Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011141

Physical Location & Seq

Genomic Coordinates Reverse (-)

9803418 .. 9805883

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGCTGATAAAATGGCTCTCCCTCTTCTCCTCCCTAACCCACCTCCCTCCTCCTCTAAACCCTTCTTCCCCAACCACCACCAAACCCAAAACCCCTCTCAGCCACCACCATTATCACCACCTCCACCACCACCCATCACCCCAATTCTCCAAGAGCTCCTCCTCCACCCAAACCCCTCAACCCCTCAATCCCAAAACCCCTCTTACCGCAGAACCCGCACGCGCATCGGCCGCTCGCGTGACTCCAACCGCGGCAAGCCTTGGTCCCACCACCGACTCTCCTCCCAAGGTCAGCATATCCTAGACTCCTTTATCAACTCACCCTTTGATTCCTCTAAGCTAGATGAACAGCTTCATAGTCTAGTTGAGTTGCATAGAGTTGAGTTTGGGTTCAGCATGGACTCTTTGTCTTTGGATGTTCTGGGTATTGTCAAAGGCTTAGCCTTCCACAAGAAATTTGAGTTGGCTGTGAGTGTGTTTGAGTGGTTTAAGAAACGTGACGACTGTGAGTCCATTTTGAGTGGTTCTGTTGTTTCTGTGGTTATTAGCATTCTTGGTAAGATGGGCCGGGTTTCGAGTGCTGCTTCTCTGTTTAGAAGTTTACATAAGGATGGGTTTGCTCTTGATGTTTATGCTTACACTTCTTTGATTACTGCTTGTGCTAGTAATGGGAGGTATAGGGAGGCTGTTTCCGTTTTTAAGAAAATGGAGGAAGAGGGTTGCAAGCCCACTTTGATAACTTACAATGTGGTTTTGAATGTGTATGGGAAAATGGGTACTCCTTGGCATAAGATTAAAGCTATTGTTGAGGGTATGAAGAGTGCCGGGATTGCCCCGGATTCTTATACTTACAACACACTGATAACTTGTTGTCGGCGGGGTTCTTTGTATGTAGAGGCTGCTGAGGTTTTTGAGGAGATGAAAGCAGCAGGGTTTGCACCTGATAAGGTTACGTATAACGCGTTGTTGGATGTTTATGGGAAGTCTCGGCGGACTAAGGAAGCAATGGAGGTGTTGAAAGATATGGAGCTTAATGGGTTTTCTCCAAGCATTGTGTCTTACAATTCGTTGATATCAGCTTATGCAAGAGATGGTTTATTGGAGGAAGCAATGGCCCTGAAAACCCAGATGGTGGAAAGGGGGATTAAACCTGATGTTTTTACCTACACCACCCTTTTCTCGGGATATGAGAAGGCTGGGAAGGATGAGGCTGCAATGAGGGTTTTTGACGAGATGAAAGGTTCTGGTTGCAAGCCAAACATTTGTACCTTTAATGCCCTTATTAAGATGCACGGTAACAGGGGAAAGTTCACTGAAATGATGAATGTTCTTGAAGAGATCAACACATGTAAGTGCAGCCCGGATATTGTTACTTGGAATACACTTTTGGCAGTGTTTGGCCAAAACGGGATGGACTCAGAAGTGTCGGGAGTGTTCAGAGAGATGAAGAGGGCAGGATTTGTTCCTGAGAGGGATACTTTTAACACTCTAATCAGTGCATACAGCCGATGTGGTTCTTTTGACCAAGCTGTGGAGGTGTATAAGAGTATGCAAGAAGCAGGAATTACTCCTGACCTTTCCTCATATAATGCTGTTTTAGCAGCATTGGCTCGAGGTGGGCTTTGGGAACAGTCTGAGAAAATACTTGCTCAAATGAAGAATGGTCGTTGCAAACCCAACGAGCTTACGTATAGTTCTCTTCTCCATGCTTATGCCAATGGGAAAGAAATGGAACGCATGCATATTCTGGCCGAAGAAATATACTCTGCTGTAATTGAACCCCATGCTGTGGTCTTAAAGACACTTGTTCTAGTTTTCAGTAAAAGCGACCTCTTGTTGGAAACAGAACATGCCTTCTTGGAACTGAGAAAGAAAGGGTTTTCACCTGACATAACTACGCTGAATGCCATGTTATCAATATATGGTCGGAGGCAGATGGTTTCAAAAGCAAGTGAGATCTTGAGATTCATGAATGAGATGGGTTACACTCCTAGCTTGACAACTTACAATAGTGTGATGTACATGTACAGTCGCTCTGAAGATTTTGAGAAATCTGAAACTTTTCTAAGGGAGATTATGGAGAAGGGAATAAAGCCGGATATAATTTCCTACAATACTGTTATCTATGCTTATTGCAGAAATGGTCGTATGAGAGACGCTTCCCGGATATTCTCAGAGATGAGTGCTTCCGGGATTGCTCCAGATGTAATCACTTACAACACCTTTGTCGCAAGTTATGCAGCCGATTCATTGTTTGTTGAAGCCATTGATGTGGTCCGGTACATGATCAAGCATGGATGTAAACCCAACCAGAACACATACAACTCCATTGTAGATTGGTACTGCAAGCACAATCGACAAGACGAGGGAAAGAAGTTTGTTGACAACCTTCGCAATCTTGATCCACATATTGCTAAGGGGGAGGAATGCAGATTATTAGATCGTATTAGAAATAAATGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

821

Amino Acids

92.36

Weight (kDa)

8.29

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	177 - 306	4.1e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	196 - 258	1.8e-20	Pentatricopeptide repeat domain
PPR_2	PF13041	209 - 255	3.4e-13	PPR repeat family
PPR	PF01535	212 - 241	5.8e-09	PPR repeat
PPR_2	PF13041	246 - 291	6.9e-09	PPR repeat family
PPR_3	PF13812	268 - 328	2.1e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	269 - 402	2.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	290 - 324	7.3e-06	PPR repeat family
PPR_1	PF12854	311 - 343	4.7e-07	PPR repeat
PPR_2	PF13041	314 - 354	3.6e-09	PPR repeat family
PPR	PF01535	317 - 347	4.1e-07	PPR repeat
PPR_1	PF12854	345 - 378	6.8e-08	PPR repeat
PPR_2	PF13041	349 - 396	1.2e-16	PPR repeat family
PPR	PF01535	352 - 382	8.2e-08	PPR repeat
PPR_3	PF13812	373 - 434	1.8e-21	Pentatricopeptide repeat domain
PPR_1	PF12854	380 - 413	3.5e-08	PPR repeat
PPR	PF01535	387 - 417	3.6e-07	PPR repeat
PPR_2	PF13041	391 - 430	7.9e-10	PPR repeat family
PPR_2	PF13041	419 - 458	9.7e-06	PPR repeat family
PPR_2	PF13041	454 - 500	3.9e-09	PPR repeat family
PPR	PF01535	457 - 487	4.5e-06	PPR repeat
PPR_long	PF17177	474 - 602	1e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	478 - 535	5.9e-10	Pentatricopeptide repeat domain
PPR	PF01535	493 - 522	8.9e-08	PPR repeat
PPR_2	PF13041	493 - 538	4.8e-11	PPR repeat family
PPR_3	PF13812	514 - 572	6.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	524 - 573	1.7e-10	PPR repeat family
PPR_3	PF13812	621 - 676	2.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	629 - 676	5e-06	PPR repeat family
TPR_24	PF23276	634 - 726	5e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	645 - 734	3.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	689 - 743	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	695 - 728	3.2e-12	PPR repeat
PPR_2	PF13041	699 - 745	1.8e-15	PPR repeat family
PPR	PF01535	702 - 732	5e-08	PPR repeat
PPR_2	PF13041	734 - 783	5.8e-12	PPR repeat family
PPR_1	PF12854	765 - 795	2.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02860 AT5G02860 AT5G02860 AT5G02860 AT5G02860
fragaria_vesca	FvH4_2g04590
malus_domestica	MD10G1101600.v1.1
prunus_persica	Prupe.8G139200_v2.0.a1
pyrus_communis	pycom10g08710
rosa_chinensis	RchiOBHm_Chr6g0254201
rosa_laevigata	RLG00000014936
rosa_multiflora	Rmu_sc0000010.1_g000016 Rmu_sc0003711.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211090
rosa_rugosa	Rorug05G0550600
rosa_samantha	Rh6AG067000 Rh6BG060100 Rh6CG059900 Rh6DG056900
rosa_wichuraiana	Rw6G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	1132, 1531, 1789
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	4 cut(s)	223, 238, 252, 962
AciI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
AclWI	GGATC	1 cut(s)	2396
AcoI	YGGCCR	3 cut(s)	229, 1399, 1749
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	2058
AfaI	GTAC	6 cut(s)	778, 1267, 2021, 2027, 2282, 2342
AfiI	CCNNNNNNNGG	5 cut(s)	1132, 1180, 1531, 1789, 1837
AflIII	ACRYGT	3 cut(s)	960, 1346, 2022
AgsI	TTSAA	6 cut(s)	757, 1018, 1334, 1778, 1944, 2261
AhdI	GACNNNNNGTC	2 cut(s)	406, 508
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1370, 1402
AluBI	AGCT	9 cut(s)	157, 340, 352, 800, 1030, 1079, 1529, 1684, 1995
AluI	AGCT	9 cut(s)	157, 340, 352, 800, 1030, 1079, 1529, 1684, 1995
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	990, 2148
AlwI	GGATC	1 cut(s)	2396
Ama87I	CYCGRG	2 cut(s)	1180, 1611
AoxI	GGCC	5 cut(s)	229, 565, 1113, 1399, 1749
ApeKI	GCWGC	7 cut(s)	581, 899, 926, 1211, 1356, 1601, 2240
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	2 cut(s)	351, 2061
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	264, 565, 1114, 2275
AsuC2I	CCSGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
AsuHPI	GGTGA	4 cut(s)	108, 130, 312, 1875
AvaI	CYCGRG	2 cut(s)	1180, 1611
AvaII	GGWCC	2 cut(s)	264, 2275
BaeI	ACNNNNGTAYC	2 cut(s)	1249, 1282
BalI	TGGCCA	1 cut(s)	1401
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	7 cut(s)	568, 886, 938, 1198, 1368, 1613, 2252
BccI	CCATC	8 cut(s)	143, 556, 605, 1085, 1123, 1405, 1930, 1972
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciVI	GTATCC	1 cut(s)	1468
BclI	TGATCA	1 cut(s)	2286
BcnI	CCSGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
BcoDI	GTCTC	2 cut(s)	990, 2148
BfaI	CTAG	6 cut(s)	302, 341, 362, 663, 1811, 1992
BfuI	GTATCC	1 cut(s)	1468
BglII	AGATCT	1 cut(s)	1956
BisI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1212, 1357, 1602, 2241
BlpI	GCTNAGC	1 cut(s)	439
BlsI	GCNGC	9 cut(s)	233, 254, 583, 901, 928, 1213, 1358, 1603, 2242
Bme1390I	CCNGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
Bme18I	GGWCC	2 cut(s)	264, 2275
BmeRI	GACNNNNNGTC	2 cut(s)	406, 508
BmeT110I	CYCGRG	2 cut(s)	1180, 1611
BmgT120I	GGNCC	4 cut(s)	264, 565, 1114, 2275
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
BmsI	GCATC	2 cut(s)	234, 1278
BpmI	CTGGAG	1 cut(s)	2184
Bpu10I	CCTNAGC	2 cut(s)	903, 2415
Bpu1102I	GCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	1981
BpuMI	CCSGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
BsaAI	YACGTR	2 cut(s)	954, 1689
BsaJI	CCNNGG	5 cut(s)	250, 260, 286, 782, 834
BsaWI	WCCGGW	1 cut(s)	2277
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	5 cut(s)	1132, 1180, 1531, 1789, 1837
Bse3DI	GCAATG	3 cut(s)	1011, 1116, 1221
BseDI	CCNNGG	5 cut(s)	250, 260, 286, 782, 834
BseGI	GGATG	6 cut(s)	421, 616, 976, 1210, 1416, 2303
BseLI	CCNNNNNNNGG	5 cut(s)	1132, 1180, 1531, 1789, 1837
BseMI	GCAATG	3 cut(s)	1011, 1116, 1221
BseMII	CTCAG	7 cut(s)	113, 894, 1431, 1458, 1626, 1856, 2187
BseRI	GAGGAG	7 cut(s)	20, 40, 43, 149, 152, 271, 929
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	7 cut(s)	568, 886, 938, 1198, 1368, 1613, 2252
BseYI	CCCAGC	1 cut(s)	1196
BsgI	GTGCAG	1 cut(s)	1375
Bsh1236I	CGCG	4 cut(s)	223, 238, 252, 962
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	5 cut(s)	231, 567, 1115, 1401, 1751
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	1180, 1611
BsiSI	CCGG	8 cut(s)	568, 825, 836, 1361, 2096, 2164, 2190, 2278
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	5 cut(s)	1132, 1180, 1531, 1789, 1837
BsmAI	GTCTC	2 cut(s)	990, 2148
BsmBI	CGTCTC	1 cut(s)	2148
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	3 cut(s)	549, 1909, 2432
BsnI	GGCC	5 cut(s)	231, 567, 1115, 1401, 1751
BsoBI	CYCGRG	2 cut(s)	1180, 1611
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	2 cut(s)	2019, 2025
Bsp143I	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
Bsp1720I	GCTNAGC	1 cut(s)	439
BspACI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
BspANI	GGCC	5 cut(s)	231, 567, 1115, 1401, 1751
BspCNI	CTCAG	7 cut(s)	112, 895, 1430, 1459, 1627, 1857, 2186
BspFNI	CGCG	4 cut(s)	223, 238, 252, 962
BspHI	TCATGA	1 cut(s)	1968
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	2396
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	3 cut(s)	1011, 1116, 1221
BsrGI	TGTACA	2 cut(s)	2019, 2025
BssECI	CCNNGG	5 cut(s)	250, 260, 286, 782, 834
BssMI	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
BssT1I	CCWWGG	3 cut(s)	260, 286, 782
Bst4CI	ACNGT	5 cut(s)	506, 1295, 1632, 2030, 2119
Bst6I	CTCTTC	6 cut(s)	30, 708, 812, 1329, 1442, 1704
BstAPI	GCANNNNNTGC	2 cut(s)	935, 2237
BstAUI	TGTACA	2 cut(s)	2019, 2025
BstBAI	YACGTR	2 cut(s)	954, 1689
BstC8I	GCNNGC	7 cut(s)	221, 236, 257, 725, 1253, 1739, 2348
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	6 cut(s)	421, 616, 976, 1210, 1416, 2303
BstFNI	CGCG	4 cut(s)	223, 238, 252, 962
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
BstMAI	GTCTC	2 cut(s)	990, 2148
BstMBI	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1598, 1607, 2237
BstNSI	RCATGY	4 cut(s)	1350, 1741, 1853, 2026
BstSCI	CCNGG	6 cut(s)	567, 824, 834, 1359, 2162, 2189
BstSNI	TACGTA	2 cut(s)	954, 1689
BstUI	CGCG	4 cut(s)	223, 238, 252, 962
BstV1I	GCAGC	7 cut(s)	568, 886, 938, 1198, 1368, 1613, 2252
BstX2I	RGATCY	1 cut(s)	1956
BstXI	CCANNNNNNTGG	1 cut(s)	2272
BstYI	RGATCY	1 cut(s)	1956
BstZI	CGGCCG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	1468
BsuRI	GGCC	5 cut(s)	231, 567, 1115, 1401, 1751
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	6 cut(s)	421, 616, 976, 1210, 1416, 2303
BtsI	GCAGTG	1 cut(s)	1398
BtsIMutI	CAGTG	4 cut(s)	857, 1311, 1398, 1501
Cac8I	GCNNGC	7 cut(s)	221, 236, 257, 725, 1253, 1739, 2348
CciI	TCATGA	1 cut(s)	1968
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	4 cut(s)	264, 565, 1114, 2275
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	1 cut(s)	2165
Csp6I	GTAC	6 cut(s)	777, 1266, 2020, 2026, 2281, 2341
CviQI	GTAC	6 cut(s)	777, 1266, 2020, 2026, 2281, 2341
DpnI	GATC	5 cut(s)	1340, 1958, 2288, 2403, 2442
DpnII	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
DriI	GACNNNNNGTC	2 cut(s)	406, 508
EaeI	YGGCCR	3 cut(s)	229, 1399, 1749
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	6 cut(s)	30, 708, 812, 1329, 1442, 1704
Eam1105I	GACNNNNNGTC	2 cut(s)	406, 508
EarI	CTCTTC	6 cut(s)	30, 708, 812, 1329, 1442, 1704
EciI	GGCGGA	1 cut(s)	1006
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	229
Eco105I	TACGTA	2 cut(s)	954, 1689
Eco130I	CCWWGG	3 cut(s)	260, 286, 782
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	1074
Eco47I	GGWCC	2 cut(s)	264, 2275
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	2058
Eco88I	CYCGRG	2 cut(s)	1180, 1611
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	1074
EcoT14I	CCWWGG	3 cut(s)	260, 286, 782
EcoT22I	ATGCAT	1 cut(s)	1743
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	260, 286, 782
Esp3I	CGTCTC	1 cut(s)	2148
FaqI	GGGAC	1 cut(s)	250
FauI	CCCGC	2 cut(s)	224, 870
FbaI	TGATCA	1 cut(s)	2286
Fnu4HI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1212, 1357, 1602, 2241
FokI	GGATG	6 cut(s)	428, 623, 983, 1217, 1423, 2310
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1212, 1357, 1602, 2241
FspBI	CTAG	6 cut(s)	302, 341, 362, 663, 1811, 1992
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1212, 1357, 1602, 2241
GsaI	CCCAGC	1 cut(s)	1200
GsuI	CTGGAG	1 cut(s)	2184
HaeIII	GGCC	5 cut(s)	231, 567, 1115, 1401, 1751
HapII	CCGG	8 cut(s)	568, 825, 836, 1361, 2096, 2164, 2190, 2278
HgaI	GACGC	1 cut(s)	2165
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	2383
HindII	GTYRAC	1 cut(s)	2383
HpaII	CCGG	8 cut(s)	568, 825, 836, 1361, 2096, 2164, 2190, 2278
HphI	GGTGA	4 cut(s)	108, 130, 312, 1875
Hpy166II	GTNNAC	4 cut(s)	602, 1311, 2303, 2383
Hpy188I	TCNGA	7 cut(s)	1420, 1439, 1636, 1929, 2038, 2056, 2176
Hpy8I	GTNNAC	4 cut(s)	602, 1311, 2303, 2383
HpyAV	CCTTC	7 cut(s)	73, 454, 1186, 1195, 1864, 2077, 2399
HpyCH4III	ACNGT	5 cut(s)	506, 1295, 1632, 2030, 2119
HpyCH4IV	ACGT	3 cut(s)	496, 953, 1688
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1598, 1607, 2237
HpySE526I	ACGT	3 cut(s)	496, 953, 1688
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	2286
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
LmnI	GCTCC	3 cut(s)	162, 1027, 2203
Lsp1109I	GCAGC	7 cut(s)	568, 886, 938, 1198, 1368, 1613, 2252
LweI	GCATC	2 cut(s)	234, 1278
MaeI	CTAG	6 cut(s)	302, 341, 362, 663, 1811, 1992
MaeII	ACGT	3 cut(s)	496, 953, 1688
MaeIII	GTNAC	6 cut(s)	239, 497, 949, 1295, 1369, 1982
MalI	GATC	5 cut(s)	1340, 1958, 2288, 2403, 2442
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
MflI	RGATCY	1 cut(s)	1956
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	1401
MluCI	AATT	6 cut(s)	144, 455, 1063, 1563, 1773, 2103
MluI	ACGCGT	1 cut(s)	960
MluNI	TGGCCA	1 cut(s)	1401
MlyI	GAGTC	6 cut(s)	236, 270, 299, 395, 518, 1409
MmeI	TCCRAC	4 cut(s)	270, 948, 1818, 1907
Mox20I	TGGCCA	1 cut(s)	1401
Mph1103I	ATGCAT	1 cut(s)	1743
MroXI	GAANNNNTTC	2 cut(s)	351, 2061
MscI	TGGCCA	1 cut(s)	1401
MseI	TTAA	9 cut(s)	489, 699, 795, 1032, 1146, 1272, 1284, 1482, 1796
MslI	CAYNNNNRTG	5 cut(s)	609, 1316, 1351, 1710, 2270
Msp20I	TGGCCA	1 cut(s)	1401
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	8 cut(s)	568, 825, 836, 1361, 2096, 2164, 2190, 2278
MspR9I	CCNGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
Mva1269I	GAATGC	3 cut(s)	549, 1909, 2432
MvnI	CGCG	4 cut(s)	223, 238, 252, 962
MwoI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1598, 1607, 2237
NciI	CCSGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
NdeII	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	967
NmuCI	GTSAC	2 cut(s)	239, 497
NsiI	ATGCAT	1 cut(s)	1743
NspI	RCATGY	4 cut(s)	1350, 1741, 1853, 2026
PaeI	GCATGC	1 cut(s)	1741
PaeR7I	CTCGAG	1 cut(s)	1611
PagI	TCATGA	1 cut(s)	1968
PciI	ACATGT	2 cut(s)	1346, 2022
PcsI	WCGNNNNNNNCGW	1 cut(s)	959
PctI	GAATGC	3 cut(s)	549, 1909, 2432
PdmI	GAANNNNTTC	2 cut(s)	351, 2061
PfeI	GAWTC	4 cut(s)	329, 839, 1965, 2246
PflMI	CCANNNNNTGG	3 cut(s)	1132, 1531, 1789
PfoI	TCCNGGA	2 cut(s)	2162, 2189
PkrI	GCNGC	9 cut(s)	233, 254, 583, 901, 928, 1213, 1358, 1603, 2242
PleI	GAGTC	6 cut(s)	236, 270, 299, 395, 517, 1409
PpsI	GAGTC	6 cut(s)	236, 270, 299, 395, 517, 1409
Ppu21I	YACGTR	2 cut(s)	954, 1689
PscI	ACATGT	2 cut(s)	1346, 2022
Psp124BI	GAGCTC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	1196
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	4 cut(s)	264, 565, 1114, 2275
PspXI	VCTCGAGB	1 cut(s)	1611
PsuI	RGATCY	1 cut(s)	1956
RsaI	GTAC	6 cut(s)	778, 1267, 2021, 2027, 2282, 2342
RsaNI	GTAC	6 cut(s)	777, 1266, 2020, 2026, 2281, 2341
RseI	CAYNNNNRTG	5 cut(s)	609, 1316, 1351, 1710, 2270
SacI	GAGCTC	1 cut(s)	159
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	9 cut(s)	489, 699, 795, 1032, 1146, 1272, 1284, 1482, 1796
SatI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1212, 1357, 1602, 2241
Sau3AI	GATC	5 cut(s)	1338, 1956, 2286, 2401, 2440
Sau96I	GGNCC	4 cut(s)	264, 565, 1114, 2275
SchI	GAGTC	6 cut(s)	236, 270, 299, 395, 518, 1409
ScrFI	CCNGG	6 cut(s)	569, 826, 836, 1361, 2164, 2191
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	234, 1278
Sfr274I	CTCGAG	1 cut(s)	1611
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	2 cut(s)	264, 2275
SlaI	CTCGAG	1 cut(s)	1611
SmiMI	CAYNNNNRTG	5 cut(s)	609, 1316, 1351, 1710, 2270
SmlI	CTYRAG	2 cut(s)	1611, 1960
SmoI	CTYRAG	2 cut(s)	1611, 1960
SnaBI	TACGTA	2 cut(s)	954, 1689
SphI	GCATGC	1 cut(s)	1741
Sse9I	AATT	6 cut(s)	144, 455, 1063, 1563, 1773, 2103
SsiI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
SspMI	CTAG	6 cut(s)	302, 341, 362, 663, 1811, 1992
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	6 cut(s)	567, 824, 834, 1359, 2162, 2189
StyI	CCWWGG	3 cut(s)	260, 286, 782
TaaI	ACNGT	5 cut(s)	506, 1295, 1632, 2030, 2119
TaiI	ACGT	3 cut(s)	499, 956, 1691
TaqI	TCGA	3 cut(s)	575, 1612, 2356
TasI	AATT	6 cut(s)	144, 455, 1063, 1563, 1773, 2103
TatI	WGTACW	2 cut(s)	2019, 2025
TauI	GCSGC	2 cut(s)	234, 255
TfiI	GAWTC	4 cut(s)	329, 839, 1965, 2246
Tru1I	TTAA	9 cut(s)	489, 699, 795, 1032, 1146, 1272, 1284, 1482, 1796
Tru9I	TTAA	9 cut(s)	489, 699, 795, 1032, 1146, 1272, 1284, 1482, 1796
TscAI	CASTG	4 cut(s)	864, 1318, 1398, 1501
TseFI	GTSAC	2 cut(s)	239, 497
TseI	GCWGC	7 cut(s)	581, 899, 926, 1211, 1356, 1601, 2240
Tsp45I	GTSAC	2 cut(s)	239, 497
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	4 cut(s)	864, 1318, 1398, 1501
Van91I	CCANNNNNTGG	3 cut(s)	1132, 1531, 1789
VpaK11BI	GGWCC	2 cut(s)	264, 2275
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	4 cut(s)	1350, 1741, 1853, 2026
XhoI	CTCGAG	1 cut(s)	1611
XmnI	GAANNNNTTC	2 cut(s)	351, 2061
XspI	CTAG	6 cut(s)	302, 341, 362, 663, 1811, 1992
Zsp2I	ATGCAT	1 cut(s)	1743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.