Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008840

Physical Location & Seq

Genomic Coordinates Reverse (-)

28068311 .. 28070024

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1186400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAAGACGAATCCTCGTATTACGACAGAACCAAGGAAGTGAAAGAGTTTGATGAAACGAAAGCCGGAGTTAAGGGCCTTGTGGACTCAGGGATCACAAAAGTCCCCAAGTTCCTCATTCATCCACCACATAGCCTTTCAAATTCAGAAACAACAAATGTAGACTTCAAGGTTCCTGTCATAGACTTTTACGGCTTTGATCAAGATTTCCGGCGAGCGCAGATTGTGAAGGAGATTTGTGAAGCATCCGAAACGTGGGGGTTCTTTCAAATGGTTAATCATGGAGTTCCAGAGAGAGTGATTGAGAATATGTTGGAAGGGATTCGAGGGTTTCATGAGCAGCCGAAGGAGTTGAAGATGGAGTGGTATTCTCGTGACTCGAAACATAGAGTGAGATACTACTGCAATGGAGATCTGTTGGTGTCGAAAACAGCGAATTGGAGAGACACGATAGGGTTTGATTTCCAGGACGGTCCATTGGACCCCGAGACATTTCCCTTCGTTTGCAGAGAGGCAGTGCAGGAGTACATCGATCACTTAAAGAACTTGAGGGAGATGCTATCAGGTTTGTTGTCCGAGGCCTTGGGGCTCAGCACTGACTACCTGGAAAACATAGAGTGCATGGAGACTGAAAATCTGGTGTGCCATTACTACCCGAGCTGTCCAGAACCGGAGCTGACCCTTGGCACAACCAAGCATTCGGATCCTTCCTCTTTAACTGTACTCTTGCAGGATAATCTCGGCGGCCTGCAAGTCCTCCATCAAGGTCACTGGGTTGATGTTCCTCCAACTCCTGGAGCTCTTGTGGCGAATGTCGGTGATCTTATGCAACTTATCACCAATGACAAGTTCAGAAGCGTCGAGCATAGAGTACTGGCTAGAAGAGTGGGGCCCAGGATCTCAGCTGCATGTTTTTTCTATCCAAGTGCTACGCAAAGATTCAAACCCTATGGCCCCATCAAGGAGTTTCTATCGGACAACCTACCGATATACAGGGAAACACACTTTGGGGAGTATCTTGCTTATTACAGATCAAAGGGGTTAGATGGTAATTCTGCCCTTTCTCATTTTAAATTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

41.18

Weight (kDa)

5.35

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 157	2.9e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 306	6.3e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830
malus_domestica	MD10G1186400.v1.1
prunus_persica	Prupe.8G226000_v2.0.a1
pyrus_communis	pycom10g16130
rosa_chinensis	RchiOBHm_Chr3g0455441 RchiOBHm_Chr6g0288551
rosa_laevigata	RLG00000012389 RLG00000025362
rosa_multiflora	Rmu_sc0002058.1_g000015 Rmu_sc0003728.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424280 Rroxscaffold_7G00179990
rosa_rugosa	Rorug03G0007600 Rorug06G0197000
rosa_samantha	Rh3AG067000 Rh3BG069300 Rh3CG067800 Rh3DG069300 Rh6BG314300 Rh6CG321600 Rh6DG307400
rosa_wichuraiana	Rw3G005290 Rw6G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	4 cut(s)	101, 698, 711, 905
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	3 cut(s)	527, 723, 873
AfiI	CCNNNNNNNGG	3 cut(s)	255, 794, 961
AgsI	TTSAA	5 cut(s)	141, 169, 269, 355, 943
AjnI	CCWGG	4 cut(s)	465, 603, 793, 893
AjuI	GAANNNNNNNTTGG	4 cut(s)	833, 865, 990, 1022
AluBI	AGCT	4 cut(s)	660, 676, 800, 905
AluI	AGCT	4 cut(s)	660, 676, 800, 905
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	3 cut(s)	438, 482, 620
AlwI	GGATC	4 cut(s)	101, 698, 711, 905
Ama87I	CYCGRG	2 cut(s)	485, 655
AoxI	GGCC	5 cut(s)	76, 579, 745, 890, 952
ApaI	GGGCCC	1 cut(s)	894
ApeKI	GCWGC	2 cut(s)	340, 905
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	6 cut(s)	76, 473, 481, 890, 891, 953
AsuHPI	GGTGA	2 cut(s)	829, 830
AvaI	CYCGRG	2 cut(s)	485, 655
AvaII	GGWCC	2 cut(s)	473, 481
BaeGI	GKGCMC	1 cut(s)	894
BamHI	GGATCC	1 cut(s)	703
BanII	GRGCYC	3 cut(s)	591, 802, 894
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	802
BbvI	GCAGC	2 cut(s)	352, 892
BccI	CCATC	4 cut(s)	352, 768, 965, 1040
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	4 cut(s)	467, 605, 795, 895
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	438, 482, 620
BfaI	CTAG	1 cut(s)	879
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	341, 745, 906
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	3 cut(s)	342, 746, 907
BmcAI	AGTACT	1 cut(s)	873
Bme1390I	CCNGG	4 cut(s)	467, 605, 795, 895
Bme18I	GGWCC	2 cut(s)	473, 481
BmeT110I	CYCGRG	2 cut(s)	485, 655
BmgT120I	GGNCC	6 cut(s)	76, 473, 481, 890, 891, 953
BmiI	GGNNCC	6 cut(s)	174, 483, 705, 891, 892, 955
BmrFI	CCNGG	4 cut(s)	467, 605, 795, 895
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	2 cut(s)	254, 546
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	568
Bsa29I	ATCGAT	1 cut(s)	531
BsaJI	CCNNGG	5 cut(s)	33, 576, 582, 682, 893
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 794, 961
Bse1I	ACTGG	2 cut(s)	776, 879
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	4 cut(s)	467, 605, 795, 895
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	5 cut(s)	33, 576, 582, 682, 893
BseGI	GGATG	2 cut(s)	121, 245
BseLI	CCNNNNNNNGG	3 cut(s)	255, 794, 961
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	102, 604, 915
BseNI	ACTGG	2 cut(s)	776, 879
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	2 cut(s)	352, 892
BsgI	GTGCAG	1 cut(s)	539
BshFI	GGCC	5 cut(s)	78, 581, 747, 892, 954
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	802
BsiHKCI	CYCGRG	2 cut(s)	485, 655
BsiSI	CCGG	3 cut(s)	66, 211, 671
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	255, 794, 961
BsmAI	GTCTC	3 cut(s)	438, 482, 620
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	5 cut(s)	78, 581, 747, 892, 954
BsoBI	CYCGRG	2 cut(s)	485, 655
Bsp120I	GGGCCC	1 cut(s)	890
Bsp1286I	GDGCHC	3 cut(s)	591, 802, 894
Bsp143I	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	5 cut(s)	78, 581, 747, 892, 954
BspCNI	CTCAG	3 cut(s)	101, 603, 914
BspDI	ATCGAT	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	6 cut(s)	174, 483, 705, 891, 892, 955
BspPI	GGATC	4 cut(s)	101, 698, 711, 905
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	776, 879
BssECI	CCNNGG	5 cut(s)	33, 576, 582, 682, 893
BssMI	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	3 cut(s)	33, 582, 682
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	467, 605, 795, 895
Bst4CI	ACNGT	2 cut(s)	473, 721
Bst6I	CTCTTC	1 cut(s)	877
BstC8I	GCNNGC	2 cut(s)	216, 749
BstDEI	CTNAG	3 cut(s)	88, 590, 901
BstF5I	GGATG	2 cut(s)	121, 245
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	8 cut(s)	96, 202, 415, 535, 706, 823, 900, 1034
BstMAI	GTCTC	3 cut(s)	438, 482, 620
BstMBI	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	4 cut(s)	467, 605, 795, 895
BstNSI	RCATGY	1 cut(s)	912
BstSCI	CCNGG	4 cut(s)	465, 603, 793, 893
BstSLI	GKGCMC	1 cut(s)	894
BstV1I	GCAGC	2 cut(s)	352, 892
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	3 cut(s)	412, 703, 897
BstYI	RGATCY	3 cut(s)	412, 703, 897
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	5 cut(s)	78, 581, 747, 892, 954
BsuTUI	ATCGAT	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	121, 245
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	3 cut(s)	522, 594, 769
Cac8I	GCNNGC	2 cut(s)	216, 749
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	6 cut(s)	76, 473, 481, 890, 891, 953
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	3 cut(s)	526, 722, 872
CviAII	CATG	4 cut(s)	281, 335, 622, 909
CviQI	GTAC	3 cut(s)	526, 722, 872
DdeI	CTNAG	3 cut(s)	88, 590, 901
DpnI	GATC	8 cut(s)	95, 201, 414, 534, 705, 822, 899, 1033
DpnII	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
DraI	TTTAAA	1 cut(s)	1072
Eam1104I	CTCTTC	1 cut(s)	877
EarI	CTCTTC	1 cut(s)	877
Ecl136II	GAGCTC	1 cut(s)	800
Eco130I	CCWWGG	3 cut(s)	33, 582, 682
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	3 cut(s)	591, 802, 894
Eco47I	GGWCC	2 cut(s)	473, 481
Eco53kI	GAGCTC	1 cut(s)	800
Eco88I	CYCGRG	2 cut(s)	485, 655
EcoICRI	GAGCTC	1 cut(s)	800
EcoO109I	RGGNCCY	2 cut(s)	76, 890
EcoRII	CCWGG	4 cut(s)	465, 603, 793, 893
EcoT14I	CCWWGG	3 cut(s)	33, 582, 682
EcoT38I	GRGCYC	3 cut(s)	591, 802, 894
ErhI	CCWWGG	3 cut(s)	33, 582, 682
FaeI	CATG	4 cut(s)	284, 338, 625, 912
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	280, 334, 621, 908
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	341, 745, 906
FokI	GGATG	2 cut(s)	108, 232
FriOI	GRGCYC	3 cut(s)	591, 802, 894
Fsp4HI	GCNGC	3 cut(s)	341, 745, 906
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	341, 745, 906
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	5 cut(s)	78, 581, 747, 892, 954
HapII	CCGG	3 cut(s)	66, 211, 671
HgaI	GACGC	1 cut(s)	847
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	284, 338, 625, 912
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	5 cut(s)	11, 86, 322, 377, 939
HpaII	CCGG	3 cut(s)	66, 211, 671
HphI	GGTGA	2 cut(s)	829, 830
Hpy166II	GTNNAC	2 cut(s)	85, 163
Hpy188I	TCNGA	6 cut(s)	148, 250, 577, 703, 854, 976
Hpy188III	TCNNGA	5 cut(s)	203, 290, 335, 374, 665
Hpy8I	GTNNAC	2 cut(s)	85, 163
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	5 cut(s)	223, 311, 340, 508, 717
HpyCH4III	ACNGT	2 cut(s)	473, 721
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	8 cut(s)	405, 507, 520, 621, 730, 751, 829, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	3 cut(s)	88, 590, 901
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	284, 338, 625, 912
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
LmnI	GCTCC	2 cut(s)	673, 797
Lsp1109I	GCAGC	2 cut(s)	352, 892
LweI	GCATC	2 cut(s)	254, 546
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	374, 767
MalI	GATC	8 cut(s)	95, 201, 414, 534, 705, 822, 899, 1033
MboI	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
MboII	GAAGA	3 cut(s)	17, 367, 894
MflI	RGATCY	3 cut(s)	412, 703, 897
MhlI	GDGCHC	3 cut(s)	591, 802, 894
MluCI	AATT	4 cut(s)	142, 436, 1051, 1073
MlyI	GAGTC	2 cut(s)	80, 371
MmeI	TCCRAC	2 cut(s)	294, 812
MnlI	CCTC	9 cut(s)	25, 125, 320, 505, 543, 571, 721, 767, 795
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	5 cut(s)	72, 276, 539, 716, 1071
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	3 cut(s)	66, 211, 671
MspR9I	CCNGG	4 cut(s)	467, 605, 795, 895
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	4 cut(s)	467, 605, 795, 895
MwoI	GCNNNNNNNGC	1 cut(s)	806
NdeII	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
NlaIII	CATG	4 cut(s)	284, 338, 625, 912
NlaIV	GGNNCC	6 cut(s)	174, 483, 705, 891, 892, 955
NmeAIII	GCCGAG	1 cut(s)	720
NmuCI	GTSAC	2 cut(s)	374, 767
NspI	RCATGY	1 cut(s)	912
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	11, 322, 939
PflMI	CCANNNNNTGG	1 cut(s)	794
PfoI	TCCNGGA	2 cut(s)	465, 793
PkrI	GCNGC	3 cut(s)	342, 746, 907
PleI	GAGTC	2 cut(s)	80, 371
PpsI	GAGTC	2 cut(s)	80, 371
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	4 cut(s)	465, 603, 793, 893
PspGI	CCWGG	4 cut(s)	465, 603, 793, 893
PspN4I	GGNNCC	6 cut(s)	174, 483, 705, 891, 892, 955
PspOMI	GGGCCC	1 cut(s)	890
PspPI	GGNCC	6 cut(s)	76, 473, 481, 890, 891, 953
PsuI	RGATCY	3 cut(s)	412, 703, 897
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	3 cut(s)	527, 723, 873
RsaNI	GTAC	3 cut(s)	526, 722, 872
SacI	GAGCTC	1 cut(s)	802
SaqAI	TTAA	5 cut(s)	72, 276, 539, 716, 1071
SatI	GCNGC	3 cut(s)	341, 745, 906
Sau3AI	GATC	8 cut(s)	93, 199, 412, 532, 703, 820, 897, 1031
Sau96I	GGNCC	6 cut(s)	76, 473, 481, 890, 891, 953
ScaI	AGTACT	1 cut(s)	873
SchI	GAGTC	2 cut(s)	80, 371
ScrFI	CCNGG	4 cut(s)	467, 605, 795, 895
SduI	GDGCHC	3 cut(s)	591, 802, 894
SfaNI	GCATC	2 cut(s)	254, 546
SinI	GGWCC	2 cut(s)	473, 481
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	4 cut(s)	142, 436, 1051, 1073
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	802
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	465, 603, 793, 893
StyI	CCWWGG	3 cut(s)	33, 582, 682
TaaI	ACNGT	2 cut(s)	473, 721
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	5 cut(s)	325, 380, 425, 531, 861
TasI	AATT	4 cut(s)	142, 436, 1051, 1073
TatI	WGTACW	3 cut(s)	525, 721, 871
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	3 cut(s)	11, 322, 939
Tru1I	TTAA	5 cut(s)	72, 276, 539, 716, 1071
Tru9I	TTAA	5 cut(s)	72, 276, 539, 716, 1071
TscAI	CASTG	3 cut(s)	522, 601, 776
TseFI	GTSAC	2 cut(s)	374, 767
TseI	GCWGC	2 cut(s)	340, 905
Tsp45I	GTSAC	2 cut(s)	374, 767
TspDTI	ATGAA	3 cut(s)	69, 110, 323
TspRI	CASTG	3 cut(s)	522, 601, 776
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	473, 481
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	879
ZrmI	AGTACT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.