Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008607

Physical Location & Seq

Genomic Coordinates Forward (+)

18260535 .. 18263561

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1114500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGAGGTTCCTCCCCAACTCCCATTGAGCCCCGACACCGCCTTTCTACTTCTGCCAGGTCACTACCCTTCTCTCTCTTGACGACTCTAACAAAAGAAGGCCCCAGAGGAACAAAGATTTTAAAGATATTTGAGAAGTTCCTCCACGTTCCCGTGCAAGATAGAACTTTGAACTGCAAGCCCACCTTGAAGCTTGTGTTGGCTGTTATTTTATTGGGGACTTTTCTCACGCTTATCTTCTCTCCTGGTGTTTATCATTCAGATGATAAATCCCGTTCCATATCTCAGTATATCCCTGATTATCAGGGAATTGGCTTGTTAAACTTTAATGATGCTGAGATTGACCATTGGAAGGAGCTGTTGCCAGATTGTGAGCATGTTGTTCTACGCCTCAATCATGCGTCGAACAACATAACATGGGAAACCCTATTCCCTGAATGGATAGATGAAGAGGAAGACTTTGAAGTTCCTACTTGTCCCTCCCTACCAAAGCTTCAGATTCCTGGAAAACCAAGGCTTGATCTGATTGCTGTGAAGCTTCCCTGCAACAAGTCAGGCAGCTGGTCAAGAGATGTGGCTCGGTTGCACTTGCAGCTTGAAGCAGCAAGGCTGGCTGCAGCTTCCAAAGCGTATCACCCAGTGCATGTGCTTTTGGTGACAGACTGTTTCCCAATCCCAAATTTGTTCACTTGCAAAGAGCTTGTCAGACGGGAAGGGAATGTATGGCTTTATGAACCAAAACTGAATACGTTGAGAGATAAGCTACAGCTCCCTGTAGGTTCATGTGAACTTTCAGTTCCTCTCACGGCTAAAGAAAGCTTTTACTCGGAAAGAGCCCACAGAGAAGCATATGCAACAATCCTACATTCTGCCCATGTGTATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATCCGTATGTCTGGTTCAACACGAGATCTTGTAATACTTGTTGATGAAACAATCAGTGAGTATCATCGTGGAGGGTTGGCAGCTGCTGGGTGGAAGATCCACACAATCCAAAGAATCAGGAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTAACTGATTATGACAAGATCATTTCATTGATGCTGACATGCTTATACTTAGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

385

Amino Acids

43.57

Weight (kDa)

8.03

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77130
fragaria_vesca	FvH4_2g14610
malus_domestica	MD05G1016200.v1.1 MD10G1015800.v1.1 MD10G1015900.v1.1 MD12G1114500.v1.1
prunus_persica	Prupe.8G019500_v2.0.a1 Prupe.8G019500_v2.0.a1 Prupe.8G019600_v2.0.a1
pyrus_communis	pycom05g00890 pycom05g00900 pycom10g01030
rosa_chinensis	RchiOBHm_Chr6g0277081
rosa_laevigata	RLG00000013338
rosa_multiflora	Rmu_sc0000206.1_g000001 Rmu_sc0000656.1_g000002
rosa_roxburghii	Rroxscaffold_7G00191680
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216200 Rh6BG220800 Rh6CG223600 Rh6DG213200
rosa_wichuraiana	Rw6G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	1003
AcsI	RAATTY	2 cut(s)	679, 1079
AcuI	CTGAAG	1 cut(s)	479
AdeI	CACNNNGTG	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	5 cut(s)	172, 190, 464, 599, 930
AjnI	CCWGG	3 cut(s)	56, 244, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AlwI	GGATC	1 cut(s)	1003
AlwNI	CAGNNNCTG	1 cut(s)	998
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	9 cut(s)	558, 592, 602, 614, 617, 899, 902, 992, 995
ApoI	RAATTY	2 cut(s)	679, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	687, 719
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	626, 667
BanII	GRGCYC	2 cut(s)	33, 838
BauI	CACGAG	1 cut(s)	933
BbsI	GAAGAC	1 cut(s)	462
BbvI	GCAGC	9 cut(s)	570, 601, 604, 614, 629, 886, 914, 982, 1004
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	3 cut(s)	58, 246, 504
BfmI	CTRYAG	5 cut(s)	615, 764, 774, 900, 1072
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	9 cut(s)	559, 593, 603, 615, 618, 900, 903, 993, 996
BlsI	GCNGC	9 cut(s)	560, 594, 604, 616, 619, 901, 904, 994, 997
Bme1390I	CCNGG	3 cut(s)	58, 246, 504
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	4 cut(s)	10, 103, 892, 1034
BmrFI	CCNGG	3 cut(s)	58, 246, 504
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	3 cut(s)	322, 921, 1116
BmuI	ACTGGG	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	3 cut(s)	58, 246, 504
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	3 cut(s)	299, 327, 920
BseNI	ACTGG	1 cut(s)	638
BseXI	GCAGC	9 cut(s)	570, 601, 604, 614, 629, 886, 914, 982, 1004
BseYI	CCCAGC	1 cut(s)	998
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	232, 462
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	232, 462
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	33, 838
Bsp143I	GATC	4 cut(s)	520, 937, 1008, 1113
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	298, 328, 919
BspLI	GGNNCC	4 cut(s)	10, 103, 892, 1034
BspMAI	CTGCAG	2 cut(s)	619, 904
BspPI	GGATC	1 cut(s)	1003
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	4 cut(s)	520, 937, 1008, 1113
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	933
Bst2UI	CCWGG	3 cut(s)	58, 246, 504
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	179, 612
BstDEI	CTNAG	4 cut(s)	285, 336, 906, 1144
BstF5I	GGATG	1 cut(s)	912
BstKTI	GATC	4 cut(s)	523, 940, 1011, 1116
BstMBI	GATC	4 cut(s)	520, 937, 1008, 1113
BstMWI	GCNNNNNNNGC	4 cut(s)	592, 611, 626, 899
BstNI	CCWGG	3 cut(s)	58, 246, 504
BstNSI	RCATGY	3 cut(s)	380, 647, 1137
BstSCI	CCNGG	3 cut(s)	56, 244, 502
BstSFI	CTRYAG	5 cut(s)	615, 764, 774, 900, 1072
BstV1I	GCAGC	9 cut(s)	570, 601, 604, 614, 629, 886, 914, 982, 1004
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	937, 1008
BstYI	RGATCY	2 cut(s)	937, 1008
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	912
BtsIMutI	CAGTG	2 cut(s)	645, 973
Cac8I	GCNNGC	2 cut(s)	179, 612
CaiI	CAGNNNCTG	1 cut(s)	998
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	390
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	7 cut(s)	377, 398, 417, 644, 783, 875, 1134
DdeI	CTNAG	4 cut(s)	285, 336, 906, 1144
DpnI	GATC	4 cut(s)	522, 939, 1010, 1115
DpnII	GATC	4 cut(s)	520, 937, 1008, 1113
DraI	TTTAAA	1 cut(s)	123
DraIII	CACNNNGTG	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	2 cut(s)	33, 838
Eco57I	CTGAAG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	3 cut(s)	56, 244, 502
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	2 cut(s)	33, 838
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	7 cut(s)	380, 401, 420, 647, 786, 878, 1137
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	2 cut(s)	232, 462
FatI	CATG	7 cut(s)	376, 397, 416, 643, 782, 874, 1133
FauNDI	CATATG	1 cut(s)	850
Fnu4HI	GCNGC	9 cut(s)	559, 593, 603, 615, 618, 900, 903, 993, 996
FokI	GGATG	1 cut(s)	899
FriOI	GRGCYC	2 cut(s)	33, 838
Fsp4HI	GCNGC	9 cut(s)	559, 593, 603, 615, 618, 900, 903, 993, 996
GluI	GCNGC	9 cut(s)	559, 593, 603, 615, 618, 900, 903, 993, 996
GsaI	CCCAGC	1 cut(s)	1002
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	390
Hin1II	CATG	7 cut(s)	380, 401, 420, 647, 786, 878, 1137
HincII	GTYRAC	1 cut(s)	1098
HindII	GTYRAC	1 cut(s)	1098
HindIII	AAGCTT	4 cut(s)	191, 491, 536, 817
HinfI	GANTC	3 cut(s)	85, 499, 1026
HpaI	GTTAAC	1 cut(s)	1098
HphI	GGTGA	2 cut(s)	626, 667
Hpy166II	GTNNAC	3 cut(s)	687, 788, 1098
Hpy188I	TCNGA	6 cut(s)	262, 498, 525, 707, 829, 909
Hpy188III	TCNNGA	3 cut(s)	79, 567, 1030
Hpy8I	GTNNAC	3 cut(s)	687, 788, 1098
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	79, 92, 346, 707
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	2 cut(s)	147, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	592, 611, 626, 899
HpyF3I	CTNAG	4 cut(s)	285, 336, 906, 1144
HpySE526I	ACGT	2 cut(s)	147, 749
Hsp92II	CATG	7 cut(s)	380, 401, 420, 647, 786, 878, 1137
KspAI	GTTAAC	1 cut(s)	1098
Kzo9I	GATC	4 cut(s)	520, 937, 1008, 1113
LmnI	GCTCC	3 cut(s)	355, 774, 890
Lsp1109I	GCAGC	9 cut(s)	570, 601, 604, 614, 629, 886, 914, 982, 1004
LweI	GCATC	3 cut(s)	322, 921, 1116
MaeII	ACGT	2 cut(s)	147, 749
MaeIII	GTNAC	2 cut(s)	60, 655
MalI	GATC	4 cut(s)	522, 939, 1010, 1115
MboI	GATC	4 cut(s)	520, 937, 1008, 1113
MboII	GAAGA	4 cut(s)	229, 461, 467, 1018
MflI	RGATCY	2 cut(s)	937, 1008
MhlI	GDGCHC	2 cut(s)	33, 838
MluCI	AATT	3 cut(s)	309, 679, 1079
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	8 cut(s)	22, 101, 152, 401, 445, 490, 810, 977
MseI	TTAA	4 cut(s)	122, 320, 327, 1097
MslI	CAYNNNNRTG	3 cut(s)	261, 879, 917
MspA1I	CMGCKG	2 cut(s)	561, 995
MspR9I	CCNGG	3 cut(s)	58, 246, 504
MvaI	CCWGG	3 cut(s)	58, 246, 504
MwoI	GCNNNNNNNGC	4 cut(s)	592, 611, 626, 899
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	4 cut(s)	520, 937, 1008, 1113
NlaIII	CATG	7 cut(s)	380, 401, 420, 647, 786, 878, 1137
NlaIV	GGNNCC	4 cut(s)	10, 103, 892, 1034
NmuCI	GTSAC	2 cut(s)	60, 655
NspI	RCATGY	3 cut(s)	380, 647, 1137
PfeI	GAWTC	2 cut(s)	499, 1026
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	9 cut(s)	560, 594, 604, 616, 619, 901, 904, 994, 997
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	56, 244, 502
PspFI	CCCAGC	1 cut(s)	998
PspGI	CCWGG	3 cut(s)	56, 244, 502
PspN4I	GGNNCC	4 cut(s)	10, 103, 892, 1034
PspPI	GGNCC	1 cut(s)	101
PsrI	GAACNNNNNNTAC	2 cut(s)	910, 942
PstI	CTGCAG	2 cut(s)	619, 904
PstNI	CAGNNNCTG	1 cut(s)	998
PsuI	RGATCY	2 cut(s)	937, 1008
PvuII	CAGCTG	2 cut(s)	561, 995
RseI	CAYNNNNRTG	3 cut(s)	261, 879, 917
SaqAI	TTAA	4 cut(s)	122, 320, 327, 1097
SatI	GCNGC	9 cut(s)	559, 593, 603, 615, 618, 900, 903, 993, 996
Sau3AI	GATC	4 cut(s)	520, 937, 1008, 1113
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	58, 246, 504
SduI	GDGCHC	2 cut(s)	33, 838
SfaNI	GCATC	3 cut(s)	322, 921, 1116
SfcI	CTRYAG	5 cut(s)	615, 764, 774, 900, 1072
SmiMI	CAYNNNNRTG	3 cut(s)	261, 879, 917
Sse9I	AATT	3 cut(s)	309, 679, 1079
SsiI	CCGC	1 cut(s)	40
StyD4I	CCNGG	3 cut(s)	56, 244, 502
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	2 cut(s)	150, 752
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	309, 679, 1079
TfiI	GAWTC	2 cut(s)	499, 1026
Tru1I	TTAA	4 cut(s)	122, 320, 327, 1097
Tru9I	TTAA	4 cut(s)	122, 320, 327, 1097
TscAI	CASTG	2 cut(s)	645, 973
TseFI	GTSAC	2 cut(s)	60, 655
TseI	GCWGC	9 cut(s)	558, 592, 602, 614, 617, 899, 902, 992, 995
Tsp45I	GTSAC	2 cut(s)	60, 655
TspDTI	ATGAA	6 cut(s)	462, 747, 771, 972, 1077, 1110
TspGWI	ACGGA	2 cut(s)	905, 1073
TspRI	CASTG	2 cut(s)	645, 973
XapI	RAATTY	2 cut(s)	679, 1079
XceI	RCATGY	3 cut(s)	380, 647, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.