TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1028800.v1.1 MD10G1018600.v1.1 |
| pyrus_communis | pycom04g04790 |
| rosa_laevigata | RLG00000030175 RLG00000030179 RLG00000030182 |
| rosa_samantha | Rh1CG065500 Rh1DG070600 |
| rosa_wichuraiana | Rw1G005370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 458 |
| AciI | CCGC | 1 cut(s) | 111 |
| AcsI | RAATTY | 5 cut(s) | 377, 507, 522, 576, 654 |
| AfaI | GTAC | 4 cut(s) | 44, 162, 198, 636 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 565, 607 |
| AgsI | TTSAA | 7 cut(s) | 61, 313, 346, 355, 632, 701, 716 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 186, 218, 473, 505 |
| AluBI | AGCT | 4 cut(s) | 11, 326, 334, 342 |
| AluI | AGCT | 4 cut(s) | 11, 326, 334, 342 |
| Alw21I | GWGCWC | 1 cut(s) | 336 |
| AoxI | GGCC | 1 cut(s) | 418 |
| ApoI | RAATTY | 5 cut(s) | 377, 507, 522, 576, 654 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 632, 664 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbsI | GAAGAC | 1 cut(s) | 49 |
| Bbv12I | GWGCWC | 1 cut(s) | 336 |
| BccI | CCATC | 2 cut(s) | 545, 559 |
| BfaI | CTAG | 5 cut(s) | 191, 252, 269, 638, 660 |
| BglII | AGATCT | 1 cut(s) | 692 |
| BmcAI | AGTACT | 2 cut(s) | 198, 636 |
| BmsI | GCATC | 3 cut(s) | 7, 463, 720 |
| BpiI | GAAGAC | 1 cut(s) | 49 |
| BpuEI | CTTGAG | 1 cut(s) | 350 |
| BsaWI | WCCGGW | 1 cut(s) | 558 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 565, 607 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseGI | GGATG | 3 cut(s) | 106, 181, 735 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 565, 607 |
| BseMII | CTCAG | 1 cut(s) | 384 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseRI | GAGGAG | 1 cut(s) | 586 |
| BshFI | GGCC | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 1 cut(s) | 336 |
| BsiSI | CCGG | 1 cut(s) | 559 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 565, 607 |
| BsmI | GAATGC | 1 cut(s) | 352 |
| BsnI | GGCC | 1 cut(s) | 420 |
| Bsp1286I | GDGCHC | 1 cut(s) | 336 |
| Bsp143I | GATC | 1 cut(s) | 692 |
| BspACI | CCGC | 1 cut(s) | 111 |
| BspANI | GGCC | 1 cut(s) | 420 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssMI | GATC | 1 cut(s) | 692 |
| BssNAI | GTATAC | 1 cut(s) | 459 |
| Bst1107I | GTATAC | 1 cut(s) | 459 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 702 |
| BstDEI | CTNAG | 2 cut(s) | 126, 393 |
| BstF5I | GGATG | 3 cut(s) | 106, 181, 735 |
| BstKTI | GATC | 1 cut(s) | 695 |
| BstMBI | GATC | 1 cut(s) | 692 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstNSI | RCATGY | 1 cut(s) | 597 |
| BstV2I | GAAGAC | 1 cut(s) | 49 |
| BstX2I | RGATCY | 1 cut(s) | 692 |
| BstYI | RGATCY | 1 cut(s) | 692 |
| BstZ17I | GTATAC | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 420 |
| BtsCI | GGATG | 3 cut(s) | 106, 181, 735 |
| CciI | TCATGA | 1 cut(s) | 13 |
| Csp6I | GTAC | 4 cut(s) | 43, 161, 197, 635 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 458, 493 |
| CviAII | CATG | 6 cut(s) | 14, 226, 278, 594, 734, 754 |
| CviJI | RGCY | 5 cut(s) | 11, 326, 334, 342, 420 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 326, 334, 342, 420 |
| CviQI | GTAC | 4 cut(s) | 43, 161, 197, 635 |
| DdeI | CTNAG | 2 cut(s) | 126, 393 |
| DpnI | GATC | 1 cut(s) | 694 |
| DpnII | GATC | 1 cut(s) | 692 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 702 |
| EarI | CTCTTC | 2 cut(s) | 99, 702 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco147I | AGGCCT | 1 cut(s) | 420 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 735 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| FaeI | CATG | 6 cut(s) | 17, 229, 281, 597, 737, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 119, 151 |
| FatI | CATG | 6 cut(s) | 13, 225, 277, 593, 733, 753 |
| FblI | GTMKAC | 1 cut(s) | 458 |
| FokI | GGATG | 3 cut(s) | 113, 188, 742 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| FspBI | CTAG | 5 cut(s) | 191, 252, 269, 638, 660 |
| HaeIII | GGCC | 1 cut(s) | 420 |
| HapII | CCGG | 1 cut(s) | 559 |
| Hin1II | CATG | 6 cut(s) | 17, 229, 281, 597, 737, 757 |
| HinfI | GANTC | 5 cut(s) | 37, 208, 530, 555, 774 |
| HpaII | CCGG | 1 cut(s) | 559 |
| Hpy166II | GTNNAC | 1 cut(s) | 459 |
| Hpy188I | TCNGA | 2 cut(s) | 394, 779 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 329, 701, 771 |
| Hpy8I | GTNNAC | 1 cut(s) | 459 |
| HpyAV | CCTTC | 4 cut(s) | 142, 254, 361, 431 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 141, 593, 615, 733 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 393 |
| Hsp92II | CATG | 6 cut(s) | 17, 229, 281, 597, 737, 757 |
| Kzo9I | GATC | 1 cut(s) | 692 |
| LpnPI | CCDG | 4 cut(s) | 185, 283, 427, 572 |
| LweI | GCATC | 3 cut(s) | 7, 463, 720 |
| MaeI | CTAG | 5 cut(s) | 191, 252, 269, 638, 660 |
| MalI | GATC | 1 cut(s) | 694 |
| MboI | GATC | 1 cut(s) | 692 |
| MboII | GAAGA | 5 cut(s) | 49, 116, 146, 386, 689 |
| MfeI | CAATTG | 1 cut(s) | 760 |
| MflI | RGATCY | 1 cut(s) | 692 |
| MhlI | GDGCHC | 1 cut(s) | 336 |
| MlyI | GAGTC | 1 cut(s) | 549 |
| MmeI | TCCRAC | 2 cut(s) | 298, 471 |
| MnlI | CCTC | 4 cut(s) | 298, 410, 458, 564 |
| Mph1103I | ATGCAT | 1 cut(s) | 735 |
| MroXI | GAANNNNTTC | 1 cut(s) | 350 |
| MseI | TTAA | 3 cut(s) | 122, 435, 443 |
| MspI | CCGG | 1 cut(s) | 559 |
| MunI | CAATTG | 1 cut(s) | 760 |
| Mva1269I | GAATGC | 1 cut(s) | 352 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NdeII | GATC | 1 cut(s) | 692 |
| NlaIII | CATG | 6 cut(s) | 17, 229, 281, 597, 737, 757 |
| NsiI | ATGCAT | 1 cut(s) | 735 |
| NspI | RCATGY | 1 cut(s) | 597 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PceI | AGGCCT | 1 cut(s) | 420 |
| PctI | GAATGC | 1 cut(s) | 352 |
| PdmI | GAANNNNTTC | 1 cut(s) | 350 |
| PfeI | GAWTC | 3 cut(s) | 37, 208, 530 |
| PleI | GAGTC | 1 cut(s) | 549 |
| PpsI | GAGTC | 1 cut(s) | 549 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| PsuI | RGATCY | 1 cut(s) | 692 |
| RsaI | GTAC | 4 cut(s) | 44, 162, 198, 636 |
| RsaNI | GTAC | 4 cut(s) | 43, 161, 197, 635 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SaqAI | TTAA | 3 cut(s) | 122, 435, 443 |
| Sau3AI | GATC | 1 cut(s) | 692 |
| ScaI | AGTACT | 2 cut(s) | 198, 636 |
| SchI | GAGTC | 1 cut(s) | 549 |
| SduI | GDGCHC | 1 cut(s) | 336 |
| SetI | ASST | 7 cut(s) | 13, 153, 265, 328, 336, 344, 449 |
| SfaNI | GCATC | 3 cut(s) | 7, 463, 720 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| SseBI | AGGCCT | 1 cut(s) | 420 |
| SsiI | CCGC | 1 cut(s) | 111 |
| SspMI | CTAG | 5 cut(s) | 191, 252, 269, 638, 660 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| StuI | AGGCCT | 1 cut(s) | 420 |
| TatI | WGTACW | 3 cut(s) | 42, 196, 634 |
| TfiI | GAWTC | 3 cut(s) | 37, 208, 530 |
| Tru1I | TTAA | 3 cut(s) | 122, 435, 443 |
| Tru9I | TTAA | 3 cut(s) | 122, 435, 443 |
| TspDTI | ATGAA | 5 cut(s) | 117, 192, 273, 387, 770 |
| XapI | RAATTY | 5 cut(s) | 377, 507, 522, 576, 654 |
| XceI | RCATGY | 1 cut(s) | 597 |
| XmiI | GTMKAC | 1 cut(s) | 458 |
| XmnI | GAANNNNTTC | 1 cut(s) | 350 |
| XspI | CTAG | 5 cut(s) | 191, 252, 269, 638, 660 |
| ZrmI | AGTACT | 2 cut(s) | 198, 636 |
| Zsp2I | ATGCAT | 1 cut(s) | 735 |