Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008840

Physical Location & Seq

Genomic Coordinates Reverse (-)

20292625 .. 20294555

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGATGGGTCACAGCCAAAATATGACAGAGTCAAGGAAGTGAAGGAGTTTGATGAAACAAGAGCTGGAGTTAAAGGCCTTGTAGACTCAGGGGTAACAAAAGTCCCAAGTTTCCTCATCCATCCACCACAGAGCCTTTTAAGTTCAACCACAGCCAATATACAATTCCAAGTTCCAGTCATAGATTTTGATGGCTTTGATCATGATTTCCAGCGTGTGCAGATTGTCAAGGAAATTCGAGAAGCGTCCGAAACATGGGGTTTCTTTCAAATGATCAATCATGGAGTTCCAGACAGGGTAATAGGCAATATGATAGAAGCAATTCGACAGTTTCATGAGCAGCCAGAGGAGGTGAAGATGGAGTTGTATTCCCGAGACTCTAAGCAAAGAGTTAGATTTTACTGCAATGGAGATCTGTTGGTATCAAAAGCAGCAAACTGGAGAGATTCAATAGGCTTTGATTTCCAGGACGGACCATTGGACCCCGAGTCATTTCCCTCTGTTTGCAGAGAGCCGGTGCAAGAGTACATGAAACACTTGATCAACCTAAGAGAGGTGATATCAGGTTTGTTGTCAGAGGCCTTGGGGCTTAGCACTGATCACCTAGAACGCATAGAGTGCATGAAGACTGAAAATCTGGTGTGCCATTATTACCCAAGCTGTCCAGAACCAGAGCTGACCCTTGGGGCAACCAAACATTCAGATCCATCCTCTTTGACTGTGCTCTTACAAGACAATCTTGGTGGCCTACAAGTCCTCCATCAAGGTCACTGGGTTGATGTTCCTCCAGCTCATGGAGCTCTGGTGGCCAATATTGGTGATCTAATGCAGCTTATTACTAATGACAAGTTCAAAAGTGTGGAGCACAGGGTACTGGCTGGAAGAGTGGGGCCGAGGATATCAGCTGCATGTTTTTTCTATCCAAGTGCCACACATAGATTTAAACCCTATGGGCCAATTAAGGAGTTTGTGTCTAACAACCTACCTATATACAGGGAAACTCATGTTGGAGAATATCTTGCCTATTACAGGTCAAAAGGATTAGATGGTAACTCTGCCCTTCCTCATTTTAAATTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

362

Amino Acids

40.79

Weight (kDa)

5.76

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830
malus_domestica	MD10G1186400.v1.1
prunus_persica	Prupe.8G226000_v2.0.a1
pyrus_communis	pycom10g16130
rosa_chinensis	RchiOBHm_Chr3g0455441 RchiOBHm_Chr6g0288551
rosa_laevigata	RLG00000012389 RLG00000025362
rosa_multiflora	Rmu_sc0002058.1_g000015 Rmu_sc0003728.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424280 Rroxscaffold_7G00179990
rosa_rugosa	Rorug03G0007600 Rorug06G0197000
rosa_samantha	Rh3AG067000 Rh3BG069300 Rh3CG067800 Rh3DG069300 Rh6BG314300 Rh6CG321600 Rh6DG307400
rosa_wichuraiana	Rw3G005290 Rw6G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	2 cut(s)	530, 876
AfiI	CCNNNNNNNGG	4 cut(s)	258, 556, 797, 1032
AgsI	TTSAA	4 cut(s)	150, 272, 453, 856
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 993, 1025
AluBI	AGCT	7 cut(s)	68, 663, 679, 794, 803, 835, 908
AluI	AGCT	7 cut(s)	68, 663, 679, 794, 803, 835, 908
Alw21I	GWGCWC	3 cut(s)	729, 805, 870
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	2 cut(s)	375, 488
AoxI	GGCC	6 cut(s)	79, 582, 748, 810, 893, 956
ApeKI	GCWGC	4 cut(s)	343, 434, 832, 908
ApoI	RAATTY	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	4 cut(s)	476, 484, 893, 956
AsuHPI	GGTGA	4 cut(s)	367, 571, 596, 833
AvaI	CYCGRG	2 cut(s)	375, 488
AvaII	GGWCC	2 cut(s)	476, 484
BalI	TGGCCA	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	3 cut(s)	729, 805, 870
BbvI	GCAGC	4 cut(s)	355, 446, 844, 895
BccI	CCATC	7 cut(s)	2, 132, 188, 355, 718, 771, 1043
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	4 cut(s)	202, 276, 543, 601
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	4 cut(s)	344, 435, 833, 909
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	4 cut(s)	345, 436, 834, 910
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	476, 484
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	2 cut(s)	375, 488
BmgT120I	GGNCC	4 cut(s)	476, 484, 893, 956
BmiI	GGNNCC	2 cut(s)	486, 894
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	3 cut(s)	90, 463, 774
Bpu1102I	GCTNAGC	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	585, 685, 896
BsaXI	ACNNNNNCTCC	6 cut(s)	744, 774, 792, 822, 959, 989
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 556, 797, 1032
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	4 cut(s)	179, 446, 779, 882
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	3 cut(s)	585, 685, 896
BseGI	GGATG	3 cut(s)	120, 124, 710
BseLI	CCNNNNNNNGG	4 cut(s)	258, 556, 797, 1032
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	4 cut(s)	179, 446, 779, 882
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	355, 446, 844, 895
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	6 cut(s)	81, 584, 750, 812, 895, 958
BsiHKAI	GWGCWC	3 cut(s)	729, 805, 870
BsiHKCI	CYCGRG	2 cut(s)	375, 488
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	4 cut(s)	258, 556, 797, 1032
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	6 cut(s)	81, 584, 750, 812, 895, 958
BsoBI	CYCGRG	2 cut(s)	375, 488
Bsp1286I	GDGCHC	3 cut(s)	729, 805, 870
Bsp143I	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
Bsp1720I	GCTNAGC	1 cut(s)	593
BspANI	GGCC	6 cut(s)	81, 584, 750, 812, 895, 958
BspCNI	CTCAG	1 cut(s)	104
BspHI	TCATGA	2 cut(s)	205, 337
BspLI	GGNNCC	2 cut(s)	486, 894
BspPI	GGATC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	179, 446, 779, 882
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	585, 685, 896
BssMI	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
BssT1I	CCWWGG	2 cut(s)	585, 685
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	333, 724
Bst6I	CTCTTC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstDEI	CTNAG	4 cut(s)	91, 384, 551, 593
BstENI	CCTNNNNNAGG	2 cut(s)	554, 1030
BstF5I	GGATG	3 cut(s)	120, 124, 710
BstKTI	GATC	7 cut(s)	205, 279, 418, 546, 604, 709, 826
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	621, 800, 809
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	915
BstSCI	CCNGG	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	355, 446, 844, 895
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	2 cut(s)	415, 706
BstYI	RGATCY	2 cut(s)	415, 706
BsuRI	GGCC	6 cut(s)	81, 584, 750, 812, 895, 958
BtsCI	GGATG	3 cut(s)	120, 124, 710
BtsIMutI	CAGTG	2 cut(s)	597, 772
CciI	TCATGA	2 cut(s)	205, 337
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	4 cut(s)	476, 484, 893, 956
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	529, 875
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	9 cut(s)	206, 258, 284, 338, 532, 625, 797, 912, 1007
CviQI	GTAC	2 cut(s)	529, 875
DdeI	CTNAG	4 cut(s)	91, 384, 551, 593
DpnI	GATC	7 cut(s)	204, 278, 417, 545, 603, 708, 825
DpnII	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
DraI	TTTAAA	2 cut(s)	946, 1075
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	880
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	880
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	2 cut(s)	585, 685
Eco147I	AGGCCT	2 cut(s)	81, 584
Eco24I	GRGCYC	1 cut(s)	805
Eco32I	GATATC	2 cut(s)	564, 903
Eco47I	GGWCC	2 cut(s)	476, 484
Eco53kI	GAGCTC	1 cut(s)	803
Eco88I	CYCGRG	2 cut(s)	375, 488
EcoICRI	GAGCTC	1 cut(s)	803
EcoNI	CCTNNNNNAGG	2 cut(s)	554, 1030
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	2 cut(s)	564, 903
EcoT14I	CCWWGG	2 cut(s)	585, 685
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	2 cut(s)	585, 685
FaeI	CATG	9 cut(s)	209, 261, 287, 341, 535, 628, 800, 915, 1010
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	9 cut(s)	205, 257, 283, 337, 531, 624, 796, 911, 1006
FbaI	TGATCA	4 cut(s)	202, 276, 543, 601
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	344, 435, 833, 909
FokI	GGATG	3 cut(s)	107, 111, 697
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	4 cut(s)	344, 435, 833, 909
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	4 cut(s)	344, 435, 833, 909
GsuI	CTGGAG	3 cut(s)	90, 463, 774
HaeIII	GGCC	6 cut(s)	81, 584, 750, 812, 895, 958
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	9 cut(s)	209, 261, 287, 341, 535, 628, 800, 915, 1010
HinfI	GANTC	5 cut(s)	33, 89, 380, 449, 491
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	4 cut(s)	367, 571, 596, 833
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	253, 580, 706
Hpy188III	TCNNGA	6 cut(s)	206, 242, 293, 338, 375, 668
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	40, 1073
HpyCH4III	ACNGT	2 cut(s)	333, 724
HpyCH4V	TGCA	7 cut(s)	223, 408, 510, 523, 624, 832, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	621, 800, 809
HpyF3I	CTNAG	4 cut(s)	91, 384, 551, 593
Hsp92II	CATG	9 cut(s)	209, 261, 287, 341, 535, 628, 800, 915, 1010
Ksp22I	TGATCA	4 cut(s)	202, 276, 543, 601
Kzo9I	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
LmnI	GCTCC	2 cut(s)	800, 865
Lsp1109I	GCAGC	4 cut(s)	355, 446, 844, 895
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	4 cut(s)	12, 97, 770, 1052
MalI	GATC	7 cut(s)	204, 278, 417, 545, 603, 708, 825
MboI	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
MboII	GAAGA	4 cut(s)	17, 370, 640, 897
MflI	RGATCY	2 cut(s)	415, 706
MhlI	GDGCHC	3 cut(s)	729, 805, 870
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	5 cut(s)	167, 237, 324, 960, 1076
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	4 cut(s)	42, 83, 374, 500
MmeI	TCCRAC	1 cut(s)	991
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	5 cut(s)	75, 143, 945, 963, 1074
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	621, 800, 809
NdeII	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
NlaIII	CATG	9 cut(s)	209, 261, 287, 341, 535, 628, 800, 915, 1010
NlaIV	GGNNCC	2 cut(s)	486, 894
NmeAIII	GCCGAG	1 cut(s)	921
NmuCI	GTSAC	2 cut(s)	12, 770
NspI	RCATGY	1 cut(s)	915
PagI	TCATGA	2 cut(s)	205, 337
PceI	AGGCCT	2 cut(s)	81, 584
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	345, 436, 834, 910
PleI	GAGTC	4 cut(s)	41, 83, 374, 499
PpsI	GAGTC	4 cut(s)	41, 83, 374, 499
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	486, 894
PspPI	GGNCC	4 cut(s)	476, 484, 893, 956
PsuI	RGATCY	2 cut(s)	415, 706
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	2 cut(s)	530, 876
RsaNI	GTAC	2 cut(s)	529, 875
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	5 cut(s)	75, 143, 945, 963, 1074
SatI	GCNGC	4 cut(s)	344, 435, 833, 909
Sau3AI	GATC	7 cut(s)	202, 276, 415, 543, 601, 706, 823
Sau96I	GGNCC	4 cut(s)	476, 484, 893, 956
SchI	GAGTC	4 cut(s)	42, 83, 374, 500
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	729, 805, 870
SinI	GGWCC	2 cut(s)	476, 484
Sse9I	AATT	5 cut(s)	167, 237, 324, 960, 1076
SseBI	AGGCCT	2 cut(s)	81, 584
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	805
StuI	AGGCCT	2 cut(s)	81, 584
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	2 cut(s)	585, 685
TaaI	ACNGT	2 cut(s)	333, 724
TaqI	TCGA	2 cut(s)	241, 328
TasI	AATT	5 cut(s)	167, 237, 324, 960, 1076
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	5 cut(s)	75, 143, 945, 963, 1074
Tru9I	TTAA	5 cut(s)	75, 143, 945, 963, 1074
TscAI	CASTG	2 cut(s)	604, 779
TseFI	GTSAC	2 cut(s)	12, 770
TseI	GCWGC	4 cut(s)	343, 434, 832, 908
Tsp45I	GTSAC	2 cut(s)	12, 770
TspDTI	ATGAA	4 cut(s)	72, 326, 548, 641
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	2 cut(s)	604, 779
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	2 cut(s)	476, 484
XagI	CCTNNNNNAGG	2 cut(s)	554, 1030
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.