Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011141

Physical Location & Seq

Genomic Coordinates Forward (+)

73871777 .. 73873842

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0550600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTACTTGCAATGGTTTGGTAATTCTAGGTGATGTCCATTGTACAAACTTGTCTATCTGGAACCCTTCAACTGCATTCTTCCGCAAAATACCTGATCCAGGTATTTGGGCAAAAATGACAACCAAGAATGGAAACAGAAGATGGGCAGTTTTTGTATGTTGTGGTTTTGGGTATGTGTCAGCAACTGATGACTACAAATTTGTTATTCTACTCCATGATTTACCTTTTTTGTTGGGTGTTCACATTTTCTCGGTGAGAGATAATTCATGGAAAATTGTTCAAGTCCCAGGCATTCACGACGACTGGATCTTCAGCAGCAAGGGGGTTCTTTCAAATGAAGTACTCCATTGGATCACTGAGAACAGAACTAATGAGCTAGTTATCTCTGCTTTCGATTTGGCTGAGGAGGAGTTCCAGAAAGAGTCGTTGCTATTCCCTGCGGATGTAGACTGCAACATTTATGATCCAGACTACAACATTCGTGATCCGTGGAAACGGATAGAACTGGGGTGTTTAGATGGATGCCTTTGCATACACTCTCTGAATACTAAAGCTGGTGGGGATATTGAAGTCTGGGTGATGAGAGAATACAGAGTACTTGAATCATGGATCAAACTCTCTAAATTTAGTGTAGACGATATTCCAGGTGTGTTTGTTTCACAAATTCCTTTGTTTCAATTTTTCGTTTCGGAAAGTGGTACTGCTTTCATCAATTCAGATTTCAAGGAGTTGGTCAGAATTGAATGCCACAAAGAAGAGAAGCCGGTTTTGAGTGGTCAGTATAAGATTGAGAAGTGGGAGCCCTTGAATTTAGGTTTATGGGAGCAAATTCTTGAAAGTTTTCGGAAGGAAAAGGAGGATGCCAATTTTTTTTCGGTGATGTTTTACGATGAAACTTTAGTTTCAGTTCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

306

Amino Acids

35.27

Weight (kDa)

4.89

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	2 - 247	2.8e-16	F-box associated beta propeller domain
FBA_3	PF08268	3 - 206	6.4e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02860 AT5G02860 AT5G02860 AT5G02860 AT5G02860
fragaria_vesca	FvH4_2g04590
malus_domestica	MD10G1101600.v1.1
prunus_persica	Prupe.8G139200_v2.0.a1
pyrus_communis	pycom10g08710
rosa_chinensis	RchiOBHm_Chr6g0254201
rosa_laevigata	RLG00000014936
rosa_multiflora	Rmu_sc0000010.1_g000016 Rmu_sc0003711.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211090
rosa_rugosa	Rorug05G0550600
rosa_samantha	Rh6AG067000 Rh6BG060100 Rh6CG059900 Rh6DG056900
rosa_wichuraiana	Rw6G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	450, 636
AciI	CCGC	2 cut(s)	85, 443
AclWI	GGATC	6 cut(s)	92, 317, 362, 461, 482, 620
AcsI	RAATTY	5 cut(s)	200, 626, 666, 811, 831
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	4 cut(s)	46, 345, 600, 703
AfiI	CCNNNNNNNGG	1 cut(s)	101
AjnI	CCWGG	3 cut(s)	100, 289, 646
AluBI	AGCT	2 cut(s)	379, 557
AluI	AGCT	2 cut(s)	379, 557
AlwI	GGATC	6 cut(s)	92, 317, 362, 461, 482, 620
AlwNI	CAGNNNCTG	2 cut(s)	188, 914
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	5 cut(s)	200, 626, 666, 811, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	843
AsuHPI	GGTGA	4 cut(s)	44, 268, 592, 892
BanII	GRGCYC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	2 cut(s)	138, 515
BciT130I	CCWGG	3 cut(s)	102, 291, 648
BfaI	CTAG	2 cut(s)	29, 380
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
BmcAI	AGTACT	2 cut(s)	345, 600
Bme1390I	CCNGG	3 cut(s)	102, 291, 648
BmiI	GGNNCC	2 cut(s)	65, 804
BmrFI	CCNGG	3 cut(s)	102, 291, 648
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	515, 853
BmuI	ACTGGG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	289, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	766
Bse1I	ACTGG	2 cut(s)	311, 513
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	3 cut(s)	102, 291, 648
BseDI	CCNNGG	2 cut(s)	289, 491
BseGI	GGATG	3 cut(s)	451, 530, 868
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	351, 396
BseNI	ACTGG	2 cut(s)	311, 513
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	3 cut(s)	77, 294, 752
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	44
Bsp143I	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
BspACI	CCGC	2 cut(s)	85, 443
BspCNI	CTCAG	2 cut(s)	352, 397
BspLI	GGNNCC	2 cut(s)	65, 804
BspPI	GGATC	6 cut(s)	92, 317, 362, 461, 482, 620
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	766
BsrGI	TGTACA	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	311, 513
BssAI	RCCGGY	1 cut(s)	766
BssECI	CCNNGG	2 cut(s)	289, 491
BssMI	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
Bst2UI	CCWGG	3 cut(s)	102, 291, 648
Bst6I	CTCTTC	1 cut(s)	753
BstAUI	TGTACA	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	360, 405
BstDSI	CCRYGG	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	451, 530, 868
BstKTI	GATC	6 cut(s)	100, 312, 357, 469, 490, 615
BstMBI	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
BstNI	CCWGG	3 cut(s)	102, 291, 648
BstSCI	CCNGG	3 cut(s)	100, 289, 646
BstV1I	GCAGC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	451, 530, 868
BtsIMutI	CAGTG	1 cut(s)	357
CaiI	CAGNNNCTG	2 cut(s)	188, 914
Cfr10I	RCCGGY	1 cut(s)	766
Csp6I	GTAC	4 cut(s)	45, 344, 599, 702
CviAII	CATG	3 cut(s)	218, 270, 609
CviJI	RGCY	6 cut(s)	5, 379, 404, 557, 766, 805
CviKI_1	RGCY	6 cut(s)	5, 379, 404, 557, 766, 805
CviQI	GTAC	4 cut(s)	45, 344, 599, 702
DdeI	CTNAG	2 cut(s)	360, 405
DpnI	GATC	6 cut(s)	99, 311, 356, 468, 489, 614
DpnII	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	807
Eco57I	CTGAAG	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	100, 289, 646
EcoT38I	GRGCYC	1 cut(s)	807
FaeI	CATG	3 cut(s)	221, 273, 612
FaiI	YATR	9 cut(s)	160, 177, 219, 271, 465, 536, 610, 786, 823
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	217, 269, 608
FblI	GTMKAC	2 cut(s)	450, 636
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	3 cut(s)	458, 537, 875
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	2 cut(s)	29, 380
GluI	GCNGC	1 cut(s)	319
HapII	CCGG	1 cut(s)	767
Hin1II	CATG	3 cut(s)	221, 273, 612
HinfI	GANTC	2 cut(s)	425, 605
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	4 cut(s)	44, 268, 592, 892
Hpy166II	GTNNAC	3 cut(s)	244, 451, 637
Hpy188I	TCNGA	5 cut(s)	546, 694, 721, 740, 849
Hpy188III	TCNNGA	7 cut(s)	61, 299, 418, 470, 485, 836, 914
Hpy8I	GTNNAC	3 cut(s)	244, 451, 637
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	78, 844
HpyCH4V	TGCA	4 cut(s)	12, 77, 456, 534
HpyF3I	CTNAG	2 cut(s)	360, 405
Hsp92II	CATG	3 cut(s)	221, 273, 612
Kzo9I	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
LmnI	GCTCC	2 cut(s)	802, 826
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	515, 853
MaeI	CTAG	2 cut(s)	29, 380
MalI	GATC	6 cut(s)	99, 311, 356, 468, 489, 614
MboI	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
MboII	GAAGA	4 cut(s)	73, 153, 304, 770
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	807
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	3 cut(s)	400, 403, 853
MroXI	GAANNNNTTC	1 cut(s)	843
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	3 cut(s)	102, 291, 648
Mva1269I	GAATGC	3 cut(s)	77, 294, 752
MvaI	CCWGG	3 cut(s)	102, 291, 648
NdeII	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
NlaIII	CATG	3 cut(s)	221, 273, 612
NlaIV	GGNNCC	2 cut(s)	65, 804
PctI	GAATGC	3 cut(s)	77, 294, 752
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	3 cut(s)	100, 289, 646
PspGI	CCWGG	3 cut(s)	100, 289, 646
PspN4I	GGNNCC	2 cut(s)	65, 804
PstNI	CAGNNNCTG	2 cut(s)	188, 914
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	4 cut(s)	46, 345, 600, 703
RsaNI	GTAC	4 cut(s)	45, 344, 599, 702
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	6 cut(s)	97, 309, 354, 466, 487, 612
ScaI	AGTACT	2 cut(s)	345, 600
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	102, 291, 648
SduI	GDGCHC	1 cut(s)	807
SetI	ASST	8 cut(s)	34, 97, 106, 229, 381, 559, 652, 820
SfaNI	GCATC	2 cut(s)	515, 853
SsiI	CCGC	2 cut(s)	85, 443
SspMI	CTAG	2 cut(s)	29, 380
StyD4I	CCNGG	3 cut(s)	100, 289, 646
TaqI	TCGA	1 cut(s)	396
TatI	WGTACW	3 cut(s)	44, 343, 598
TfiI	GAWTC	1 cut(s)	605
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	318
TspDTI	ATGAA	4 cut(s)	258, 354, 700, 909
TspGWI	ACGGA	2 cut(s)	480, 514
TspRI	CASTG	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	5 cut(s)	200, 626, 666, 811, 831
XmiI	GTMKAC	2 cut(s)	450, 636
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	2 cut(s)	29, 380
ZrmI	AGTACT	2 cut(s)	345, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.