Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011141

Physical Location & Seq

Genomic Coordinates Reverse (-)

5945623 .. 5949539

Gene Structure 3917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGGCTGACAAAATGGCTCTCCCTCTTCTCCTCCCTAACCCACCTCCCTCCTCCTCTAAACCCTTCTTCCCCAACCACCACCACCACCACCACCAAACCCAAAACTCCTCTCAGCCACCACCATTACCACCACCTCCACCACCACCCATCACCCCAATTCTCCAAGAGCTCCTCCTCCACCCAAACCCTTCAACCCCTCAATCCCAACACCCTACTTATCGCAGAACCCGCACGCGCATCGGCCGCTCGCGTGACTCCAACCGCGGCAAGCCCTGGTCCCACCACCGCCTCTCCTCCCAAGGTCAGCACATCCTAGACTCCTTAATCAACTCCCCCTTTGACTCCTCTAAGCTAGATGAACAGCTTCACAGTCTAGTTGAGTTGCATAGTGTTGAGTTTGGGTCTAACACGGACTCTTTGTCTTTGGATGTTCTGGGTATTGTCAAAGGCTTAGCCTTTCACAAGAAATTTGAGTTGGCTGTGAGTGTGTTTGAGTGGTTTAAGAAACGTGATGACTGTGAGTCCATTTTGAGTGGTTCTGTTGTTTCTGTGGTTATTAGCATTCTTGGTAAGATGGGCCGGGTTTCGAGTGCTGCTTCTTTGTTTAGAAGTTTACATAAGGATGGATTTGCTCTTGATGTTTATGCTTACACTTCTTTGATTACTGCTTGTGCTAGTAATGGGAGGTATAGGGAGGCTGTTTCGGTTTTTAAGAAAATGGAGGAAGAGGGTTGCAAGCCCACTTTGATAACTTACAATGTGGTTTTGAACGTGTATGGGAAAATGGGCACCCCTTGGCATAAGATTAAAGCTATTGTTGAGGGTATGAGGAGTGCCGGGATTGCCCCGGATTCTTATACTTATAACACGCTTATAACTTGTTGTCGGAGGGGGTCTCTGTATGTAGAGGCTGCCGAGGTTTTTGAGGAGATGAAAGCAGCAGGATTTGCACCTGATAAGGTTACGTATAACGCGTTGTTGGATGTTTATGGGAAGTCCCGGCGGACTAAGGAAGCAATGGAGGTGTTGAAAGATATGGAGGTTAATGGGTTTTCTCCGAGCATTGTGTCTTACAATTCGTTGATATCAGCGTATGCAAGAGATGGTTTATTGGAGGAAGCAATGGCCCTGAAAACCCAGATGGTGGAAAGGGGGATTAAACCCGATGTTTTTACCTACACCACCCTTTTCTCGGGATATGAGAAGGCTGGGAAGGATGAGGCTGCAATGAGGGTTTTTGAGGAGATGAAAGGTTCTGGTTGCAAGCCAAACATTTGTACCTTTAATGCCCTTATTAAGATGCACGGTAACAGGGGAAAGTTCACAGAAATGATGAATGTTCTTGAAGAGATCAACACATGTAAGTGCACCCCGGATATTGTTACTTGGAATACACTTTTGGCAGTGTTTGGCCAAAACGGGATGGACTCAGAGGTGTCGGGAGTGTTCAGAGAGATGAAGAGGGCAGGATTTGTTCCTGAGAGGGATACTTTTAACACTCTAATCAGTGCATACAGCCGTTGTGGTTCTTTTGACCAAGCTGTGGAGGTGTATAAGAGTATGCAAGAAGCTGGAATTACTCCAGACCTTTCCTCATATAATGCTGTTTTGGCAGCATTGGCTCGAGGTGGGCTTTGGGAACAATCTGAGAAAATACTTGCTGAAATGAAGAATGGTCGTTGCAAACCCAACGAGCTTACATATAGTTCTCTTCTCCATGCTTATGCCAATGGGAAAGAAATGGAACGCATGCATATTCTGGCTGAAGAAATATACTCTGCTGTAATTGAACCCCACGCTGTGGTCTTAAAGACACTTGTTCTAGTTTTTAGTAAAAGCGACCTATTGTTGGAAACAGAACATGCCTTCTTGGAACTGAGAAAGAAAGGGTTTTCACCTGACATAACTACGCTGAATGCCATGTTATCAATATATGGTCGGAGGCAGATGGTTTCAAAAGCAAGTGAGATCTTGAGATTCATGAATGAGATGGGTTACACTCCTAGCTTGACAACTTACAATAGTGTGATGTATATGTACAGTCGCTCAGAAGATTTTGAGAAATCGGAAACTTTTCTAAGGGAGATTATGGAGAAGGGAATAAAGCCGGATATAATTTCCTACAATACTGTTATCTATGCTTATTGTAGAAATGGTCGTATGAGAGATGCTTCCCGGATATTCTCAGAGATGAGTGCTTCCGGCATTGCTCCAGATGTAATCACTTACAACACCTTTGTGGCAAGTTATGCGGCCGATTCATTGTTTGTTGAAGCCATTGATGTGGTCCGGTACATGATCAAGCATGGGTGTAAACCCAACCAGAACACATACAACTCCATTGTAGATTGGTACTGCAAGCACAATCGACAAGACGAGGGAAAGAAGTTTGTTGACAACCTTCGCAATCTTGATCCACATATTGCTAAGGGTGAGGAATGCAGATTATTAGACCGTATTAGAAATAAATGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

825

Amino Acids

92.82

Weight (kDa)

8.02

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	181 - 310	4.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	200 - 262	1.8e-20	Pentatricopeptide repeat domain
PPR_2	PF13041	213 - 259	3.5e-13	PPR repeat family
PPR	PF01535	216 - 245	5.8e-09	PPR repeat
PPR_2	PF13041	247 - 295	4.9e-09	PPR repeat family
PPR_3	PF13812	272 - 332	5.3e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	275 - 406	2.9e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	294 - 328	7.3e-06	PPR repeat family
PPR_1	PF12854	315 - 347	4.7e-07	PPR repeat
PPR_2	PF13041	318 - 354	6.9e-08	PPR repeat family
PPR	PF01535	321 - 351	2.7e-07	PPR repeat
PPR_1	PF12854	349 - 382	6.8e-08	PPR repeat
PPR_2	PF13041	353 - 400	1.2e-16	PPR repeat family
PPR	PF01535	356 - 386	8.3e-08	PPR repeat
PPR_3	PF13812	377 - 438	1.3e-21	Pentatricopeptide repeat domain
PPR_1	PF12854	384 - 417	6e-08	PPR repeat
PPR	PF01535	391 - 421	3.9e-07	PPR repeat
PPR_2	PF13041	391 - 434	2.4e-12	PPR repeat family
TPR_24	PF23276	403 - 521	1.4e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	458 - 499	1.2e-06	PPR repeat family
PPR	PF01535	461 - 491	4.5e-06	PPR repeat
PPR_long	PF17177	478 - 605	1.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	482 - 539	6.2e-10	Pentatricopeptide repeat domain
PPR	PF01535	497 - 526	8.9e-08	PPR repeat
PPR_2	PF13041	497 - 542	4.9e-11	PPR repeat family
PPR_3	PF13812	518 - 576	3.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	528 - 577	6.3e-11	PPR repeat family
PPR_3	PF13812	625 - 680	2.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	633 - 680	5e-06	PPR repeat family
PPR_3	PF13812	693 - 747	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	699 - 732	3.2e-12	PPR repeat
PPR_2	PF13041	703 - 749	1.8e-15	PPR repeat family
PPR	PF01535	706 - 736	5e-08	PPR repeat
PPR_2	PF13041	738 - 787	5.8e-12	PPR repeat family
PPR_1	PF12854	769 - 799	2.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02860 AT5G02860 AT5G02860 AT5G02860 AT5G02860
fragaria_vesca	FvH4_2g04590
malus_domestica	MD10G1101600.v1.1
prunus_persica	Prupe.8G139200_v2.0.a1
pyrus_communis	pycom10g08710
rosa_chinensis	RchiOBHm_Chr6g0254201
rosa_laevigata	RLG00000014936
rosa_multiflora	Rmu_sc0000010.1_g000016 Rmu_sc0003711.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211090
rosa_rugosa	Rorug05G0550600
rosa_samantha	Rh6AG067000 Rh6BG060100 Rh6CG059900 Rh6DG056900
rosa_wichuraiana	Rw6G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	864, 875
AccB1I	GGYRCC	1 cut(s)	788
AccB7I	CCANNNNNTGG	3 cut(s)	1144, 1543, 1801
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	4 cut(s)	235, 250, 264, 974
AciI	CCGC	7 cut(s)	229, 244, 262, 264, 286, 1003, 2252
AclWI	GGATC	1 cut(s)	2408
AcoI	YGGCCR	3 cut(s)	241, 1411, 2253
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	1785
AdeI	CACNNNGTG	1 cut(s)	1801
AfaI	GTAC	4 cut(s)	1279, 2039, 2294, 2354
AfiI	CCNNNNNNNGG	5 cut(s)	1144, 1192, 1543, 1801, 1849
AflIII	ACRYGT	3 cut(s)	771, 972, 1358
AgsI	TTSAA	7 cut(s)	192, 769, 1030, 1346, 1790, 1956, 2273
AhdI	GACNNNNNGTC	2 cut(s)	418, 520
AjnI	CCWGG	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	4 cut(s)	458, 490, 1382, 1414
AleI	CACNNNNGTG	1 cut(s)	2237
AluBI	AGCT	8 cut(s)	169, 352, 364, 812, 1541, 1571, 1696, 2007
AluI	AGCT	8 cut(s)	169, 352, 364, 812, 1541, 1571, 1696, 2007
Alw21I	GWGCWC	2 cut(s)	171, 1370
Alw26I	GTCTC	1 cut(s)	900
Alw44I	GTGCAC	1 cut(s)	1366
AlwI	GGATC	1 cut(s)	2408
Ama87I	CYCGRG	2 cut(s)	1192, 1623
AoxI	GGCC	5 cut(s)	241, 577, 1125, 1411, 2253
ApaLI	GTGCAC	1 cut(s)	1366
ApeKI	GCWGC	5 cut(s)	593, 911, 938, 1223, 1613
ApoI	RAATTY	1 cut(s)	467
Asp700I	GAANNNNTTC	2 cut(s)	363, 2073
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	276, 577, 1126, 2287
AsuC2I	CCSGG	6 cut(s)	581, 838, 848, 1000, 1373, 2176
AsuHPI	GGTGA	3 cut(s)	142, 1887, 2444
AvaI	CYCGRG	2 cut(s)	1192, 1623
AvaII	GGWCC	2 cut(s)	276, 2287
BaeGI	GKGCMC	2 cut(s)	791, 1370
BaeI	ACNNNNGTAYC	2 cut(s)	1261, 1294
BalI	TGGCCA	1 cut(s)	1413
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	171, 1370
BbvI	GCAGC	5 cut(s)	580, 898, 950, 1210, 1625
BccI	CCATC	8 cut(s)	155, 568, 617, 1097, 1135, 1417, 1942, 1984
BceAI	ACGGC	1 cut(s)	1503
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	274
BciVI	GTATCC	1 cut(s)	1480
BclI	TGATCA	1 cut(s)	2298
BcnI	CCSGG	6 cut(s)	581, 838, 848, 1000, 1373, 2176
BcoDI	GTCTC	1 cut(s)	900
BfaI	CTAG	6 cut(s)	314, 353, 374, 675, 1823, 2004
BfuI	GTATCC	1 cut(s)	1480
BglII	AGATCT	1 cut(s)	1968
BisI	GCNGC	8 cut(s)	244, 265, 594, 912, 939, 1224, 1614, 2253
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	8 cut(s)	245, 266, 595, 913, 940, 1225, 1615, 2254
Bme1390I	CCNGG	7 cut(s)	274, 581, 838, 848, 1000, 1373, 2176
Bme18I	GGWCC	2 cut(s)	276, 2287
BmeRI	GACNNNNNGTC	2 cut(s)	418, 520
BmeT110I	CYCGRG	2 cut(s)	1192, 1623
BmgT120I	GGNCC	4 cut(s)	276, 577, 1126, 2287
BmiI	GGNNCC	2 cut(s)	278, 790
BmrFI	CCNGG	7 cut(s)	274, 581, 838, 848, 1000, 1373, 2176
BmsI	GCATC	3 cut(s)	246, 1290, 2158
BplI	GAGNNNNNCTC	2 cut(s)	880, 912
BpmI	CTGGAG	2 cut(s)	1566, 2196
Bpu10I	CCTNAGC	1 cut(s)	2427
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	1993
BpuMI	CCSGG	6 cut(s)	581, 838, 848, 1000, 1373, 2176
BsaAI	YACGTR	1 cut(s)	966
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	7 cut(s)	262, 272, 298, 794, 846, 915, 1371
BsaWI	WCCGGW	1 cut(s)	2289
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	1144, 1192, 1543, 1801, 1849
Bse3DI	GCAATG	4 cut(s)	1023, 1128, 1233, 2205
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	7 cut(s)	262, 272, 298, 794, 846, 915, 1371
BseGI	GGATG	6 cut(s)	309, 433, 628, 988, 1222, 1428
BseLI	CCNNNNNNNGG	5 cut(s)	1144, 1192, 1543, 1801, 1849
BseMI	GCAATG	4 cut(s)	1023, 1128, 1233, 2205
BseMII	CTCAG	7 cut(s)	125, 1443, 1470, 1638, 1868, 2061, 2199
BseSI	GKGCMC	2 cut(s)	791, 1370
BseX3I	CGGCCG	2 cut(s)	241, 2253
BseXI	GCAGC	5 cut(s)	580, 898, 950, 1210, 1625
BseYI	CCCAGC	1 cut(s)	1208
Bsh1236I	CGCG	4 cut(s)	235, 250, 264, 974
Bsh1285I	CGRYCG	2 cut(s)	244, 2256
BshFI	GGCC	5 cut(s)	243, 579, 1127, 1413, 2255
BshNI	GGYRCC	1 cut(s)	788
BsiEI	CGRYCG	2 cut(s)	244, 2256
BsiHKAI	GWGCWC	2 cut(s)	171, 1370
BsiHKCI	CYCGRG	2 cut(s)	1192, 1623
BsiSI	CCGG	9 cut(s)	580, 837, 848, 1000, 1373, 2108, 2176, 2202, 2290
BslFI	GGGAC	2 cut(s)	262, 982
BslI	CCNNNNNNNGG	5 cut(s)	1144, 1192, 1543, 1801, 1849
BsmAI	GTCTC	1 cut(s)	900
BsmFI	GGGAC	2 cut(s)	262, 982
BsmI	GAATGC	3 cut(s)	561, 1921, 2444
BsnI	GGCC	5 cut(s)	243, 579, 1127, 1413, 2255
Bso31I	GGTCTC	1 cut(s)	900
BsoBI	CYCGRG	2 cut(s)	1192, 1623
Bsp1286I	GDGCHC	3 cut(s)	171, 791, 1370
Bsp1407I	TGTACA	1 cut(s)	2037
Bsp143I	GATC	4 cut(s)	1350, 1968, 2298, 2413
Bsp1720I	GCTNAGC	1 cut(s)	451
BspACI	CCGC	7 cut(s)	229, 244, 262, 264, 286, 1003, 2252
BspANI	GGCC	5 cut(s)	243, 579, 1127, 1413, 2255
BspCNI	CTCAG	7 cut(s)	124, 1442, 1471, 1639, 1869, 2060, 2198
BspFNI	CGCG	4 cut(s)	235, 250, 264, 974
BspHI	TCATGA	1 cut(s)	1980
BspLI	GGNNCC	2 cut(s)	278, 790
BspPI	GGATC	1 cut(s)	2408
BspT107I	GGYRCC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	900
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	4 cut(s)	1023, 1128, 1233, 2205
BsrGI	TGTACA	1 cut(s)	2037
BssECI	CCNNGG	7 cut(s)	262, 272, 298, 794, 846, 915, 1371
BssMI	GATC	4 cut(s)	1350, 1968, 2298, 2413
BssT1I	CCWWGG	2 cut(s)	298, 794
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	6 cut(s)	371, 518, 1307, 2042, 2131, 2456
Bst6I	CTCTTC	5 cut(s)	30, 720, 1341, 1454, 1716
BstAPI	GCANNNNNTGC	2 cut(s)	947, 2249
BstAUI	TGTACA	1 cut(s)	2037
BstBAI	YACGTR	1 cut(s)	966
BstC8I	GCNNGC	7 cut(s)	233, 248, 269, 737, 1265, 1751, 2360
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	6 cut(s)	309, 433, 628, 988, 1222, 1428
BstFNI	CGCG	4 cut(s)	235, 250, 264, 974
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	1353, 1971, 2301, 2416
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	4 cut(s)	1350, 1968, 2298, 2413
BstMCI	CGRYCG	2 cut(s)	244, 2256
BstMWI	GCNNNNNNNGC	7 cut(s)	228, 243, 842, 947, 1610, 1619, 2249
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	3 cut(s)	1362, 1753, 1865
BstSCI	CCNGG	7 cut(s)	272, 579, 836, 846, 998, 1371, 2174
BstSLI	GKGCMC	2 cut(s)	791, 1370
BstSNI	TACGTA	1 cut(s)	966
BstUI	CGCG	4 cut(s)	235, 250, 264, 974
BstV1I	GCAGC	5 cut(s)	580, 898, 950, 1210, 1625
BstX2I	RGATCY	1 cut(s)	1968
BstXI	CCANNNNNNTGG	1 cut(s)	2284
BstYI	RGATCY	1 cut(s)	1968
BstZI	CGGCCG	2 cut(s)	241, 2253
BsuI	GTATCC	1 cut(s)	1480
BsuRI	GGCC	5 cut(s)	243, 579, 1127, 1413, 2255
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	6 cut(s)	309, 433, 628, 988, 1222, 1428
BtsI	GCAGTG	1 cut(s)	1410
BtsIMutI	CAGTG	2 cut(s)	1410, 1513
Cac8I	GCNNGC	7 cut(s)	233, 248, 269, 737, 1265, 1751, 2360
CciI	TCATGA	1 cut(s)	1980
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	4 cut(s)	276, 577, 1126, 2287
Cfr42I	CCGCGG	1 cut(s)	265
Csp6I	GTAC	4 cut(s)	1278, 2038, 2293, 2353
CviAII	CATG	8 cut(s)	1359, 1718, 1750, 1862, 1921, 1981, 2296, 2306
CviQI	GTAC	4 cut(s)	1278, 2038, 2293, 2353
DpnI	GATC	4 cut(s)	1352, 1970, 2300, 2415
DpnII	GATC	4 cut(s)	1350, 1968, 2298, 2413
DraIII	CACNNNGTG	1 cut(s)	1801
DriI	GACNNNNNGTC	2 cut(s)	418, 520
EaeI	YGGCCR	3 cut(s)	241, 1411, 2253
EagI	CGGCCG	2 cut(s)	241, 2253
Eam1104I	CTCTTC	5 cut(s)	30, 720, 1341, 1454, 1716
Eam1105I	GACNNNNNGTC	2 cut(s)	418, 520
EarI	CTCTTC	5 cut(s)	30, 720, 1341, 1454, 1716
EciI	GGCGGA	1 cut(s)	1018
Ecl136II	GAGCTC	1 cut(s)	169
EclXI	CGGCCG	2 cut(s)	241, 2253
Eco105I	TACGTA	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	298, 794
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	900
Eco32I	GATATC	1 cut(s)	1086
Eco47I	GGWCC	2 cut(s)	276, 2287
Eco52I	CGGCCG	2 cut(s)	241, 2253
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	1785
Eco88I	CYCGRG	2 cut(s)	1192, 1623
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	1086
EcoT14I	CCWWGG	2 cut(s)	298, 794
EcoT22I	ATGCAT	1 cut(s)	1755
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	298, 794
FaeI	CATG	8 cut(s)	1362, 1721, 1753, 1865, 1924, 1984, 2299, 2309
FaqI	GGGAC	2 cut(s)	262, 982
FatI	CATG	8 cut(s)	1358, 1717, 1749, 1861, 1920, 1980, 2295, 2305
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	2298
Fnu4HI	GCNGC	8 cut(s)	244, 265, 594, 912, 939, 1224, 1614, 2253
FokI	GGATG	6 cut(s)	296, 440, 635, 995, 1229, 1435
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	8 cut(s)	244, 265, 594, 912, 939, 1224, 1614, 2253
FspBI	CTAG	6 cut(s)	314, 353, 374, 675, 1823, 2004
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	8 cut(s)	244, 265, 594, 912, 939, 1224, 1614, 2253
GsaI	CCCAGC	1 cut(s)	1212
GsuI	CTGGAG	2 cut(s)	1566, 2196
HaeIII	GGCC	5 cut(s)	243, 579, 1127, 1413, 2255
HapII	CCGG	9 cut(s)	580, 837, 848, 1000, 1373, 2108, 2176, 2202, 2290
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	8 cut(s)	1362, 1721, 1753, 1865, 1924, 1984, 2299, 2309
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	2395
HindII	GTYRAC	1 cut(s)	2395
HinfI	GANTC	9 cut(s)	254, 317, 341, 413, 521, 851, 1427, 1977, 2258
HpaII	CCGG	9 cut(s)	580, 837, 848, 1000, 1373, 2108, 2176, 2202, 2290
HphI	GGTGA	3 cut(s)	142, 1887, 2444
Hpy166II	GTNNAC	5 cut(s)	614, 1323, 1368, 2315, 2395
Hpy188I	TCNGA	9 cut(s)	888, 1059, 1432, 1451, 1648, 1941, 2050, 2068, 2188
Hpy8I	GTNNAC	5 cut(s)	614, 1323, 1368, 2315, 2395
HpyAV	CCTTC	7 cut(s)	73, 198, 1198, 1207, 1876, 2089, 2411
HpyCH4III	ACNGT	6 cut(s)	371, 518, 1307, 2042, 2131, 2456
HpyCH4IV	ACGT	3 cut(s)	508, 771, 965
HpyF10VI	GCNNNNNNNGC	7 cut(s)	228, 243, 842, 947, 1610, 1619, 2249
HpySE526I	ACGT	3 cut(s)	508, 771, 965
Hsp92II	CATG	8 cut(s)	1362, 1721, 1753, 1865, 1924, 1984, 2299, 2309
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	2298
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	1350, 1968, 2298, 2413
LmnI	GCTCC	2 cut(s)	174, 2215
Lsp1109I	GCAGC	5 cut(s)	580, 898, 950, 1210, 1625
LweI	GCATC	3 cut(s)	246, 1290, 2158
MaeI	CTAG	6 cut(s)	314, 353, 374, 675, 1823, 2004
MaeII	ACGT	3 cut(s)	508, 771, 965
MaeIII	GTNAC	5 cut(s)	251, 961, 1307, 1381, 1994
MalI	GATC	4 cut(s)	1352, 1970, 2300, 2415
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	4 cut(s)	1350, 1968, 2298, 2413
MboII	GAAGA	9 cut(s)	17, 58, 737, 1358, 1471, 1681, 1703, 1778, 2063
MflI	RGATCY	1 cut(s)	1968
MhlI	GDGCHC	3 cut(s)	171, 791, 1370
MlsI	TGGCCA	1 cut(s)	1413
MluCI	AATT	6 cut(s)	156, 467, 1075, 1575, 1785, 2115
MluI	ACGCGT	1 cut(s)	972
MluNI	TGGCCA	1 cut(s)	1413
MlyI	GAGTC	6 cut(s)	248, 311, 335, 407, 530, 1421
MmeI	TCCRAC	5 cut(s)	282, 866, 960, 1830, 1919
Mox20I	TGGCCA	1 cut(s)	1413
Mph1103I	ATGCAT	1 cut(s)	1755
MroXI	GAANNNNTTC	2 cut(s)	363, 2073
MscI	TGGCCA	1 cut(s)	1413
MslI	CAYNNNNRTG	6 cut(s)	621, 1328, 1363, 1722, 2237, 2282
Msp20I	TGGCCA	1 cut(s)	1413
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	9 cut(s)	580, 837, 848, 1000, 1373, 2108, 2176, 2202, 2290
MspR9I	CCNGG	7 cut(s)	274, 581, 838, 848, 1000, 1373, 2176
Mva1269I	GAATGC	3 cut(s)	561, 1921, 2444
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	4 cut(s)	235, 250, 264, 974
MwoI	GCNNNNNNNGC	7 cut(s)	228, 243, 842, 947, 1610, 1619, 2249
NciI	CCSGG	6 cut(s)	581, 838, 848, 1000, 1373, 2176
NdeII	GATC	4 cut(s)	1350, 1968, 2298, 2413
NlaIII	CATG	8 cut(s)	1362, 1721, 1753, 1865, 1924, 1984, 2299, 2309
NlaIV	GGNNCC	2 cut(s)	278, 790
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	1755
NspI	RCATGY	3 cut(s)	1362, 1753, 1865
OliI	CACNNNNGTG	1 cut(s)	2237
PaeI	GCATGC	1 cut(s)	1753
PaeR7I	CTCGAG	1 cut(s)	1623
PagI	TCATGA	1 cut(s)	1980
PciI	ACATGT	1 cut(s)	1358
PcsI	WCGNNNNNNNCGW	1 cut(s)	971
PctI	GAATGC	3 cut(s)	561, 1921, 2444
PdmI	GAANNNNTTC	2 cut(s)	363, 2073
PfeI	GAWTC	3 cut(s)	851, 1977, 2258
PflMI	CCANNNNNTGG	3 cut(s)	1144, 1543, 1801
PfoI	TCCNGGA	1 cut(s)	2174
PkrI	GCNGC	8 cut(s)	245, 266, 595, 913, 940, 1225, 1615, 2254
PleI	GAGTC	6 cut(s)	248, 311, 335, 407, 529, 1421
PpsI	GAGTC	6 cut(s)	248, 311, 335, 407, 529, 1421
Ppu21I	YACGTR	1 cut(s)	966
PscI	ACATGT	1 cut(s)	1358
PsiI	TTATAA	2 cut(s)	864, 875
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	1208
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	278, 790
PspPI	GGNCC	4 cut(s)	276, 577, 1126, 2287
PspXI	VCTCGAGB	1 cut(s)	1623
PsuI	RGATCY	1 cut(s)	1968
RsaI	GTAC	4 cut(s)	1279, 2039, 2294, 2354
RsaNI	GTAC	4 cut(s)	1278, 2038, 2293, 2353
RseI	CAYNNNNRTG	6 cut(s)	621, 1328, 1363, 1722, 2237, 2282
SacI	GAGCTC	1 cut(s)	171
SacII	CCGCGG	1 cut(s)	265
SatI	GCNGC	8 cut(s)	244, 265, 594, 912, 939, 1224, 1614, 2253
Sau3AI	GATC	4 cut(s)	1350, 1968, 2298, 2413
Sau96I	GGNCC	4 cut(s)	276, 577, 1126, 2287
SchI	GAGTC	6 cut(s)	248, 311, 335, 407, 530, 1421
ScrFI	CCNGG	7 cut(s)	274, 581, 838, 848, 1000, 1373, 2176
SduI	GDGCHC	3 cut(s)	171, 791, 1370
SfaNI	GCATC	3 cut(s)	246, 1290, 2158
Sfr274I	CTCGAG	1 cut(s)	1623
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	276, 2287
SlaI	CTCGAG	1 cut(s)	1623
SmiMI	CAYNNNNRTG	6 cut(s)	621, 1328, 1363, 1722, 2237, 2282
SmlI	CTYRAG	2 cut(s)	1623, 1972
SmoI	CTYRAG	2 cut(s)	1623, 1972
SnaBI	TACGTA	1 cut(s)	966
SphI	GCATGC	1 cut(s)	1753
Sse9I	AATT	6 cut(s)	156, 467, 1075, 1575, 1785, 2115
SsiI	CCGC	7 cut(s)	229, 244, 262, 264, 286, 1003, 2252
SspMI	CTAG	6 cut(s)	314, 353, 374, 675, 1823, 2004
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	7 cut(s)	272, 579, 836, 846, 998, 1371, 2174
StyI	CCWWGG	2 cut(s)	298, 794
TaaI	ACNGT	6 cut(s)	371, 518, 1307, 2042, 2131, 2456
TaiI	ACGT	3 cut(s)	511, 774, 968
TaqI	TCGA	3 cut(s)	587, 1624, 2368
TasI	AATT	6 cut(s)	156, 467, 1075, 1575, 1785, 2115
TatI	WGTACW	1 cut(s)	2037
TauI	GCSGC	3 cut(s)	246, 267, 2255
TfiI	GAWTC	3 cut(s)	851, 1977, 2258
TscAI	CASTG	2 cut(s)	1410, 1513
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	593, 911, 938, 1223, 1613
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	9 cut(s)	372, 947, 1262, 1349, 1472, 1682, 1969, 1997, 2250
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	1410, 1513
Van91I	CCANNNNNTGG	3 cut(s)	1144, 1543, 1801
VneI	GTGCAC	1 cut(s)	1366
VpaK11BI	GGWCC	2 cut(s)	276, 2287
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	3 cut(s)	1362, 1753, 1865
XhoI	CTCGAG	1 cut(s)	1623
XmnI	GAANNNNTTC	2 cut(s)	363, 2073
XspI	CTAG	6 cut(s)	314, 353, 374, 675, 1823, 2004
Zsp2I	ATGCAT	1 cut(s)	1755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.