Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1081668 .. 1083941

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGAAAGTATGTTGTTGTTGTAGTTGTTGTTATTACTACTAGAAATGCTTCAGTTGAATCAGCAGAAAAGATGAGAGGCCCCTCCCCTACTGCAACTCCCACTGAAACCAGACACCGCCTTTCTTCACCACCTCATGAAGACACCAACAAAAGAAGGCCGCAGAGAAACAAAGTTCTTAAAGATATTGAGAAAGCCCTCCGCTTTCACGCTCAAGAAAGAGCCTTAAACTGCAAGCTTACCTTGAAATTGGTGTTGATCGTTCTTGTATTCGGGACTTTTATGACGCTCCTTCTATCTTCTACTGTTTATAATACAGATCACCTCTCCAGCTCTGTATCTCACCTAACTTCTCAATGCAGATGGATGAAAAGGAGCGTTCCAGCGGATTTACGTTATATATCATCTTTACACATAAACTGGAGTGAACTTTTGGACTTTGTTGGAAAACTTACTCACAAAAATGATTATCGGAGAATTGGCCTATTAAACTTTAATGACAATGAAATTGACAATTGGAAGGAGCTCTTTCCAGATTCTGAGCAGGTTGTTCTGCATCTCAACTATGCACCAAACAACATAACATGGGAATCCCTCTATCCTGAATGGATAGATGAAGAACAAGAATCCGAAGTTCCTACTTGTCCCTCTCTACCAAAGCTTCTAATTCCTGAAAGTTCACCGCTTGATCTGGTTGCTGTCAAGCTTCCCTGCAACAAGTCAGGCAGTTGGTCAAGAGACGTGGCTCGTTTCCACTTGCAGCTTGAAGCAGCAAGGCTGGCTGCGTTACCGGAAGGATATCACCCAGTGCATGTGCTTTTGTTGACTGACTGCTTCCCCATTCCAAGTTTATTCACTTGCAAAGATCTTGTTAGACGTGAAGGGAATGCATGGCTCTATGGACCGAAACTTACTACCTTGAGGGAGAAGCTACAGCTCCCTGTAGGATCATGTGAGCTTGCAGTTCCTCTCAAGGCTAAAGAACATTTTGACTCGGAAAACCCCCACCGAGAAGCATATGCAACAATCCTACACTCTGCAGATGTATATGTTTGTGGAGCCATTGCTGCAGCGCAGAGCATCCGTATGGCTGGTTCAACACGAGATCTTGTGATACTGGTCGATGAAACAATCACTCAGTACCATCGGAGAGGACTGGAGGCTGCTGGGTGGAACGATCCACACAATCCAAAGAATCAGGAACCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

405

Amino Acids

45.85

Weight (kDa)

7.67

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77130
fragaria_vesca	FvH4_2g14610
malus_domestica	MD05G1016200.v1.1 MD10G1015800.v1.1 MD10G1015900.v1.1 MD12G1114500.v1.1
prunus_persica	Prupe.8G019500_v2.0.a1 Prupe.8G019500_v2.0.a1 Prupe.8G019600_v2.0.a1
pyrus_communis	pycom05g00890 pycom05g00900 pycom10g01030
rosa_chinensis	RchiOBHm_Chr6g0277081
rosa_laevigata	RLG00000013338
rosa_multiflora	Rmu_sc0000206.1_g000001 Rmu_sc0000656.1_g000002
rosa_roxburghii	Rroxscaffold_7G00191680
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216200 Rh6BG220800 Rh6CG223600 Rh6DG213200
rosa_wichuraiana	Rw6G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	535
AciI	CCGC	5 cut(s)	118, 161, 202, 386, 683
AclWI	GGATC	2 cut(s)	955, 1172
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	808
AfaI	GTAC	1 cut(s)	1142
AgsI	TTSAA	4 cut(s)	59, 247, 767, 1098
AjiI	CACGTC	2 cut(s)	742, 878
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	955, 1172
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	79, 158, 481
ApeKI	GCWGC	6 cut(s)	760, 770, 782, 1067, 1070, 1163
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	2 cut(s)	80, 902
AsuHPI	GGTGA	5 cut(s)	120, 314, 335, 672, 794
AvaII	GGWCC	1 cut(s)	902
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	1 cut(s)	1101
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	6 cut(s)	769, 772, 782, 1054, 1082, 1150
BccI	CCATC	2 cut(s)	357, 1152
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	4 cut(s)	932, 942, 1038, 1068
BfuAI	ACCTGC	1 cut(s)	535
BglII	AGATCT	2 cut(s)	865, 1105
BisI	GCNGC	7 cut(s)	161, 761, 771, 783, 1068, 1071, 1164
BlsI	GCNGC	7 cut(s)	162, 762, 772, 784, 1069, 1072, 1165
Bme18I	GGWCC	1 cut(s)	902
BmgBI	CACGTC	2 cut(s)	742, 878
BmgT120I	GGNCC	2 cut(s)	80, 902
BmiI	GGNNCC	3 cut(s)	82, 1060, 1203
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	2 cut(s)	565, 1089
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	3 cut(s)	313, 442, 1178
BpuEI	CTTGAG	3 cut(s)	198, 940, 956
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	4 cut(s)	425, 806, 1122, 1161
Bse3DI	GCAATG	1 cut(s)	1062
BseGI	GGATG	2 cut(s)	372, 1080
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	2 cut(s)	531, 1151
BseNI	ACTGG	4 cut(s)	425, 806, 1122, 1161
BseXI	GCAGC	6 cut(s)	769, 772, 782, 1054, 1082, 1150
BseYI	CCCAGC	1 cut(s)	1166
BshFI	GGCC	3 cut(s)	81, 160, 483
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	289, 630
BsmAI	GTCTC	1 cut(s)	732
BsmBI	CGTCTC	1 cut(s)	732
BsmFI	GGGAC	2 cut(s)	289, 630
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	3 cut(s)	81, 160, 483
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
BspACI	CCGC	5 cut(s)	118, 161, 202, 386, 683
BspANI	GGCC	3 cut(s)	81, 160, 483
BspCNI	CTCAG	2 cut(s)	532, 1150
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	82, 1060, 1203
BspMAI	CTGCAG	2 cut(s)	1042, 1072
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	955, 1172
BsrDI	GCAATG	1 cut(s)	1062
BsrI	ACTGG	4 cut(s)	425, 806, 1122, 1161
BssMI	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
BssSI	CACGAG	1 cut(s)	1101
Bst2BI	CACGAG	1 cut(s)	1101
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	236, 780, 960
BstDEI	CTNAG	2 cut(s)	540, 1137
BstF5I	GGATG	2 cut(s)	372, 1080
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	7 cut(s)	261, 322, 691, 868, 950, 1108, 1180
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	779, 1067
BstNSI	RCATGY	1 cut(s)	815
BstSFI	CTRYAG	4 cut(s)	932, 942, 1038, 1068
BstV1I	GCAGC	6 cut(s)	769, 772, 782, 1054, 1082, 1150
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	865, 1105
BstYI	RGATCY	2 cut(s)	865, 1105
BsuRI	GGCC	3 cut(s)	81, 160, 483
BtrI	CACGTC	2 cut(s)	742, 878
BtsCI	GGATG	2 cut(s)	372, 1080
BtsIMutI	CAGTG	2 cut(s)	102, 813
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	236, 780, 960
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	1075
Cfr13I	GGNCC	2 cut(s)	80, 902
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	1141
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	5 cut(s)	137, 585, 812, 891, 951
CviQI	GTAC	1 cut(s)	1141
DdeI	CTNAG	2 cut(s)	540, 1137
DpnI	GATC	7 cut(s)	260, 321, 690, 867, 949, 1107, 1179
DpnII	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
DraIII	CACNNNGTG	1 cut(s)	808
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	800
EcoT22I	ATGCAT	1 cut(s)	892
EcoT38I	GRGCYC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	5 cut(s)	140, 588, 815, 894, 954
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 512, 544
FaqI	GGGAC	2 cut(s)	289, 630
FatI	CATG	5 cut(s)	136, 584, 811, 890, 950
FauNDI	CATATG	1 cut(s)	1018
Fnu4HI	GCNGC	7 cut(s)	161, 761, 771, 783, 1068, 1071, 1164
FokI	GGATG	2 cut(s)	379, 1067
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	7 cut(s)	161, 761, 771, 783, 1068, 1071, 1164
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	1074
GluI	GCNGC	7 cut(s)	161, 761, 771, 783, 1068, 1071, 1164
GsaI	CCCAGC	1 cut(s)	1170
GsuI	CTGGAG	3 cut(s)	313, 442, 1178
HaeIII	GGCC	3 cut(s)	81, 160, 483
HapII	CCGG	1 cut(s)	791
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	1075
Hin1II	CATG	5 cut(s)	140, 588, 815, 894, 954
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HindIII	AAGCTT	3 cut(s)	236, 659, 704
HinfI	GANTC	6 cut(s)	59, 536, 590, 626, 992, 1195
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	5 cut(s)	120, 314, 335, 672, 794
Hpy166II	GTNNAC	3 cut(s)	428, 680, 825
Hpy188I	TCNGA	5 cut(s)	474, 541, 631, 997, 1149
Hpy188III	TCNNGA	8 cut(s)	137, 215, 274, 533, 602, 671, 735, 1199
Hpy8I	GTNNAC	3 cut(s)	428, 680, 825
HpyAV	CCTTC	5 cut(s)	150, 302, 514, 788, 875
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	3 cut(s)	394, 741, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	779, 1067
HpyF3I	CTNAG	2 cut(s)	540, 1137
HpySE526I	ACGT	3 cut(s)	394, 741, 877
Hsp92II	CATG	5 cut(s)	140, 588, 815, 894, 954
HspAI	GCGC	1 cut(s)	1073
Kzo9I	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
LmnI	GCTCC	5 cut(s)	294, 375, 523, 942, 1058
Lsp1109I	GCAGC	6 cut(s)	769, 772, 782, 1054, 1082, 1150
LweI	GCATC	2 cut(s)	565, 1089
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	3 cut(s)	394, 741, 877
MaeIII	GTNAC	1 cut(s)	786
MalI	GATC	7 cut(s)	260, 321, 690, 867, 949, 1107, 1179
MboI	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
MboII	GAAGA	4 cut(s)	117, 152, 291, 629
MfeI	CAATTG	1 cut(s)	514
MflI	RGATCY	2 cut(s)	865, 1105
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	5 cut(s)	248, 477, 507, 514, 666
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	1 cut(s)	424
Mph1103I	ATGCAT	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	4 cut(s)	180, 227, 488, 495
MslI	CAYNNNNRTG	2 cut(s)	462, 1085
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	892
MwoI	GCNNNNNNNGC	2 cut(s)	779, 1067
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
NlaIII	CATG	5 cut(s)	140, 588, 815, 894, 954
NlaIV	GGNNCC	3 cut(s)	82, 1060, 1203
NsiI	ATGCAT	1 cut(s)	892
NspI	RCATGY	1 cut(s)	815
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	5 cut(s)	59, 536, 590, 626, 1195
PkrI	GCNGC	7 cut(s)	162, 762, 772, 784, 1069, 1072, 1165
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
PsiI	TTATAA	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	1166
PspN4I	GGNNCC	3 cut(s)	82, 1060, 1203
PspPI	GGNCC	2 cut(s)	80, 902
PsrI	GAACNNNNNNTAC	2 cut(s)	1078, 1110
PstI	CTGCAG	2 cut(s)	1042, 1072
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	865, 1105
RsaI	GTAC	1 cut(s)	1142
RsaNI	GTAC	1 cut(s)	1141
RseI	CAYNNNNRTG	2 cut(s)	462, 1085
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	180, 227, 488, 495
SatI	GCNGC	7 cut(s)	161, 761, 771, 783, 1068, 1071, 1164
Sau3AI	GATC	7 cut(s)	258, 319, 688, 865, 947, 1105, 1177
Sau96I	GGNCC	2 cut(s)	80, 902
SchI	GAGTC	1 cut(s)	986
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	565, 1089
SfcI	CTRYAG	4 cut(s)	932, 942, 1038, 1068
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	2 cut(s)	462, 1085
SmlI	CTYRAG	3 cut(s)	213, 919, 971
SmoI	CTYRAG	3 cut(s)	213, 919, 971
Sse9I	AATT	5 cut(s)	248, 477, 507, 514, 666
SsiI	CCGC	5 cut(s)	118, 161, 202, 386, 683
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	3 cut(s)	397, 744, 880
TaqI	TCGA	1 cut(s)	1122
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	5 cut(s)	248, 477, 507, 514, 666
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	5 cut(s)	59, 536, 590, 626, 1195
Tru1I	TTAA	4 cut(s)	180, 227, 488, 495
Tru9I	TTAA	4 cut(s)	180, 227, 488, 495
TscAI	CASTG	2 cut(s)	109, 813
TseI	GCWGC	6 cut(s)	760, 770, 782, 1067, 1070, 1163
TspDTI	ATGAA	5 cut(s)	153, 383, 519, 630, 1140
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	2 cut(s)	109, 813
VpaK11BI	GGWCC	1 cut(s)	902
XceI	RCATGY	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.