Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011141

Physical Location & Seq

Genomic Coordinates Reverse (-)

9538069 .. 9540537

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG060100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGCTGATAAAATGGCTCTCCCTCTTCTCCTCCCTAACCCACCTCCCTCCTCCTCTAAACCCTTCTTCCCCAACCACCACCAAACCCAAAACCCCTCTCAGCCACCACCATTACCACCACCTCCACCCCCACCCATCACCCCAATTCTCCAAGAGCTCCTCCTCCACCCAAACCCCTCAACCCCTCAATCCCAAAACCCCTCTTACCGCAGAACCCGCACGCGCATCGGCCGCTCGCGTGACTCCAACCGCGGCAAGCCTTGGTCCCACCACCGACTCTCCTCCCAAGGTCAGCATATCCTAGACTCCTTTATCAACTCACCCTTTGATTCCTCTAAGCTAGATGAACAGCTTCATAGTCTAGTTGAGTTGCATAGAGTTGAGTTTGGGTTCAGCATGGACTCTTTGTCTTTGGATGTTCTGGGTATTGTCAAAGGCTTGGCCTTCCACAAGAAATTTGAGTTGGCTGTGAGTGTGTTTGAGTGGTTTAAGAAACGTGACGACTGTGAGTCCATTTTGAGTGGTTCTGTTGTTTCTGTGGTTATTAGCATTCTTGGTAAGATGGGCCGGGTTTCGAGTGCTGCTTCTTTGTTTAGAAGTTTACATAAGGATGGATTTGCTCTTGATGTTTATGCTTACACTTCTTTGATTACTGCTTGTGCTAGTAATGGGAGGTATAGGGAGGCTGTTTCGGTTTTTAAGAAAATGGAGGAAGAGGGTTGCAAGCCCACTTTGATAACTTACAATGTGGTTTTGAATGTGTATGGGAAAATGGGCACTCCTTGGCATAAGATTAAAGCTATTGTTGAGGGTATGAAGAGTGCCGGGATTGCCCCAGATTCTTATACTTATAACACGCTGATAACTTGTTGTCGGCGGGGGTCTTTGTATGTAGAGGCTGCTGAGGTTTTTGAGGAGATGAAAGCAGCAGGGTTTGCACCTGATAAGGTTACGTATAACGCATTGTTGGATGTTTATGGGAAGTCTCGGCGGACTAAGGAAGCAATGGAGGAGGTGTTGAAAGATATGGAGCTTAATGGGTTTTCTCCAAGCATTGTGTCTTACAATTCGTTGATATCAGCGTATGCAAGAGATGGTTTATTGGAGGAAGCAATGGCCCTGAAAACCCAGATGGTGGAAAGGGGGATTAAACCTGATGTTTTTACCTACACCACCCTTTTCTCGGGATATGAGAAGGCTGGGAAGGATGAGGCTGCAATGAGGATTTTTGACGAGATGAAAGGTTCTGGTTGCAAGCCAAACATTTGTACCTTTAATGCCCTTATTAAGATGCACGGTAACAGGGGAAAGTTCACTGAAATGATGAATGTTCTTGAAGAGATCAACACATGTAAGTGCAGCCCGGATATTGTTACTTGGAATACACTTTTGGCAGTGTTTGGCCAAAACGGGATGGACTCAGAAGTGTCGGGAGTGTTCAGAGAGATGAAGAGGGCAGGATTTGTTCCTGAGAGGGATACTTTTAACACTCTAATCAGTGCATACAGCCGATGTGGTTCTTTTGACCAAGCTGTGGAGGTGTATAAGAGTATGCAAGAAGCAGGAATTACTCCAGACCTTTCCTCATATAATGCTGTTTTAGCAGCATTGGCTCGAGGTGGGCTTTGGGAACAGTCTGAGAAAATACTTGCTGAAATGAAGAATGGTCGTTGCAAACCCAACGAGCTTACGTATAGTTCTCTTCTCCATGCTTATGCCAATGGGAAAGAAATGGAACGCATGCATATTCTGGCCGAAGAAATATACTCTGCTGTAATTGAACCCCATGCTGTGGTCTTAAAGACACTTGTTCTAGTTTTCAGTAAAAGCGACCTCTTGTTGGAAACAGAACATGCCTTCTTGGAACTGAGAAAGAAAGGGTTTTCACCTGACATAACTACGCTGAATGCCATGTTATCAATATATGGTCGGAGGCAGATGGTTTCAAAAGCAAGTGAGATCTTGAGATTCATGAATGAGATGGGTTACACTCCTAGCTTGACAACTTACAATAGTGTGATGTACATGTACAGTCGCTCTGAAGATTTTGAGAAATCTGAAACTTTTCTAAGGGAGATTATGGAGAAGGGAATAAAGCCGGATATAATTTCCTACAATACTGTTATCTATGCTTATTGCAGAAATGGTCGTATGAGAGACGCTTCCCGGATATTCTCAGAGATGAGTGCTTCCGGGATTGCTCCAGATGTAATCACTTACAACACCTTTGTCGCAAGTTATGCAGCCGATTCATTGTTTGTTGAAGCCATTGATGTGGTCCGGTACATGATCAAGCATGGATGTAAACCCAACCAGAACACATACAACTCCATTGTAGATTGGTACTGCAAGCACAATCGACAAGACGAGGGAAAGAAGTTTGTTGACAACCTTCGCAATCTTGATCCACATATTGCTAAGGGGGAGGAATGCAGATTATTAGATCGTATTAGAAATAAATGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

822

Amino Acids

92.52

Weight (kDa)

8.01

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	177 - 306	4.1e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	196 - 258	1.8e-20	Pentatricopeptide repeat domain
PPR_2	PF13041	209 - 255	3.4e-13	PPR repeat family
PPR	PF01535	212 - 241	5.8e-09	PPR repeat
PPR_2	PF13041	246 - 291	6.9e-09	PPR repeat family
PPR_3	PF13812	268 - 328	2.1e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	269 - 403	5.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	290 - 326	3.1e-06	PPR repeat family
TPR_24	PF23276	338 - 446	1.8e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	346 - 379	6.8e-08	PPR repeat
PPR_2	PF13041	350 - 397	1.2e-16	PPR repeat family
PPR	PF01535	353 - 383	8.2e-08	PPR repeat
PPR_3	PF13812	374 - 435	1.6e-21	Pentatricopeptide repeat domain
PPR_1	PF12854	381 - 414	1.1e-07	PPR repeat
PPR	PF01535	388 - 418	4.3e-07	PPR repeat
PPR_2	PF13041	391 - 431	4.6e-10	PPR repeat family
PPR_2	PF13041	420 - 459	9.7e-06	PPR repeat family
PPR_2	PF13041	455 - 499	1.8e-08	PPR repeat family
PPR	PF01535	458 - 488	4.5e-06	PPR repeat
PPR_long	PF17177	476 - 602	1.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	479 - 536	5.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	494 - 539	4.8e-11	PPR repeat family
PPR	PF01535	494 - 523	8.9e-08	PPR repeat
PPR_3	PF13812	515 - 573	3.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	525 - 574	6.3e-11	PPR repeat family
PPR_3	PF13812	622 - 677	2.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	630 - 677	5e-06	PPR repeat family
PPR_long	PF17177	646 - 735	3.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	690 - 744	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	696 - 729	3.2e-12	PPR repeat
PPR_2	PF13041	700 - 746	1.8e-15	PPR repeat family
PPR	PF01535	703 - 733	5e-08	PPR repeat
PPR_2	PF13041	735 - 784	5.8e-12	PPR repeat family
PPR_1	PF12854	766 - 796	2.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02860 AT5G02860 AT5G02860 AT5G02860 AT5G02860
fragaria_vesca	FvH4_2g04590
malus_domestica	MD10G1101600.v1.1
prunus_persica	Prupe.8G139200_v2.0.a1
pyrus_communis	pycom10g08710
rosa_chinensis	RchiOBHm_Chr6g0254201
rosa_laevigata	RLG00000014936
rosa_multiflora	Rmu_sc0000010.1_g000016 Rmu_sc0003711.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211090
rosa_rugosa	Rorug05G0550600
rosa_samantha	Rh6AG067000 Rh6BG060100 Rh6CG059900 Rh6DG056900
rosa_wichuraiana	Rw6G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AccB7I	CCANNNNNTGG	3 cut(s)	1135, 1534, 1792
AccBSI	CCGCTC	1 cut(s)	234
AccII	CGCG	3 cut(s)	223, 238, 252
AciI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
AclWI	GGATC	1 cut(s)	2399
AcoI	YGGCCR	3 cut(s)	229, 1402, 1752
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	2061
AfaI	GTAC	5 cut(s)	1270, 2024, 2030, 2285, 2345
AfiI	CCNNNNNNNGG	5 cut(s)	1135, 1183, 1534, 1792, 1840
AflIII	ACRYGT	2 cut(s)	1349, 2025
AgsI	TTSAA	6 cut(s)	757, 1021, 1337, 1781, 1947, 2264
AhdI	GACNNNNNGTC	2 cut(s)	406, 508
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1373, 1405
AluBI	AGCT	8 cut(s)	157, 340, 352, 800, 1033, 1532, 1687, 1998
AluI	AGCT	8 cut(s)	157, 340, 352, 800, 1033, 1532, 1687, 1998
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	990, 2151
AlwI	GGATC	1 cut(s)	2399
Ama87I	CYCGRG	2 cut(s)	1183, 1614
AoxI	GGCC	6 cut(s)	229, 441, 565, 1116, 1402, 1752
ApeKI	GCWGC	7 cut(s)	581, 899, 926, 1214, 1359, 1604, 2243
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	2 cut(s)	351, 2064
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	264, 565, 1117, 2278
AsuC2I	CCSGG	5 cut(s)	569, 826, 1364, 2167, 2194
AsuHPI	GGTGA	3 cut(s)	130, 312, 1878
AvaI	CYCGRG	2 cut(s)	1183, 1614
AvaII	GGWCC	2 cut(s)	264, 2278
BaeGI	GKGCMC	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	1252, 1285
BalI	TGGCCA	1 cut(s)	1404
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	7 cut(s)	568, 886, 938, 1201, 1371, 1616, 2255
BccI	CCATC	8 cut(s)	143, 556, 605, 1088, 1126, 1408, 1933, 1975
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciVI	GTATCC	1 cut(s)	1471
BclI	TGATCA	1 cut(s)	2289
BcnI	CCSGG	5 cut(s)	569, 826, 1364, 2167, 2194
BcoDI	GTCTC	2 cut(s)	990, 2151
BfaI	CTAG	6 cut(s)	302, 341, 362, 663, 1814, 1995
BfuI	GTATCC	1 cut(s)	1471
BglII	AGATCT	1 cut(s)	1959
BisI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1215, 1360, 1605, 2244
BlsI	GCNGC	9 cut(s)	233, 254, 583, 901, 928, 1216, 1361, 1606, 2245
Bme1390I	CCNGG	5 cut(s)	569, 826, 1364, 2167, 2194
Bme18I	GGWCC	2 cut(s)	264, 2278
BmeRI	GACNNNNNGTC	2 cut(s)	406, 508
BmeT110I	CYCGRG	2 cut(s)	1183, 1614
BmgT120I	GGNCC	4 cut(s)	264, 565, 1117, 2278
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	5 cut(s)	569, 826, 1364, 2167, 2194
BmsI	GCATC	2 cut(s)	234, 1281
BpmI	CTGGAG	2 cut(s)	1557, 2187
Bpu10I	CCTNAGC	2 cut(s)	903, 2418
BpuEI	CTTGAG	1 cut(s)	1984
BpuMI	CCSGG	5 cut(s)	569, 826, 1364, 2167, 2194
BsaAI	YACGTR	2 cut(s)	954, 1692
BsaJI	CCNNGG	4 cut(s)	250, 260, 286, 782
BsaWI	WCCGGW	1 cut(s)	2280
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 1001, 1031
Bsc4I	CCNNNNNNNGG	5 cut(s)	1135, 1183, 1534, 1792, 1840
Bse3DI	GCAATG	3 cut(s)	1011, 1119, 1224
BseDI	CCNNGG	4 cut(s)	250, 260, 286, 782
BseGI	GGATG	6 cut(s)	421, 616, 976, 1213, 1419, 2306
BseLI	CCNNNNNNNGG	5 cut(s)	1135, 1183, 1534, 1792, 1840
BseMI	GCAATG	3 cut(s)	1011, 1119, 1224
BseMII	CTCAG	7 cut(s)	113, 894, 1434, 1461, 1629, 1859, 2190
BseRI	GAGGAG	8 cut(s)	20, 40, 43, 149, 152, 271, 929, 1025
BseSI	GKGCMC	1 cut(s)	779
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	7 cut(s)	568, 886, 938, 1201, 1371, 1616, 2255
BseYI	CCCAGC	1 cut(s)	1199
BsgI	GTGCAG	1 cut(s)	1378
Bsh1236I	CGCG	3 cut(s)	223, 238, 252
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	6 cut(s)	231, 443, 567, 1118, 1404, 1754
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	1183, 1614
BsiSI	CCGG	7 cut(s)	568, 825, 1364, 2099, 2167, 2193, 2281
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	5 cut(s)	1135, 1183, 1534, 1792, 1840
BsmAI	GTCTC	2 cut(s)	990, 2151
BsmBI	CGTCTC	1 cut(s)	2151
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	3 cut(s)	549, 1912, 2435
BsnI	GGCC	6 cut(s)	231, 443, 567, 1118, 1404, 1754
BsoBI	CYCGRG	2 cut(s)	1183, 1614
Bsp1286I	GDGCHC	2 cut(s)	159, 779
Bsp1407I	TGTACA	2 cut(s)	2022, 2028
Bsp143I	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
BspACI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
BspANI	GGCC	6 cut(s)	231, 443, 567, 1118, 1404, 1754
BspCNI	CTCAG	7 cut(s)	112, 895, 1433, 1462, 1630, 1860, 2189
BspFNI	CGCG	3 cut(s)	223, 238, 252
BspHI	TCATGA	1 cut(s)	1971
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	2399
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	3 cut(s)	1011, 1119, 1224
BsrGI	TGTACA	2 cut(s)	2022, 2028
BssECI	CCNNGG	4 cut(s)	250, 260, 286, 782
BssMI	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
BssT1I	CCWWGG	3 cut(s)	260, 286, 782
Bst4CI	ACNGT	5 cut(s)	506, 1298, 1635, 2033, 2122
Bst6I	CTCTTC	6 cut(s)	30, 708, 812, 1332, 1445, 1707
BstAPI	GCANNNNNTGC	2 cut(s)	935, 2240
BstAUI	TGTACA	2 cut(s)	2022, 2028
BstBAI	YACGTR	2 cut(s)	954, 1692
BstC8I	GCNNGC	7 cut(s)	221, 236, 257, 725, 1256, 1742, 2351
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	6 cut(s)	421, 616, 976, 1213, 1419, 2306
BstFNI	CGCG	3 cut(s)	223, 238, 252
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	5 cut(s)	1344, 1962, 2292, 2407, 2446
BstMAI	GTCTC	2 cut(s)	990, 2151
BstMBI	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1601, 1610, 2240
BstNSI	RCATGY	4 cut(s)	1353, 1744, 1856, 2029
BstSCI	CCNGG	5 cut(s)	567, 824, 1362, 2165, 2192
BstSLI	GKGCMC	1 cut(s)	779
BstSNI	TACGTA	2 cut(s)	954, 1692
BstUI	CGCG	3 cut(s)	223, 238, 252
BstV1I	GCAGC	7 cut(s)	568, 886, 938, 1201, 1371, 1616, 2255
BstX2I	RGATCY	1 cut(s)	1959
BstXI	CCANNNNNNTGG	1 cut(s)	2275
BstYI	RGATCY	1 cut(s)	1959
BstZI	CGGCCG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	1471
BsuRI	GGCC	6 cut(s)	231, 443, 567, 1118, 1404, 1754
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	6 cut(s)	421, 616, 976, 1213, 1419, 2306
BtsI	GCAGTG	1 cut(s)	1401
BtsIMutI	CAGTG	3 cut(s)	1314, 1401, 1504
Cac8I	GCNNGC	7 cut(s)	221, 236, 257, 725, 1256, 1742, 2351
CciI	TCATGA	1 cut(s)	1971
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	4 cut(s)	264, 565, 1117, 2278
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	1 cut(s)	2168
Csp6I	GTAC	5 cut(s)	1269, 2023, 2029, 2284, 2344
CviQI	GTAC	5 cut(s)	1269, 2023, 2029, 2284, 2344
DpnI	GATC	5 cut(s)	1343, 1961, 2291, 2406, 2445
DpnII	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
DriI	GACNNNNNGTC	2 cut(s)	406, 508
EaeI	YGGCCR	3 cut(s)	229, 1402, 1752
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	6 cut(s)	30, 708, 812, 1332, 1445, 1707
Eam1105I	GACNNNNNGTC	2 cut(s)	406, 508
EarI	CTCTTC	6 cut(s)	30, 708, 812, 1332, 1445, 1707
EciI	GGCGGA	1 cut(s)	1006
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	229
Eco105I	TACGTA	2 cut(s)	954, 1692
Eco130I	CCWWGG	3 cut(s)	260, 286, 782
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	2 cut(s)	264, 2278
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	2061
Eco88I	CYCGRG	2 cut(s)	1183, 1614
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	3 cut(s)	260, 286, 782
EcoT22I	ATGCAT	1 cut(s)	1746
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	260, 286, 782
Esp3I	CGTCTC	1 cut(s)	2151
FaqI	GGGAC	1 cut(s)	250
FauI	CCCGC	2 cut(s)	224, 870
FbaI	TGATCA	1 cut(s)	2289
Fnu4HI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1215, 1360, 1605, 2244
FokI	GGATG	6 cut(s)	428, 623, 983, 1220, 1426, 2313
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1215, 1360, 1605, 2244
FspBI	CTAG	6 cut(s)	302, 341, 362, 663, 1814, 1995
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1215, 1360, 1605, 2244
GsaI	CCCAGC	1 cut(s)	1203
GsuI	CTGGAG	2 cut(s)	1557, 2187
HaeIII	GGCC	6 cut(s)	231, 443, 567, 1118, 1404, 1754
HapII	CCGG	7 cut(s)	568, 825, 1364, 2099, 2167, 2193, 2281
HgaI	GACGC	1 cut(s)	2168
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	2386
HindII	GTYRAC	1 cut(s)	2386
HpaII	CCGG	7 cut(s)	568, 825, 1364, 2099, 2167, 2193, 2281
HphI	GGTGA	3 cut(s)	130, 312, 1878
Hpy166II	GTNNAC	4 cut(s)	602, 1314, 2306, 2386
Hpy188I	TCNGA	7 cut(s)	1423, 1442, 1639, 1932, 2041, 2059, 2179
Hpy8I	GTNNAC	4 cut(s)	602, 1314, 2306, 2386
HpyAV	CCTTC	7 cut(s)	73, 454, 1189, 1198, 1867, 2080, 2402
HpyCH4III	ACNGT	5 cut(s)	506, 1298, 1635, 2033, 2122
HpyCH4IV	ACGT	3 cut(s)	496, 953, 1691
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1601, 1610, 2240
HpySE526I	ACGT	3 cut(s)	496, 953, 1691
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	2289
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
LmnI	GCTCC	3 cut(s)	162, 1030, 2206
Lsp1109I	GCAGC	7 cut(s)	568, 886, 938, 1201, 1371, 1616, 2255
LweI	GCATC	2 cut(s)	234, 1281
MaeI	CTAG	6 cut(s)	302, 341, 362, 663, 1814, 1995
MaeII	ACGT	3 cut(s)	496, 953, 1691
MaeIII	GTNAC	6 cut(s)	239, 497, 949, 1298, 1372, 1985
MalI	GATC	5 cut(s)	1343, 1961, 2291, 2406, 2445
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
MflI	RGATCY	1 cut(s)	1959
MhlI	GDGCHC	2 cut(s)	159, 779
MlsI	TGGCCA	1 cut(s)	1404
MluCI	AATT	6 cut(s)	144, 455, 1066, 1566, 1776, 2106
MluNI	TGGCCA	1 cut(s)	1404
MlyI	GAGTC	6 cut(s)	236, 270, 299, 395, 518, 1412
MmeI	TCCRAC	4 cut(s)	270, 948, 1821, 1910
Mox20I	TGGCCA	1 cut(s)	1404
Mph1103I	ATGCAT	1 cut(s)	1746
MroXI	GAANNNNTTC	2 cut(s)	351, 2064
MscI	TGGCCA	1 cut(s)	1404
MseI	TTAA	9 cut(s)	489, 699, 795, 1035, 1149, 1275, 1287, 1485, 1799
MslI	CAYNNNNRTG	5 cut(s)	609, 1319, 1354, 1713, 2273
Msp20I	TGGCCA	1 cut(s)	1404
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	7 cut(s)	568, 825, 1364, 2099, 2167, 2193, 2281
MspR9I	CCNGG	5 cut(s)	569, 826, 1364, 2167, 2194
Mva1269I	GAATGC	3 cut(s)	549, 1912, 2435
MvnI	CGCG	3 cut(s)	223, 238, 252
MwoI	GCNNNNNNNGC	7 cut(s)	216, 231, 830, 935, 1601, 1610, 2240
NciI	CCSGG	5 cut(s)	569, 826, 1364, 2167, 2194
NdeII	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	967
NmuCI	GTSAC	2 cut(s)	239, 497
NsiI	ATGCAT	1 cut(s)	1746
NspI	RCATGY	4 cut(s)	1353, 1744, 1856, 2029
PaeI	GCATGC	1 cut(s)	1744
PaeR7I	CTCGAG	1 cut(s)	1614
PagI	TCATGA	1 cut(s)	1971
PciI	ACATGT	2 cut(s)	1349, 2025
PctI	GAATGC	3 cut(s)	549, 1912, 2435
PdmI	GAANNNNTTC	2 cut(s)	351, 2064
PfeI	GAWTC	4 cut(s)	329, 839, 1968, 2249
PflMI	CCANNNNNTGG	3 cut(s)	1135, 1534, 1792
PfoI	TCCNGGA	2 cut(s)	2165, 2192
PkrI	GCNGC	9 cut(s)	233, 254, 583, 901, 928, 1216, 1361, 1606, 2245
PleI	GAGTC	6 cut(s)	236, 270, 299, 395, 517, 1412
PpsI	GAGTC	6 cut(s)	236, 270, 299, 395, 517, 1412
Ppu21I	YACGTR	2 cut(s)	954, 1692
PscI	ACATGT	2 cut(s)	1349, 2025
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	1199
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	4 cut(s)	264, 565, 1117, 2278
PspXI	VCTCGAGB	1 cut(s)	1614
PsuI	RGATCY	1 cut(s)	1959
RsaI	GTAC	5 cut(s)	1270, 2024, 2030, 2285, 2345
RsaNI	GTAC	5 cut(s)	1269, 2023, 2029, 2284, 2344
RseI	CAYNNNNRTG	5 cut(s)	609, 1319, 1354, 1713, 2273
SacI	GAGCTC	1 cut(s)	159
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	9 cut(s)	489, 699, 795, 1035, 1149, 1275, 1287, 1485, 1799
SatI	GCNGC	9 cut(s)	232, 253, 582, 900, 927, 1215, 1360, 1605, 2244
Sau3AI	GATC	5 cut(s)	1341, 1959, 2289, 2404, 2443
Sau96I	GGNCC	4 cut(s)	264, 565, 1117, 2278
SchI	GAGTC	6 cut(s)	236, 270, 299, 395, 518, 1412
ScrFI	CCNGG	5 cut(s)	569, 826, 1364, 2167, 2194
SduI	GDGCHC	2 cut(s)	159, 779
SfaNI	GCATC	2 cut(s)	234, 1281
Sfr274I	CTCGAG	1 cut(s)	1614
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	2 cut(s)	264, 2278
SlaI	CTCGAG	1 cut(s)	1614
SmiMI	CAYNNNNRTG	5 cut(s)	609, 1319, 1354, 1713, 2273
SmlI	CTYRAG	2 cut(s)	1614, 1963
SmoI	CTYRAG	2 cut(s)	1614, 1963
SnaBI	TACGTA	2 cut(s)	954, 1692
SphI	GCATGC	1 cut(s)	1744
Sse9I	AATT	6 cut(s)	144, 455, 1066, 1566, 1776, 2106
SsiI	CCGC	7 cut(s)	208, 217, 232, 250, 252, 877, 991
SspMI	CTAG	6 cut(s)	302, 341, 362, 663, 1814, 1995
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	5 cut(s)	567, 824, 1362, 2165, 2192
StyI	CCWWGG	3 cut(s)	260, 286, 782
TaaI	ACNGT	5 cut(s)	506, 1298, 1635, 2033, 2122
TaiI	ACGT	3 cut(s)	499, 956, 1694
TaqI	TCGA	3 cut(s)	575, 1615, 2359
TasI	AATT	6 cut(s)	144, 455, 1066, 1566, 1776, 2106
TatI	WGTACW	2 cut(s)	2022, 2028
TauI	GCSGC	2 cut(s)	234, 255
TfiI	GAWTC	4 cut(s)	329, 839, 1968, 2249
Tru1I	TTAA	9 cut(s)	489, 699, 795, 1035, 1149, 1275, 1287, 1485, 1799
Tru9I	TTAA	9 cut(s)	489, 699, 795, 1035, 1149, 1275, 1287, 1485, 1799
TscAI	CASTG	3 cut(s)	1321, 1401, 1504
TseFI	GTSAC	2 cut(s)	239, 497
TseI	GCWGC	7 cut(s)	581, 899, 926, 1214, 1359, 1604, 2243
Tsp45I	GTSAC	2 cut(s)	239, 497
TspRI	CASTG	3 cut(s)	1321, 1401, 1504
Van91I	CCANNNNNTGG	3 cut(s)	1135, 1534, 1792
VpaK11BI	GGWCC	2 cut(s)	264, 2278
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	4 cut(s)	1353, 1744, 1856, 2029
XhoI	CTCGAG	1 cut(s)	1614
XmnI	GAANNNNTTC	2 cut(s)	351, 2064
XspI	CTAG	6 cut(s)	302, 341, 362, 663, 1814, 1995
Zsp2I	ATGCAT	1 cut(s)	1746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.