Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1091088 .. 1094745

Gene Structure 3658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGAGAGCTTCCTCCCCAACTCCCATTGAGCACCGACACCGCCTTTCTGCTTCTGCCAGTGAAGACTGTAACAGAAGAAGGCCCCAGAGGAACAAGGATTTTAAAGATAGGAACTTGAAGCCCACCTTGAAGCTTGTGTTGGCTGTTATCATACTGGGGACTTTTCTCACACTCTTCTTCTCTCCTGGTGTTCATCATTCAGATCATAAATCCCGTTCCGTATCTAACCCAAATTCTGATGAAAGGTTGACAAAAAAGAGTGTTGCTCAAGATTTACGTTATGTATCATCTGTAGAAACTAACTGGGATGAAATTTCTGATGCTATTGAAAATCTGACGGACAAAAAGGATTATCAGGGAATTGGCCTGTTAAACTTTAATGACAATGAGATTGACCATTGGAAGGAGCTGTTGCCAGATTGTGAGCATGTTGTCCTACGCCTCAACCATGCGTCAAAAAACATAACATGGGAAACCCTGTACCCTGAATGGATAGATGAAGAGGAAGAATTTGAAGTTCCTACTTGTCCCTCTCTACCAAAGCTTCAAATTCCTGGCAAACCTCGGCTTGATCTGGTTGCTGTCAAGCTTCCCTGCAACAAGTCAGGCAGCTGGTCAAGAGATGTGGCTCGGTTGCACTTGCAGCTTGAAGCAGCAAGGCTGGCTGCAGCTTCCAAAGGGTATCACCCAGTGCATGTGCTTTTGGTGACAGACTGTTTTCCAATCCCAAATTTGTTTACTTGCAAAGAGCTTGTCAGACGGGAAGGGAATGTTTGGCTTTATGAACCAAAACTGAATACGTTGAGAGATAAGCTGCAGCTCCCTGTAGGGTCATGTGAGCTGTCAGTTCCTCTCACGGCTAAAGAAAGCTTTTACTCGGAAAGAGCCCACCGAGAAGCATATGCAACAATCATACATTCTGCCCATGTATATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATCCGTATGTCTGGTTCAACGCGAGATCTTGTAATACTTGTTGATGAAACAATCAGTGAGTATCATCGTGGAGGATTGGCAGCTGCTGGGTGGAAGGTTCACACGATCCAAAGAATCAGGAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTAACTGATTATGACAAGATCATTTTCATTGATGCTGACATGCTTATACTCAGGAACATTGACTTCCTGTTTGAGATGCCAGAAATATCAGCGACGGGAAATAATGCCACTCTGTTCAACTCAGGTGTGATGGTTATCGAACCATCAAATTGTACATTCCAGCTGCTCATGGATCATATAGATGAAATCGTCTCCTACAATGGTGGAGACCAGGGTTATTTGAATGAGGTATTTACATGGTGGCACAGGATTCCAAAACATATGAACTTCTTGAAACATTTCTGGGAAGGTGATGAGCCAGAGAAAAAGGAGAGGAAAACTCACCTCTTTGCAGCTGAACCTCCAATCCTCTACGTCCTCCATTACCTGGGAAATAAACCATGGCTTTGCTTCCGTGACTATGACTGCAATTGGAATGTGGACTTTCTGCAGGAGTTTGCCAGTAATGTCGCACATAGAAGGTGGTGGAAAGTGCATGATGCTATGCCGCAAAACTTGCAAAAGTTCTGTTTGCTTCGGTCCAAGCAGAAGGCAGCACTTGAGTGGGATCGGAGACAAGCTGAAAAAGCAAATTACAGTGATGGTCACTGGAAAATTAAGATAAAAGACAAGCGTTTAAAAACATGCTTCGAGGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAAAAGAATTGGACGGATAATGCTACTGCTACTCTGTCACCACCTGCACTTACAACTGCATCCGTCTCTTCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

632

Amino Acids

73.09

Weight (kDa)

6.61

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77130
fragaria_vesca	FvH4_2g14610
malus_domestica	MD05G1016200.v1.1 MD10G1015800.v1.1 MD10G1015900.v1.1 MD12G1114500.v1.1
prunus_persica	Prupe.8G019500_v2.0.a1 Prupe.8G019500_v2.0.a1 Prupe.8G019600_v2.0.a1
pyrus_communis	pycom05g00890 pycom05g00900 pycom10g01030
rosa_chinensis	RchiOBHm_Chr6g0277081
rosa_laevigata	RLG00000013338
rosa_multiflora	Rmu_sc0000206.1_g000001 Rmu_sc0000656.1_g000002
rosa_roxburghii	Rroxscaffold_7G00191680
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216200 Rh6BG220800 Rh6CG223600 Rh6DG213200
rosa_wichuraiana	Rw6G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1870
Acc36I	ACCTGC	1 cut(s)	1870
AccB7I	CCANNNNNTGG	1 cut(s)	1513
AccII	CGCG	1 cut(s)	985
AciI	CCGC	2 cut(s)	40, 1634
AclWI	GGATC	3 cut(s)	1063, 1326, 1701
AcsI	RAATTY	6 cut(s)	232, 312, 509, 549, 730, 1130
AdeI	CACNNNGTG	1 cut(s)	691
AfaI	GTAC	2 cut(s)	482, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	403, 1513
AjnI	CCWGG	4 cut(s)	184, 553, 1356, 1512
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AleI	CACNNNNGTG	2 cut(s)	1687, 1815
AloI	GAACNNNNNNTCC	2 cut(s)	1476, 1508
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	4 cut(s)	1342, 1347, 1693, 1888
AlwI	GGATC	3 cut(s)	1063, 1326, 1701
AlwNI	CAGNNNCTG	1 cut(s)	1049
AoxI	GGCC	2 cut(s)	80, 364
ApoI	RAATTY	6 cut(s)	232, 312, 509, 549, 730, 1130
ArsI	GACNNNNNNTTYG	4 cut(s)	738, 770, 1199, 1231
Asp700I	GAANNNNTTC	1 cut(s)	1424
AspS9I	GGNCC	2 cut(s)	81, 1665
AsuHPI	GGTGA	6 cut(s)	677, 718, 1448, 1460, 1829, 1848
AvaII	GGWCC	1 cut(s)	1665
BanII	GRGCYC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	3 cut(s)	1270, 1297, 1721
BceAI	ACGGC	1 cut(s)	873
BciT130I	CCWGG	4 cut(s)	186, 555, 1358, 1514
BcoDI	GTCTC	4 cut(s)	1342, 1347, 1693, 1888
BfmI	CTRYAG	7 cut(s)	291, 666, 815, 825, 951, 1123, 1574
BfuAI	ACCTGC	1 cut(s)	1870
BglII	AGATCT	1 cut(s)	988
Bme1390I	CCNGG	4 cut(s)	186, 555, 1358, 1514
Bme18I	GGWCC	1 cut(s)	1665
BmgT120I	GGNCC	2 cut(s)	81, 1665
BmiI	GGNNCC	3 cut(s)	83, 943, 1085
BmrFI	CCNGG	4 cut(s)	186, 555, 1358, 1514
BmrI	ACTGGG	4 cut(s)	164, 313, 683, 1822
BmsI	GCATC	6 cut(s)	310, 972, 1168, 1212, 1615, 1886
BmuI	ACTGGG	4 cut(s)	164, 313, 683, 1822
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 1450, 1482
BpuEI	CTTGAG	2 cut(s)	252, 1706
BsaBI	GATNNNNATC	1 cut(s)	1280
BsaI	GGTCTC	1 cut(s)	1347
BsaJI	CCNNGG	4 cut(s)	563, 1357, 1513, 1526
BsaXI	ACNNNNNCTCC	2 cut(s)	1787, 1817
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 1513
Bse1I	ACTGG	7 cut(s)	57, 159, 308, 689, 1587, 1739, 1817
Bse3DI	GCAATG	1 cut(s)	945
Bse8I	GATNNNNATC	1 cut(s)	1280
BseBI	CCWGG	4 cut(s)	186, 555, 1358, 1514
BseDI	CCNNGG	4 cut(s)	563, 1357, 1513, 1526
BseGI	GGATG	3 cut(s)	313, 963, 1877
BseJI	GATNNNNATC	1 cut(s)	1280
BseLI	CCNNNNNNNGG	2 cut(s)	403, 1513
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	3 cut(s)	971, 1210, 1281
BseNI	ACTGG	7 cut(s)	57, 159, 308, 689, 1587, 1739, 1817
BseYI	CCCAGC	1 cut(s)	1049
BsgI	GTGCAG	1 cut(s)	1848
Bsh1236I	CGCG	1 cut(s)	985
BshFI	GGCC	2 cut(s)	82, 366
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	172, 513
BslI	CCNNNNNNNGG	2 cut(s)	403, 1513
BsmAI	GTCTC	4 cut(s)	1342, 1347, 1693, 1888
BsmBI	CGTCTC	2 cut(s)	1342, 1888
BsmFI	GGGAC	2 cut(s)	172, 513
BsnI	GGCC	2 cut(s)	82, 366
Bso31I	GGTCTC	1 cut(s)	1347
Bsp1286I	GDGCHC	2 cut(s)	33, 889
Bsp1407I	TGTACA	1 cut(s)	1298
Bsp143I	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
Bsp19I	CCATGG	1 cut(s)	1526
BspACI	CCGC	2 cut(s)	40, 1634
BspANI	GGCC	2 cut(s)	82, 366
BspCNI	CTCAG	3 cut(s)	970, 1209, 1280
BspFNI	CGCG	1 cut(s)	985
BspLI	GGNNCC	3 cut(s)	83, 943, 1085
BspMAI	CTGCAG	4 cut(s)	670, 819, 955, 1578
BspMI	ACCTGC	1 cut(s)	1870
BspPI	GGATC	3 cut(s)	1063, 1326, 1701
BspTNI	GGTCTC	1 cut(s)	1347
BsrDI	GCAATG	1 cut(s)	945
BsrGI	TGTACA	1 cut(s)	1298
BsrI	ACTGG	7 cut(s)	57, 159, 308, 689, 1587, 1739, 1817
BssECI	CCNNGG	4 cut(s)	563, 1357, 1513, 1526
BssMI	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
BssT1I	CCWWGG	1 cut(s)	1526
Bst2UI	CCWGG	4 cut(s)	186, 555, 1358, 1514
Bst4CI	ACNGT	3 cut(s)	68, 716, 1724
Bst6I	CTCTTC	3 cut(s)	179, 495, 1891
BstAPI	GCANNNNNTGC	1 cut(s)	1642
BstAUI	TGTACA	1 cut(s)	1298
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	957, 1196, 1267
BstDSI	CCRYGG	1 cut(s)	1526
BstF5I	GGATG	3 cut(s)	313, 963, 1877
BstFNI	CGCG	1 cut(s)	985
BstKTI	GATC	7 cut(s)	205, 574, 991, 1071, 1167, 1321, 1696
BstMAI	GTCTC	4 cut(s)	1342, 1347, 1693, 1888
BstMBI	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
BstMWI	GCNNNNNNNGC	5 cut(s)	643, 662, 950, 1642, 1712
BstNI	CCWGG	4 cut(s)	186, 555, 1358, 1514
BstNSI	RCATGY	5 cut(s)	431, 698, 1189, 1773, 1804
BstSCI	CCNGG	4 cut(s)	184, 553, 1356, 1512
BstSFI	CTRYAG	7 cut(s)	291, 666, 815, 825, 951, 1123, 1574
BstUI	CGCG	1 cut(s)	985
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	82, 366
BtgI	CCRYGG	1 cut(s)	1526
BtsCI	GGATG	3 cut(s)	313, 963, 1877
BtsIMutI	CAGTG	6 cut(s)	64, 696, 1024, 1729, 1732, 1810
BveI	ACCTGC	1 cut(s)	1870
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	1049
Cfr13I	GGNCC	2 cut(s)	81, 1665
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	481, 1299
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviQI	GTAC	2 cut(s)	481, 1299
DdeI	CTNAG	3 cut(s)	957, 1196, 1267
DpnI	GATC	7 cut(s)	204, 573, 990, 1070, 1166, 1320, 1695
DpnII	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
DraI	TTTAAA	2 cut(s)	103, 1764
DraIII	CACNNNGTG	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	179, 495, 1891
EarI	CTCTTC	3 cut(s)	179, 495, 1891
Eco130I	CCWWGG	1 cut(s)	1526
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	1347
Eco47I	GGWCC	1 cut(s)	1665
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	4 cut(s)	184, 553, 1356, 1512
EcoT14I	CCWWGG	1 cut(s)	1526
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	1526
Esp3I	CGTCTC	2 cut(s)	1342, 1888
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	172, 513
FauNDI	CATATG	2 cut(s)	901, 1407
FokI	GGATG	3 cut(s)	320, 950, 1864
FriOI	GRGCYC	1 cut(s)	889
GsaI	CCCAGC	1 cut(s)	1053
HaeIII	GGCC	2 cut(s)	82, 366
HgaI	GACGC	1 cut(s)	441
HincII	GTYRAC	2 cut(s)	249, 1149
HindII	GTYRAC	2 cut(s)	249, 1149
HindIII	AAGCTT	4 cut(s)	131, 542, 587, 868
HinfI	GANTC	2 cut(s)	1077, 1396
HpaI	GTTAAC	1 cut(s)	1149
HphI	GGTGA	6 cut(s)	677, 718, 1448, 1460, 1829, 1848
Hpy166II	GTNNAC	5 cut(s)	249, 738, 1063, 1149, 1567
Hpy188I	TCNGA	8 cut(s)	202, 238, 319, 336, 758, 880, 960, 1698
Hpy188III	TCNNGA	6 cut(s)	269, 618, 1081, 1198, 1417, 1893
Hpy8I	GTNNAC	5 cut(s)	249, 738, 1063, 1149, 1567
Hpy99I	CGWCG	1 cut(s)	1243
HpyAV	CCTTC	7 cut(s)	72, 397, 758, 1051, 1427, 1599, 1669
HpyCH4III	ACNGT	3 cut(s)	68, 716, 1724
HpyCH4IV	ACGT	3 cut(s)	277, 800, 1500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	643, 662, 950, 1642, 1712
HpyF3I	CTNAG	3 cut(s)	957, 1196, 1267
HpySE526I	ACGT	3 cut(s)	277, 800, 1500
KspAI	GTTAAC	1 cut(s)	1149
Kzo9I	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
LmnI	GCTCC	3 cut(s)	406, 825, 941
LweI	GCATC	6 cut(s)	310, 972, 1168, 1212, 1615, 1886
MaeII	ACGT	3 cut(s)	277, 800, 1500
MaeIII	GTNAC	5 cut(s)	68, 706, 1541, 1730, 1854
MalI	GATC	7 cut(s)	204, 573, 990, 1070, 1166, 1320, 1695
MboI	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
MboII	GAAGA	8 cut(s)	74, 87, 166, 169, 512, 518, 1878, 1881
MfeI	CAATTG	1 cut(s)	1555
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	2 cut(s)	33, 889
MroXI	GAANNNNTTC	1 cut(s)	1424
MseI	TTAA	6 cut(s)	102, 371, 378, 1148, 1743, 1763
MslI	CAYNNNNRTG	5 cut(s)	930, 968, 1326, 1687, 1815
MspA1I	CMGCKG	4 cut(s)	612, 1046, 1309, 1481
MspR9I	CCNGG	4 cut(s)	186, 555, 1358, 1514
MunI	CAATTG	1 cut(s)	1555
MvaI	CCWGG	4 cut(s)	186, 555, 1358, 1514
MvnI	CGCG	1 cut(s)	985
MwoI	GCNNNNNNNGC	5 cut(s)	643, 662, 950, 1642, 1712
NcoI	CCATGG	1 cut(s)	1526
NdeI	CATATG	2 cut(s)	901, 1407
NdeII	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
NlaIV	GGNNCC	3 cut(s)	83, 943, 1085
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	4 cut(s)	706, 1541, 1730, 1854
NspI	RCATGY	5 cut(s)	431, 698, 1189, 1773, 1804
OliI	CACNNNNGTG	2 cut(s)	1687, 1815
PaqCI	CACCTGC	1 cut(s)	1870
PdmI	GAANNNNTTC	1 cut(s)	1424
PfeI	GAWTC	2 cut(s)	1077, 1396
PflMI	CCANNNNNTGG	1 cut(s)	1513
Psp6I	CCWGG	4 cut(s)	184, 553, 1356, 1512
PspFI	CCCAGC	1 cut(s)	1049
PspGI	CCWGG	4 cut(s)	184, 553, 1356, 1512
PspN4I	GGNNCC	3 cut(s)	83, 943, 1085
PspPI	GGNCC	2 cut(s)	81, 1665
PsrI	GAACNNNNNNTAC	2 cut(s)	961, 993
PstI	CTGCAG	4 cut(s)	670, 819, 955, 1578
PstNI	CAGNNNCTG	1 cut(s)	1049
PsuI	RGATCY	1 cut(s)	988
PvuII	CAGCTG	4 cut(s)	612, 1046, 1309, 1481
RsaI	GTAC	2 cut(s)	482, 1300
RsaNI	GTAC	2 cut(s)	481, 1299
RseI	CAYNNNNRTG	5 cut(s)	930, 968, 1326, 1687, 1815
SaqAI	TTAA	6 cut(s)	102, 371, 378, 1148, 1743, 1763
Sau3AI	GATC	7 cut(s)	202, 571, 988, 1068, 1164, 1318, 1693
Sau96I	GGNCC	2 cut(s)	81, 1665
ScrFI	CCNGG	4 cut(s)	186, 555, 1358, 1514
SduI	GDGCHC	2 cut(s)	33, 889
SfaNI	GCATC	6 cut(s)	310, 972, 1168, 1212, 1615, 1886
SfcI	CTRYAG	7 cut(s)	291, 666, 815, 825, 951, 1123, 1574
SinI	GGWCC	1 cut(s)	1665
SmiMI	CAYNNNNRTG	5 cut(s)	930, 968, 1326, 1687, 1815
SmlI	CTYRAG	2 cut(s)	267, 1685
SmoI	CTYRAG	2 cut(s)	267, 1685
SsiI	CCGC	2 cut(s)	40, 1634
StyD4I	CCNGG	4 cut(s)	184, 553, 1356, 1512
StyI	CCWWGG	1 cut(s)	1526
TaaI	ACNGT	3 cut(s)	68, 716, 1724
TaiI	ACGT	3 cut(s)	280, 803, 1503
TaqI	TCGA	2 cut(s)	1284, 1776
TaqII	GACCGA	1 cut(s)	1653
TatI	WGTACW	1 cut(s)	1298
TauI	GCSGC	1 cut(s)	1636
TfiI	GAWTC	2 cut(s)	1077, 1396
Tru1I	TTAA	6 cut(s)	102, 371, 378, 1148, 1743, 1763
Tru9I	TTAA	6 cut(s)	102, 371, 378, 1148, 1743, 1763
TscAI	CASTG	6 cut(s)	64, 696, 1024, 1729, 1739, 1817
TseFI	GTSAC	4 cut(s)	706, 1541, 1730, 1854
Tsp45I	GTSAC	4 cut(s)	706, 1541, 1730, 1854
TspGWI	ACGGA	7 cut(s)	208, 353, 956, 1124, 1529, 1847, 1870
TspRI	CASTG	6 cut(s)	64, 696, 1024, 1729, 1739, 1817
Van91I	CCANNNNNTGG	1 cut(s)	1513
VpaK11BI	GGWCC	1 cut(s)	1665
XapI	RAATTY	6 cut(s)	232, 312, 509, 549, 730, 1130
XceI	RCATGY	5 cut(s)	431, 698, 1189, 1773, 1804
XmnI	GAANNNNTTC	1 cut(s)	1424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.