC 2 cut(s) 402, 880
SfaNI GCATC 7 cut(s) 7, 301, 400, 1159, 1203, 1606, 1877
SfcI CTRYAG 4 cut(s) 258, 806, 942, 1114
SinI GGWCC 3 cut(s) 776, 1345, 1656
SmiMI CAYNNNNRTG 3 cut(s) 959, 1678, 1806
SmlI CTYRAG 2 cut(s) 87, 536
SmoI CTYRAG 2 cut(s) 87, 536
SnaBI TACGTA 2 cut(s) 274, 752
Sse9I AATT 9 cut(s) 292, 303, 721, 916, 1121, 1285, 1708, 1731, 1816
SsiI CCGC 2 cut(s) 1531, 1670
SspI AATATT 1 cut(s) 1195
SspMI CTAG 2 cut(s) 833, 1676
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 544, 764, 1347, 1624
StyI CCWWGG 1 cut(s) 1517
TaaI ACNGT 1 cut(s) 1837
TaiI ACGT 4 cut(s) 276, 336, 754, 1494
TaqI TCGA 5 cut(s) 199, 435, 883, 1021, 1275
TasI AATT 9 cut(s) 292, 303, 721, 916, 1121, 1285, 1708, 1731, 1816
TauI GCSGC 1 cut(s) 1673
TfiI GAWTC 4 cut(s) 212, 541, 1068, 1387
Tru1I TTAA 6 cut(s) 75, 291, 369, 537, 845, 1734
Tru9I TTAA 6 cut(s) 75, 291, 369, 537, 845, 1734
TscAI CASTG 3 cut(s) 1015, 1720, 1808
TseFI GTSAC 2 cut(s) 697, 1845
Tsp45I GTSAC 2 cut(s) 697, 1845
TspDTI ATGAA 7 cut(s) 173, 315, 504, 813, 1119, 1153, 1415
TspGWI ACGGA 1 cut(s) 1115
TspRI CASTG 3 cut(s) 1015, 1720, 1808
Van91I CCANNNNNTGG 1 cut(s) 1504
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 776, 1345, 1656
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 3 cut(s) 303, 721, 1121
XceI RCATGY 3 cut(s) 689, 1180, 1795
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 2 cut(s) 833, 1676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.