RLG00000013338

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008607
Physical Location & Seq
Reverse (-)
30019155 .. 30023193
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013338

Sequence Viewer

Length: 1935 bp
ATGAGAGTGCCTTCCCCAAGTCCCGTTGAGCCCAGACACCGCCTCTCTGCTTCAGCAAGTGATGATGCCAACAAGAGAAGGGCCCAGAGAAATAAAGTTGTCAAAGATGTAGAAAAGGGCCTTAACTCTCCTGCTCAAGATAGAAGTCTAAACTGCAAGCCCACCTTGAAACTTGTCTTGGCTGTTATAATAGTGGGGACTTTTGCGACACTCTCATTCTCTCCAGTTGTTCATATTGTAGATCATCGATCCAGTTCTGAATCTCGGCTAACTTCTGAACACAGATTGACAAGAGAGAGTGCTGCTGCAGATTTACATTACGTATCATCTTTAGACATTAATTGGTACGAAATTTCAGATGCTGTTGAGAAACTGACTGACGTAAAAGATTATCAGGGAGTTGGCCTATTGAACTTTAATGACGATGAGATTGACCATTGGAAGGAGCTCTTGCCAGATGCAGAGCATATTGTTCTACACCTTGACCATGTGTCAAACAACATAACATGGGACTCCTTGTACCCTGAATGGATAGATGAAGAAGAAGATTTTGAAGTTCCTACTTGTCCCTCTCTACCAAAGCTTAAGATTCCTGGAAAACCACGGGTTGATCTGGTTGCTGTCAAGCTTCCCTGTAACAACTCAGGCAGTTGGTCAAGAGATGTAGCTCGTTTGCATTTGCAGCTTGAAGCAGCAAGGCTTGCTGCCTCTTCCAAAGGGTATCACCAAGTGCATGTGCTTTTGGTGACTGATTGCTTCCCAATCCCAAATTTATTCACCGGCAAAGAGCTTGTTATACGTAGAGGGAATGCCTGGCTTTATGGTCCAAACCTGAATACATTGAGAGAGAAGCTACAGCTCCCCGTAGGGTCATGTGAACTAGCAGTTCCTTTAAAGGCTAAAGAACATTTTCACTCCGAAAGAGCCCATCGAGAAGCTTATGCAACAATCCTGCACTCTGCCAATTTCTATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATTCGTATGTCTGGTTCAATACGAGATCTTGTCATACTTGTTGACGAAACCATCACTGAGTATCATCGAGAAGGATTGGCAGCTGCTGGGTGGAAGATCCACACAATCCAAAGAATCAGAAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTGACTGATTATGACAAGATCATTTTCATTGATGCTGACATGCTTATTCTCAGGAATATTGATTTCCTATTTGAGATGCCAGAAATATCAGCCACAGGAAATAATGGTACTTTGTTCAACTCAGGTGTGATGGTTGTCGAACCATCCAATTTTACATTCCAGCTGCTCATGGATCATATCAATGACATTGTTTCCTACAATGGTGGGGACCAGGGGTATCTGAATGAGATATTCACATGGTGGCACAGGATTCCAAAACATATGAACTTCTTGAAACACTTCTGGGAAGGTGATGAGCCGGAGAAAAAAGAAAGGAAAACTCACCTCTTTCAAGCTGATCCTCCGATCCTCTACGTCCTCCATTATCTGGGTAATAAGCCATGGCTTTGCTTCCGCGACTATGACTGCAACTGGAATGTGGATTTTTTGCAGGAGTTTGCAAGTGATGTTGCACATAAAAGGTGGTGGAAAGTGCATGATGCTATGCCAGGAAACTTGCAAAAATTCTGTTTGCTTAGGTCGAAGCAGAAGGCGGCACTAGAGTGGGATCGGAGGCAAGCTGAGAAAGCAAATTACACTGATGGTCATTGGAAAATTAAGATAAAGGACAAGCGTTTGAAGACCTGCTTTGAGGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAAAAGAATTGGACAGATAATGCTACTGTTACTCTGTCACCACCTGCACTTACTACTGCATCTATATCTTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

645

Amino Acids

74.12

Weight (kDa)

6.28

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 319 - 422 3.3e-10 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AarI CACCTGC 1 cut(s) 1909
Acc36I ACCTGC 2 cut(s) 1817, 1909
AccB7I CCANNNNNTGG 1 cut(s) 1552
AccII CGCG 1 cut(s) 1581
AciI CCGC 3 cut(s) 40, 1579, 1718
AclWI GGATC 6 cut(s) 243, 1093, 1365, 1517, 1525, 1740
AcsI RAATTY 4 cut(s) 351, 769, 1169, 1688
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 2 cut(s) 730, 1425
AfaI GTAC 3 cut(s) 347, 521, 1294
AfiI CCNNNNNNNGG 2 cut(s) 442, 1552
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 9 cut(s) 169, 412, 554, 689, 1020, 1303, 1459, 1517, 1804
AhdI GACNNNNNGTC 1 cut(s) 490
AjnI CCWGG 4 cut(s) 592, 812, 1395, 1672
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 1325, 1357
AleI CACNNNNGTG 2 cut(s) 1726, 1854
Alw21I GWGCWC 1 cut(s) 450
AlwI GGATC 6 cut(s) 243, 1093, 1365, 1517, 1525, 1740
AlwNI CAGNNNCTG 2 cut(s) 362, 1088
AoxI GGCC 3 cut(s) 81, 118, 403
ApaI GGGCCC 1 cut(s) 85
ApoI RAATTY 4 cut(s) 351, 769, 1169, 1688
AseI ATTAAT 1 cut(s) 339
Asp700I GAANNNNTTC 2 cut(s) 909, 1463
AspS9I GGNCC 5 cut(s) 81, 82, 118, 824, 1393
AsuHPI GGTGA 7 cut(s) 716, 757, 769, 1487, 1499, 1868, 1887
AvaII GGWCC 2 cut(s) 824, 1393
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 4 cut(s) 33, 85, 450, 928
BbsI GAAGAC 1 cut(s) 1811
Bbv12I GWGCWC 1 cut(s) 450
BccI CCATC 5 cut(s) 936, 1061, 1309, 1336, 1760
BciT130I CCWGG 4 cut(s) 594, 814, 1397, 1674
BfaI CTAG 2 cut(s) 881, 1724
BfmI CTRYAG 4 cut(s) 306, 854, 990, 1162
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 2 cut(s) 1817, 1909
BglII AGATCT 1 cut(s) 1027
Bme1390I CCNGG 4 cut(s) 594, 814, 1397, 1674
Bme18I GGWCC 2 cut(s) 824, 1393
BmeRI GACNNNNNGTC 1 cut(s) 490
BmgT120I GGNCC 5 cut(s) 81, 82, 118, 824, 1393
BmiI GGNNCC 3 cut(s) 83, 982, 1394
BmrFI CCNGG 4 cut(s) 594, 814, 1397, 1674
BmrI ACTGGG 1 cut(s) 1861
BmsI GCATC 7 cut(s) 55, 349, 448, 1207, 1251, 1654, 1925
BmuI ACTGGG 1 cut(s) 1861
BpiI GAAGAC 1 cut(s) 1811
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 1700
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 247
BsaAI YACGTR 2 cut(s) 322, 800
BsaJI CCNNGG 3 cut(s) 602, 1396, 1565
BsaXI ACNNNNNCTCC 2 cut(s) 1826, 1856
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1552
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 4 cut(s) 224, 252, 1601, 1856
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 4 cut(s) 594, 814, 1397, 1674
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 602, 1396, 1565
BseGI GGATG 1 cut(s) 1328
BseLI CCNNNNNNNGG 2 cut(s) 442, 1552
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 6 cut(s) 657, 1010, 1050, 1249, 1320, 1737
BseNI ACTGG 4 cut(s) 224, 252, 1601, 1856
BseSI GKGCMC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 1088
BsgI GTGCAG 2 cut(s) 938, 1887
Bsh1236I CGCG 1 cut(s) 1581
BshFI GGCC 3 cut(s) 83, 120, 405
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 2 cut(s) 780, 1484
BslFI GGGAC 5 cut(s) 6, 211, 524, 552, 1406
BslI CCNNNNNNNGG 2 cut(s) 442, 1552
BsmFI GGGAC 5 cut(s) 6, 211, 524, 552, 1406
BsmI GAATGC 2 cut(s) 814, 1002
BsnI GGCC 3 cut(s) 83, 120, 405
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 33, 85, 450, 928
Bsp19I CCATGG 1 cut(s) 1565
BspACI CCGC 3 cut(s) 40, 1579, 1718
BspANI GGCC 3 cut(s) 83, 120, 405
BspCNI CTCAG 6 cut(s) 656, 1009, 1051, 1248, 1319, 1738
BspDI ATCGAT 1 cut(s) 247
BspFNI CGCG 1 cut(s) 1581
BspLI GGNNCC 3 cut(s) 83, 982, 1394
BspMAI CTGCAG 2 cut(s) 310, 994
BspMI ACCTGC 2 cut(s) 1817, 1909
BspPI GGATC 6 cut(s) 243, 1093, 1365, 1517, 1525, 1740
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 4 cut(s) 224, 252, 1601, 1856
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 3 cut(s) 602, 1396, 1565
BssT1I CCWWGG 1 cut(s) 1565
Bst2UI CCWGG 4 cut(s) 594, 814, 1397, 1674
Bst4CI ACNGT 1 cut(s) 1885
Bst6I CTCTTC 1 cut(s) 715
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 2 cut(s) 322, 800
BstC8I GCNNGC 3 cut(s) 158, 702, 1743
BstDEI CTNAG 7 cut(s) 643, 996, 1059, 1235, 1306, 1700, 1746
BstDSI CCRYGG 2 cut(s) 602, 1565
BstF5I GGATG 1 cut(s) 1328
BstFNI CGCG 1 cut(s) 1581
BstMWI GCNNNNNNNGC 4 cut(s) 682, 701, 989, 1751
BstNI CCWGG 4 cut(s) 594, 814, 1397, 1674
BstNSI RCATGY 3 cut(s) 737, 1228, 1843
BstSCI CCNGG 4 cut(s) 592, 812, 1395, 1672
BstSFI CTRYAG 4 cut(s) 306, 854, 990, 1162
BstSLI GKGCMC 1 cut(s) 85
BstSNI TACGTA 2 cut(s) 322, 800
BstUI CGCG 1 cut(s) 1581
BstV2I GAAGAC 1 cut(s) 1811
BstX2I RGATCY 2 cut(s) 1027, 1098
BstYI RGATCY 2 cut(s) 1027, 1098
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 3 cut(s) 83, 120, 405
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 2 cut(s) 602, 1565
BtsCI GGATG 1 cut(s) 1328
BtsIMutI CAGTG 3 cut(s) 1056, 1761, 1849
BveI ACCTGC 2 cut(s) 1817, 1909
Cac8I GCNNGC 3 cut(s) 158, 702, 1743
CaiI CAGNNNCTG 2 cut(s) 362, 1088
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 5 cut(s) 81, 82, 118, 824, 1393
ClaI ATCGAT 1 cut(s) 247
Csp6I GTAC 3 cut(s) 346, 520, 1293
CviQI GTAC 3 cut(s) 346, 520, 1293
DdeI CTNAG 7 cut(s) 643, 996, 1059, 1235, 1306, 1700, 1746
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 2 cut(s) 730, 1425
DriI GACNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 715
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 448
Eco105I TACGTA 2 cut(s) 322, 800
Eco130I CCWWGG 1 cut(s) 1565
Eco24I GRGCYC 4 cut(s) 33, 85, 450, 928
Eco47I GGWCC 2 cut(s) 824, 1393
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 448
EcoO109I RGGNCCY 2 cut(s) 81, 118
EcoRII CCWGG 4 cut(s) 592, 812, 1395, 1672
EcoT14I CCWWGG 1 cut(s) 1565
EcoT38I GRGCYC 4 cut(s) 33, 85, 450, 928
ErhI CCWWGG 1 cut(s) 1565
FalI AAGNNNNNCTT 6 cut(s) 149, 181, 434, 466, 1796, 1828
FaqI GGGAC 5 cut(s) 6, 211, 524, 552, 1406
FauNDI CATATG 1 cut(s) 1446
FokI GGATG 1 cut(s) 1315
FriOI GRGCYC 4 cut(s) 33, 85, 450, 928
FspBI CTAG 2 cut(s) 881, 1724
GsaI CCCAGC 1 cut(s) 1092
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 3 cut(s) 83, 120, 405
HapII CCGG 2 cut(s) 780, 1484
HincII GTYRAC 2 cut(s) 1045, 1188
HindII GTYRAC 2 cut(s) 1045, 1188
HindIII AAGCTT 3 cut(s) 581, 626, 936
HinfI GANTC 5 cut(s) 260, 512, 589, 1116, 1435
HpaII CCGG 2 cut(s) 780, 1484
HphI GGTGA 7 cut(s) 716, 757, 769, 1487, 1499, 1868, 1887
Hpy166II GTNNAC 3 cut(s) 878, 1045, 1188
Hpy188I TCNGA 9 cut(s) 259, 277, 358, 919, 999, 1121, 1407, 1530, 1737
Hpy188III TCNNGA 7 cut(s) 137, 657, 932, 1070, 1237, 1456, 1932
Hpy8I GTNNAC 3 cut(s) 878, 1045, 1188
HpyAV CCTTC 6 cut(s) 21, 72, 436, 1067, 1466, 1708
HpyCH4III ACNGT 1 cut(s) 1885
HpyCH4IV ACGT 4 cut(s) 321, 381, 799, 1539
HpyF10VI GCNNNNNNNGC 4 cut(s) 682, 701, 989, 1751
HpyF3I CTNAG 7 cut(s) 643, 996, 1059, 1235, 1306, 1700, 1746
HpySE526I ACGT 4 cut(s) 321, 381, 799, 1539
LmnI GCTCC 3 cut(s) 445, 864, 980
LweI GCATC 7 cut(s) 55, 349, 448, 1207, 1251, 1654, 1925
MaeI CTAG 2 cut(s) 881, 1724
MaeII ACGT 4 cut(s) 321, 381, 799, 1539
MaeIII GTNAC 4 cut(s) 635, 745, 1885, 1893
MboII GAAGA 8 cut(s) 551, 554, 557, 702, 1108, 1816, 1917, 1920
MflI RGATCY 2 cut(s) 1027, 1098
MhlI GDGCHC 4 cut(s) 33, 85, 450, 928
MlyI GAGTC 1 cut(s) 506
MroXI GAANNNNTTC 2 cut(s) 909, 1463
MseI TTAA 6 cut(s) 123, 339, 417, 585, 893, 1782
MslI CAYNNNNRTG 4 cut(s) 1007, 1365, 1726, 1854
MspA1I CMGCKG 2 cut(s) 1085, 1348
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 2 cut(s) 780, 1484
MspR9I CCNGG 4 cut(s) 594, 814, 1397, 1674
Mva1269I GAATGC 2 cut(s) 814, 1002
MvaI CCWGG 4 cut(s) 594, 814, 1397, 1674
MvnI CGCG 1 cut(s) 1581
MwoI GCNNNNNNNGC 4 cut(s) 682, 701, 989, 1751
NcoI CCATGG 1 cut(s) 1565
NdeI CATATG 1 cut(s) 1446
NlaIV GGNNCC 3 cut(s) 83, 982, 1394
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 745, 1893
NspI RCATGY 3 cut(s) 737, 1228, 1843
OliI CACNNNNGTG 2 cut(s) 1726, 1854
PaqCI CACCTGC 1 cut(s) 1909
PctI GAATGC 2 cut(s) 814, 1002
PdmI GAANNNNTTC 2 cut(s) 909, 1463
PfeI GAWTC 4 cut(s) 260, 589, 1116, 1435
PflMI CCANNNNNTGG 1 cut(s) 1552
PfoI TCCNGGA 1 cut(s) 592
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Ppu21I YACGTR 2 cut(s) 322, 800
PshBI ATTAAT 1 cut(s) 339
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 4 cut(s) 592, 812, 1395, 1672
PspFI CCCAGC 1 cut(s) 1088
PspGI CCWGG 4 cut(s) 592, 812, 1395, 1672
PspN4I GGNNCC 3 cut(s) 83, 982, 1394
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 5 cut(s) 81, 82, 118, 824, 1393
PsrI GAACNNNNNNTAC 2 cut(s) 1000, 1032
PstI CTGCAG 2 cut(s) 310, 994
PstNI CAGNNNCTG 2 cut(s) 362, 1088
PsuI RGATCY 2 cut(s) 1027, 1098
PvuII CAGCTG 2 cut(s) 1085, 1348
RsaI GTAC 3 cut(s) 347, 521, 1294
RsaNI GTAC 3 cut(s) 346, 520, 1293
RseI CAYNNNNRTG 4 cut(s) 1007, 1365, 1726, 1854
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 6 cut(s) 123, 339, 417, 585, 893, 1782
Sau96I GGNCC 5 cut(s) 81, 82, 118, 824, 1393
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 4 cut(s) 594, 814, 1397, 1674
SduI GDGCHC 4 cut(s) 33, 85, 450, 928
SfaNI GCATC 7 cut(s) 55, 349, 448, 1207, 1251, 1654, 1925
SfcI CTRYAG 4 cut(s) 306, 854, 990, 1162
SinI GGWCC 2 cut(s) 824, 1393
SmiMI CAYNNNNRTG 4 cut(s) 1007, 1365, 1726, 1854
SmlI CTYRAG 2 cut(s) 135, 584
SmoI CTYRAG 2 cut(s) 135, 584
SnaBI TACGTA 2 cut(s) 322, 800
SsiI CCGC 3 cut(s) 40, 1579, 1718
SspI AATATT 1 cut(s) 1243
SspMI CTAG 2 cut(s) 881, 1724
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 4 cut(s) 592, 812, 1395, 1672
StyI CCWWGG 1 cut(s) 1565
TaaI ACNGT 1 cut(s) 1885
TaiI ACGT 4 cut(s) 324, 384, 802, 1542
TaqI TCGA 5 cut(s) 247, 931, 1069, 1323, 1706
TauI GCSGC 1 cut(s) 1721
TfiI GAWTC 4 cut(s) 260, 589, 1116, 1435
Tru1I TTAA 6 cut(s) 123, 339, 417, 585, 893, 1782
Tru9I TTAA 6 cut(s) 123, 339, 417, 585, 893, 1782
TscAI CASTG 3 cut(s) 1063, 1768, 1856
TseFI GTSAC 2 cut(s) 745, 1893
Tsp45I GTSAC 2 cut(s) 745, 1893
TspDTI ATGAA 5 cut(s) 221, 552, 1167, 1201, 1463
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 3 cut(s) 1063, 1768, 1856
Van91I CCANNNNNTGG 1 cut(s) 1552
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 824, 1393
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 4 cut(s) 351, 769, 1169, 1688
XceI RCATGY 3 cut(s) 737, 1228, 1843
XmnI GAANNNNTTC 2 cut(s) 909, 1463
XspI CTAG 2 cut(s) 881, 1724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.