Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011141

Physical Location & Seq

Genomic Coordinates Forward (+)

16580931 .. 16582304

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1101600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAATTTGGGTCGAGCTTGGACTCTCTGGCTTTGGATTTACTGGGTATTGTTAAAGAAACGTGAGGATTGCGATTTGGTTTTGAATGGCTCTGTTGTTGCTGTGATTATTAGTATTCTGGGGAAAGTGGGTCGGGTTTCGAATGCAACTTCGTTGTTTCAGAATTTGCACAATGAAGGCTTTTCTCTTGATGTTTATGCTTATACTTCTTTGATTACTGCTTGTGCTAGTAATGGGAGGTATCGGGAGGCGGTTTCGGTGTTTAAGAAAATGGAGGAAGAGGGTTGTAGGCCGACTTTGATAACTTACAATGTGATTTTGAATGTGTATGGGAAAATGGGTATGCCTTGGCATAAGATTAGAGCTCTTGTGGAGGGTATGAAGAGTTCTGGGATTGCCCCGGATTCTTATACTTATAATACGCTTATTACTTGTTGTCGGTGTGGGTCTTTGTATTTGGACGCTGCTGAGGTTTTTCAGGAGATGAAAACAGCCGGGTTTGTATCTGATAAGGTTACGTATAATGCGCTGTTGGATGTGTATGGGAAGTCTCGGCGGACAAAGGAAGCAATGGAGGTGTTGAAAGATATGGAGTTCAATGGGTTTTCTCCGAGCATTGTGTCTTACAATTCGTTGGTATTGGCTTATGCAAGAGATGGTTTGCTGGAGGAGGCAACAGCCTTGAAAACCCAGATGGTGGAGAAAGGGATTAAACCCGATGTTTTTACCTACACCACCCTTTTGTCAGGATATGAGAAGGCTGGGAAGGATGATCTGGCAATGAGGATTTTTGAGGAGATGAAAAGTTTTGGTTGCAAACCAAACATTTGTACCTTTAACGCCCTTATTAAGATGCATGGTAACAGGGGAAATTTTGCTGAAATGATGAAAGTTTTTGAAGAGATCAAGATATGTAAGTGCACCCCAGACATAGTTACTTGGAACACACTTTTGGCAGTGTTTGGCCAAAATGGGATGGACTTGGAAGTTTCGGGAGTGTTCAGGGAGATGAAGAGAGCAGGGTTTGTACCCGAGAGGGATACTTTCAACACTCTAATCAGTGCATACAGCCGGTGCGGTTCTTTCGACCAAGCTATGGCTGTGTATAAGAGAAGCTGGTGTTACTCCAGACCTCTCCTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

382

Amino Acids

42.97

Weight (kDa)

8.48

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	33 - 146	1.2e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	36 - 76	7e-06	PPR repeat family
PPR_long	PF17177	46 - 146	5.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	51 - 113	4.6e-22	Pentatricopeptide repeat domain
PPR_1	PF12854	60 - 92	5.9e-06	PPR repeat
PPR_2	PF13041	64 - 110	2.2e-13	PPR repeat family
PPR	PF01535	67 - 96	2.2e-09	PPR repeat
PPR_2	PF13041	98 - 146	1.6e-11	PPR repeat family
PPR_long	PF17177	123 - 258	2.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	123 - 183	2.1e-09	Pentatricopeptide repeat domain
PPR_3	PF13812	158 - 216	6.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	166 - 198	3.4e-06	PPR repeat
PPR_2	PF13041	170 - 212	7.1e-11	PPR repeat family
PPR	PF01535	172 - 202	2.6e-07	PPR repeat
PPR_2	PF13041	204 - 251	2.9e-14	PPR repeat family
PPR_3	PF13812	228 - 289	4e-23	Pentatricopeptide repeat domain
PPR_1	PF12854	235 - 268	9.2e-10	PPR repeat
PPR_2	PF13041	240 - 284	1.3e-13	PPR repeat family
PPR	PF01535	242 - 272	7.5e-08	PPR repeat
TPR_24	PF23276	253 - 371	7.1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	260 - 368	6.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	274 - 318	1.2e-09	PPR repeat family
PPR_3	PF13812	297 - 356	3.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	309 - 356	1.4e-09	PPR repeat family
PPR	PF01535	312 - 342	4.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02860 AT5G02860 AT5G02860 AT5G02860 AT5G02860
fragaria_vesca	FvH4_2g04590
malus_domestica	MD10G1101600.v1.1
prunus_persica	Prupe.8G139200_v2.0.a1
pyrus_communis	pycom10g08710
rosa_chinensis	RchiOBHm_Chr6g0254201
rosa_laevigata	RLG00000014936
rosa_multiflora	Rmu_sc0000010.1_g000016 Rmu_sc0003711.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211090
rosa_rugosa	Rorug05G0550600
rosa_samantha	Rh6AG067000 Rh6BG060100 Rh6CG059900 Rh6DG056900
rosa_wichuraiana	Rw6G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccB7I	CCANNNNNTGG	2 cut(s)	697, 1096
AciI	CCGC	3 cut(s)	251, 556, 1077
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	3 cut(s)	4, 163, 871
AfaI	GTAC	2 cut(s)	832, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	697, 1096
AgsI	TTSAA	7 cut(s)	85, 322, 583, 598, 685, 899, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
AluBI	AGCT	4 cut(s)	17, 365, 1094, 1116
AluI	AGCT	4 cut(s)	17, 365, 1094, 1116
Alw21I	GWGCWC	2 cut(s)	367, 923
Alw26I	GTCTC	1 cut(s)	555
Alw44I	GTGCAC	1 cut(s)	919
Ama87I	CYCGRG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	290, 964
ApaLI	GTGCAC	1 cut(s)	919
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	3 cut(s)	4, 163, 871
AspLEI	GCGC	1 cut(s)	529
AsuC2I	CCSGG	2 cut(s)	401, 496
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	1031
BaeGI	GKGCMC	1 cut(s)	923
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
BalI	TGGCCA	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	367, 923
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	650, 688, 970
BciVI	GTATCC	1 cut(s)	1033
BcnI	CCSGG	2 cut(s)	401, 496
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	1033
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	401, 496
BmeT110I	CYCGRG	1 cut(s)	1031
BmrFI	CCNGG	2 cut(s)	401, 496
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	843
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	2 cut(s)	686, 1111
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	140
BpuMI	CCSGG	2 cut(s)	401, 496
BsaAI	YACGTR	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	347, 399
BsaXI	ACNNNNNCTCC	1 cut(s)	1122
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 1096
Bse118I	RCCGGY	1 cut(s)	1071
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	2 cut(s)	576, 786
BseDI	CCNNGG	2 cut(s)	347, 399
BseGI	GGATG	3 cut(s)	541, 775, 981
BseLI	CCNNNNNNNGG	2 cut(s)	697, 1096
BseMI	GCAATG	2 cut(s)	576, 786
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	683, 809, 1127
BseSI	GKGCMC	1 cut(s)	923
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	761
BshFI	GGCC	2 cut(s)	292, 966
BsiHKAI	GWGCWC	2 cut(s)	367, 923
BsiHKCI	CYCGRG	1 cut(s)	1031
BsiSI	CCGG	3 cut(s)	401, 495, 1072
BslI	CCNNNNNNNGG	2 cut(s)	697, 1096
BsmAI	GTCTC	1 cut(s)	555
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	292, 966
BsoBI	CYCGRG	1 cut(s)	1031
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	367, 923
Bsp143I	GATC	2 cut(s)	772, 903
BspACI	CCGC	3 cut(s)	251, 556, 1077
BspANI	GGCC	2 cut(s)	292, 966
BspCNI	CTCAG	1 cut(s)	460
BspT104I	TTCGAA	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	576, 786
BsrFI	RCCGGY	1 cut(s)	1071
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	1071
BssECI	CCNNGG	2 cut(s)	347, 399
BssMI	GATC	2 cut(s)	772, 903
BssT1I	CCWWGG	1 cut(s)	347
Bst6I	CTCTTC	4 cut(s)	273, 377, 894, 1007
BstBAI	YACGTR	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	541, 775, 981
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	775, 906
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	2 cut(s)	772, 903
BstSCI	CCNGG	2 cut(s)	399, 494
BstSLI	GKGCMC	1 cut(s)	923
BstSNI	TACGTA	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	2 cut(s)	292, 966
BtsCI	GGATG	3 cut(s)	541, 775, 981
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	2 cut(s)	963, 1066
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	1071
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	831, 1028
CviAII	CATG	1 cut(s)	857
CviQI	GTAC	2 cut(s)	831, 1028
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	774, 905
DpnII	GATC	2 cut(s)	772, 903
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	4 cut(s)	273, 377, 894, 1007
EarI	CTCTTC	4 cut(s)	273, 377, 894, 1007
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	365
Eco105I	TACGTA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	1031
EcoICRI	GAGCTC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	858
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	860
FatI	CATG	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	3 cut(s)	548, 782, 988
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	2 cut(s)	686, 1111
HaeIII	GGCC	2 cut(s)	292, 966
HapII	CCGG	3 cut(s)	401, 495, 1072
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	1 cut(s)	860
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	2 cut(s)	22, 404
HpaII	CCGG	3 cut(s)	401, 495, 1072
Hpy166II	GTNNAC	1 cut(s)	921
Hpy188I	TCNGA	3 cut(s)	162, 508, 612
Hpy188III	TCNNGA	7 cut(s)	188, 245, 479, 747, 907, 993, 1128
Hpy8I	GTNNAC	1 cut(s)	921
HpyAV	CCTTC	3 cut(s)	170, 751, 760
HpyCH4IV	ACGT	2 cut(s)	61, 518
HpyCH4V	TGCA	7 cut(s)	146, 169, 650, 816, 856, 921, 1064
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	2 cut(s)	61, 518
Hsp92II	CATG	1 cut(s)	860
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	772, 903
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	61, 518
MaeIII	GTNAC	4 cut(s)	514, 860, 934, 1121
MalI	GATC	2 cut(s)	774, 905
MboI	GATC	2 cut(s)	772, 903
MboII	GAAGA	4 cut(s)	290, 394, 911, 1024
MhlI	GDGCHC	2 cut(s)	367, 923
MlsI	TGGCCA	1 cut(s)	966
MluCI	AATT	4 cut(s)	4, 163, 628, 871
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	513
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	5 cut(s)	53, 264, 711, 837, 849
Msp20I	TGGCCA	1 cut(s)	966
MspI	CCGG	3 cut(s)	401, 495, 1072
MspR9I	CCNGG	2 cut(s)	401, 496
Mva1269I	GAATGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	401, 496
NdeII	GATC	2 cut(s)	772, 903
NlaIII	CATG	1 cut(s)	860
NmeAIII	GCCGAG	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	858
NspV	TTCGAA	1 cut(s)	140
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	404
PflMI	CCANNNNNTGG	2 cut(s)	697, 1096
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	761
PsrI	GAACNNNNNNTAC	2 cut(s)	370, 402
RsaI	GTAC	2 cut(s)	832, 1029
RsaNI	GTAC	2 cut(s)	831, 1028
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	5 cut(s)	53, 264, 711, 837, 849
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	772, 903
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	401, 496
SduI	GDGCHC	2 cut(s)	367, 923
SfaNI	GCATC	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	140
SnaBI	TACGTA	1 cut(s)	519
Sse9I	AATT	4 cut(s)	4, 163, 628, 871
SsiI	CCGC	3 cut(s)	251, 556, 1077
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	399, 494
StyI	CCWWGG	1 cut(s)	347
TaiI	ACGT	2 cut(s)	64, 521
TaqI	TCGA	3 cut(s)	13, 140, 1086
TasI	AATT	4 cut(s)	4, 163, 628, 871
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	5 cut(s)	53, 264, 711, 837, 849
Tru9I	TTAA	5 cut(s)	53, 264, 711, 837, 849
TscAI	CASTG	2 cut(s)	963, 1066
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	7 cut(s)	17, 189, 395, 500, 815, 902, 1025
TspRI	CASTG	2 cut(s)	963, 1066
Van91I	CCANNNNNTGG	2 cut(s)	697, 1096
VneI	GTGCAC	1 cut(s)	919
XapI	RAATTY	3 cut(s)	4, 163, 871
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.