Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018880

Physical Location & Seq

Genomic Coordinates Forward (+)

12584274 .. 12585307

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCAGACTCCTCTTTTCATGCTTGTTGGAACACAAGCTATGCCATAGGCGGTATTGCGGGTGGCGAAAGTAAGGATTCATTTTGGCACATTGTTGCTCAGTGCACTGCTGCACTGCCTGAGGACAAGCTGCGATATGTTATGGGCGTTGGTTATCCATTGGACATTGTAGTTTGCAATGCTTTAGGTGCTGACATGTATGACTATGTTTATCCAACACGTACTGCTCGCTTTGGCACAGCTTTTATACCCAAGGTAATTACTTCTAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

91

Amino Acids

9.95

Weight (kDa)

6.0

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGT	PF01702	13 - 84	6e-27	Queuine tRNA-ribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018880)

Species	Orthologous Gene IDs
malus_domestica	MD05G1028800.v1.1 MD10G1018600.v1.1
pyrus_communis	pycom04g04790
rosa_laevigata	RLG00000030175 RLG00000030179 RLG00000030182
rosa_samantha	Rh1CG065500 Rh1DG070600
rosa_wichuraiana	Rw1G005370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 59
AfaI	GTAC	1 cut(s)	223
AflIII	ACRYGT	2 cut(s)	195, 218
AluBI	AGCT	3 cut(s)	39, 130, 242
AluI	AGCT	3 cut(s)	39, 130, 242
Alw21I	GWGCWC	1 cut(s)	107
Alw44I	GTGCAC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	110, 130
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	97, 117
BisI	GCNGC	2 cut(s)	111, 131
BlsI	GCNGC	2 cut(s)	112, 132
BsaAI	YACGTR	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	111, 113
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	97, 117
BsgI	GTGCAG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	51, 59
BspCNI	CTCAG	2 cut(s)	112, 112
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	99, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	97, 117
Bsu36I	CCTNAGG	1 cut(s)	120
BtsI	GCAGTG	2 cut(s)	105, 113
BtsIMutI	CAGTG	3 cut(s)	105, 107, 113
Cac8I	GCNNGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	20, 196
CviJI	RGCY	3 cut(s)	39, 130, 242
CviKI_1	RGCY	3 cut(s)	39, 130, 242
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	99, 120
Eco130I	CCWWGG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	23, 199
FaiI	YATR	9 cut(s)	21, 42, 47, 138, 143, 197, 201, 207, 248
FatI	CATG	2 cut(s)	19, 195
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	111, 131
Fsp4HI	GCNGC	2 cut(s)	111, 131
GluI	GCNGC	2 cut(s)	111, 131
Hin1II	CATG	2 cut(s)	23, 199
HinfI	GANTC	2 cut(s)	8, 77
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	105, 113, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	99, 120
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	23, 199
LpnPI	CCDG	1 cut(s)	132
Lsp1109I	GCAGC	2 cut(s)	97, 117
MaeII	ACGT	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	8, 239
MnlI	CCTC	2 cut(s)	22, 115
MwoI	GCNNNNNNNGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	23, 199
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	112, 132
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Ppu21I	YACGTR	1 cut(s)	221
PscI	ACATGT	1 cut(s)	195
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SatI	GCNGC	2 cut(s)	111, 131
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	41, 132, 190, 223, 244, 258
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	51, 59
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	223
TasI	AATT	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	3 cut(s)	107, 112, 120
TseI	GCWGC	2 cut(s)	110, 130
TspDTI	ATGAA	2 cut(s)	8, 69
TspRI	CASTG	3 cut(s)	107, 112, 120
VneI	GTGCAC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.