Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008840

Physical Location & Seq

Genomic Coordinates Forward (+)

4430238 .. 4431554

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGATGTGTCAGGAAGTTATGACAGAGCCAAAGAAGTAAAGGAGTTTGATGAAACAAAAGCCGGAGTGAAAGGGCTAATAGACTCAGGGGGGACCAAAGTGCCAAAGTTCCTCGTTCATCCACCAGAGAAGCTTTCAAGTTCAACCCCAACCATTACAGACTTCCAAGTTCCACTTATAGATCTTGACGGGCTCGATGAGGATCTCCGGCGGGTGCAGATTGTGGAGGAAATCCACAAAGCATCGGAAACATGGGGGTTCTTTCAAATGGTTAATCATGGAGTTCCAAACAGGGTTATGGACAATTTGTTACAAGCAATAAGAGAATTTCATGAGCAGCCAAAGGAGATGAAAATGAAGTGGTACTCACGCGACTCTAAGCAAAGGGTAAGATACTACTGCAATGGAGATCTGTTGGTGGCAAAAACAGCAAACTGGAGGGATTCAATTGCTTTCGATTTCCAGGATGGTCCTTTGGACCCTGACGCACTTCCCTCGGTTTGCAGACAGGCAGTGCAAGAATACACACAACACGTGATCAACCTAAGAGACGTGCTATCAAGTTTGTTGTCAGAGGCCTTGGGGATCAGCAGTGACTACCTAGCTGGCATAGAGTGCATGAAGAGCGAAACTCTGGTGTGCCATTATTACCCGGTATGTCCAGAACCAGACCTCACCATTGGCACAACCAATCATTCAGATCCTTCCTCCTTAACTATACTCTTACAAGACAACATCGGCGGCCTCCAAGTCCTCCACCAAGGTCACTGGGTCGACCTTCCCCCGAGGCACGGAGCCCTGGTGGCTAATATTGGTGATCTTTTGCAGCTTATCACCAATGACAAGTTCAAAAGCGTGGAGCATAGGGTTCTGGCAGGAAGGATTGGCCCCAGGATATCAGCTGCATGCTTTCTCTATCCAAGTGCTACACATAGATTTAAACCTTATGGGCCAATTAAGGAGTTTCTGTCGTCTGACGACTTACCTATATATAGGGAAACTCATCTGGGAGAATATCTTGCCTATTACAAATCAAAGGGTTTAGATGGTAACTCTGCCCTTGGTCATTTTAAACTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.56

Weight (kDa)

5.69

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 158	7.3e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 306	1.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830
malus_domestica	MD10G1186400.v1.1
prunus_persica	Prupe.8G226000_v2.0.a1
pyrus_communis	pycom10g16130
rosa_chinensis	RchiOBHm_Chr3g0455441 RchiOBHm_Chr6g0288551
rosa_laevigata	RLG00000012389 RLG00000025362
rosa_multiflora	Rmu_sc0002058.1_g000015 Rmu_sc0003728.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424280 Rroxscaffold_7G00179990
rosa_rugosa	Rorug03G0007600 Rorug06G0197000
rosa_samantha	Rh3AG067000 Rh3BG069300 Rh3CG067800 Rh3DG069300 Rh6BG314300 Rh6CG321600 Rh6DG307400
rosa_wichuraiana	Rw3G005290 Rw6G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	1 cut(s)	375
AciI	CCGC	2 cut(s)	214, 744
AclWI	GGATC	3 cut(s)	213, 596, 698
AcsI	RAATTY	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	538
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	5 cut(s)	141, 147, 269, 450, 853
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	3 cut(s)	465, 801, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AluBI	AGCT	4 cut(s)	136, 608, 832, 905
AluI	AGCT	4 cut(s)	136, 608, 832, 905
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	213, 596, 698
Ama87I	CYCGRG	1 cut(s)	787
AoxI	GGCC	4 cut(s)	579, 745, 889, 953
ApeKI	GCWGC	3 cut(s)	340, 829, 905
ApoI	RAATTY	1 cut(s)	329
AspS9I	GGNCC	5 cut(s)	96, 473, 481, 890, 953
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	3 cut(s)	670, 829, 830
AvaI	CYCGRG	1 cut(s)	787
AvaII	GGWCC	3 cut(s)	96, 473, 481
BanII	GRGCYC	2 cut(s)	198, 802
BbrPI	CACGTG	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	352, 841, 892
BccI	CCATC	2 cut(s)	464, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	3 cut(s)	467, 803, 895
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	605
BglI	GCCNNNNNGGC	1 cut(s)	806
BglII	AGATCT	2 cut(s)	184, 412
BisI	GCNGC	4 cut(s)	341, 745, 830, 906
BlsI	GCNGC	4 cut(s)	342, 746, 831, 907
Bme1390I	CCNGG	4 cut(s)	467, 656, 803, 895
Bme18I	GGWCC	3 cut(s)	96, 473, 481
BmeT110I	CYCGRG	1 cut(s)	787
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	5 cut(s)	96, 473, 481, 890, 953
BmiI	GGNNCC	4 cut(s)	97, 483, 799, 892
BmrFI	CCNGG	4 cut(s)	467, 656, 803, 895
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	781
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	7 cut(s)	498, 582, 763, 788, 801, 893, 1063
BsaXI	ACNNNNNCTCC	4 cut(s)	789, 819, 956, 986
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	443, 776
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	467, 803, 895
BseDI	CCNNGG	7 cut(s)	498, 582, 763, 788, 801, 893, 1063
BseGI	GGATG	2 cut(s)	121, 475
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	443, 776
BseXI	GCAGC	3 cut(s)	352, 841, 892
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	581, 747, 891, 955
BsiHKCI	CYCGRG	1 cut(s)	787
BsiSI	CCGG	3 cut(s)	66, 211, 656
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	1 cut(s)	546
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	581, 747, 891, 955
BsoBI	CYCGRG	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	198, 802
Bsp143I	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
BspACI	CCGC	2 cut(s)	214, 744
BspANI	GGCC	4 cut(s)	581, 747, 891, 955
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	97, 483, 799, 892
BspPI	GGATC	3 cut(s)	213, 596, 698
BspQI	GCTCTTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	443, 776
BssECI	CCNNGG	7 cut(s)	498, 582, 763, 788, 801, 893, 1063
BssMI	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
BssT1I	CCWWGG	3 cut(s)	582, 763, 1063
Bst2UI	CCWGG	3 cut(s)	467, 803, 895
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	610, 910
BstDEI	CTNAG	3 cut(s)	88, 381, 548
BstF5I	GGATG	2 cut(s)	121, 475
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 618, 627, 806
BstNI	CCWGG	3 cut(s)	467, 803, 895
BstNSI	RCATGY	1 cut(s)	912
BstSCI	CCNGG	4 cut(s)	465, 654, 801, 893
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	352, 841, 892
BstX2I	RGATCY	4 cut(s)	184, 205, 412, 703
BstYI	RGATCY	4 cut(s)	184, 205, 412, 703
BsuRI	GGCC	4 cut(s)	581, 747, 891, 955
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	121, 475
BtsI	GCAGTG	2 cut(s)	522, 601
BtsIMutI	CAGTG	3 cut(s)	522, 601, 769
Cac8I	GCNNGC	2 cut(s)	610, 910
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	5 cut(s)	96, 473, 481, 890, 953
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	5 cut(s)	255, 281, 335, 622, 909
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	88, 381, 548
DpnI	GATC	7 cut(s)	186, 207, 414, 542, 590, 705, 822
DpnII	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
DraI	TTTAAA	2 cut(s)	943, 1075
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco130I	CCWWGG	3 cut(s)	582, 763, 1063
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	2 cut(s)	198, 802
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	3 cut(s)	96, 473, 481
Eco72I	CACGTG	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	465, 801, 893
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	3 cut(s)	582, 763, 1063
EcoT38I	GRGCYC	2 cut(s)	198, 802
ErhI	CCWWGG	3 cut(s)	582, 763, 1063
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	5 cut(s)	258, 284, 338, 625, 912
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	5 cut(s)	254, 280, 334, 621, 908
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	4 cut(s)	341, 745, 830, 906
FokI	GGATG	2 cut(s)	108, 482
FriOI	GRGCYC	2 cut(s)	198, 802
Fsp4HI	GCNGC	4 cut(s)	341, 745, 830, 906
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	341, 745, 830, 906
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	4 cut(s)	581, 747, 891, 955
HapII	CCGG	3 cut(s)	66, 211, 656
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	5 cut(s)	258, 284, 338, 625, 912
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	3 cut(s)	86, 377, 446
HpaII	CCGG	3 cut(s)	66, 211, 656
HphI	GGTGA	3 cut(s)	670, 829, 830
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	4 cut(s)	250, 577, 703, 979
Hpy188III	TCNNGA	4 cut(s)	15, 188, 335, 665
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	3 cut(s)	717, 791, 876
HpyCH4IV	ACGT	2 cut(s)	537, 555
HpyCH4V	TGCA	7 cut(s)	220, 405, 507, 520, 621, 829, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 618, 627, 806
HpyF3I	CTNAG	3 cut(s)	88, 381, 548
HpySE526I	ACGT	2 cut(s)	537, 555
Hsp92II	CATG	5 cut(s)	258, 284, 338, 625, 912
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	2 cut(s)	797, 862
Lsp1109I	GCAGC	3 cut(s)	352, 841, 892
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	2 cut(s)	537, 555
MaeIII	GTNAC	4 cut(s)	312, 596, 767, 1052
MalI	GATC	7 cut(s)	186, 207, 414, 542, 590, 705, 822
MboI	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
MboII	GAAGA	2 cut(s)	17, 637
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	4 cut(s)	184, 205, 412, 703
MhlI	GDGCHC	2 cut(s)	198, 802
MluCI	AATT	4 cut(s)	307, 329, 450, 957
MlyI	GAGTC	2 cut(s)	80, 371
MseI	TTAA	5 cut(s)	276, 716, 942, 960, 1074
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	3 cut(s)	66, 211, 656
MspR9I	CCNGG	4 cut(s)	467, 656, 803, 895
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	467, 803, 895
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	431, 618, 627, 806
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
NlaIII	CATG	5 cut(s)	258, 284, 338, 625, 912
NlaIV	GGNNCC	4 cut(s)	97, 483, 799, 892
NmuCI	GTSAC	2 cut(s)	596, 767
NspI	RCATGY	1 cut(s)	912
PaeI	GCATGC	1 cut(s)	912
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	342, 746, 831, 907
PleI	GAGTC	2 cut(s)	80, 371
PmaCI	CACGTG	1 cut(s)	538
PmlI	CACGTG	1 cut(s)	538
PpsI	GAGTC	2 cut(s)	80, 371
Ppu21I	YACGTR	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	465, 801, 893
PspCI	CACGTG	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	465, 801, 893
PspN4I	GGNNCC	4 cut(s)	97, 483, 799, 892
PspPI	GGNCC	5 cut(s)	96, 473, 481, 890, 953
PsuI	RGATCY	4 cut(s)	184, 205, 412, 703
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SalI	GTCGAC	1 cut(s)	776
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	5 cut(s)	276, 716, 942, 960, 1074
SatI	GCNGC	4 cut(s)	341, 745, 830, 906
Sau3AI	GATC	7 cut(s)	184, 205, 412, 540, 588, 703, 820
Sau96I	GGNCC	5 cut(s)	96, 473, 481, 890, 953
SchI	GAGTC	2 cut(s)	80, 371
ScrFI	CCNGG	4 cut(s)	467, 656, 803, 895
SduI	GDGCHC	2 cut(s)	198, 802
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	3 cut(s)	96, 473, 481
SphI	GCATGC	1 cut(s)	912
Sse9I	AATT	4 cut(s)	307, 329, 450, 957
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	2 cut(s)	214, 744
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	1 cut(s)	605
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	465, 654, 801, 893
StyI	CCWWGG	3 cut(s)	582, 763, 1063
TaiI	ACGT	2 cut(s)	540, 558
TaqI	TCGA	3 cut(s)	198, 459, 777
TasI	AATT	4 cut(s)	307, 329, 450, 957
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	5 cut(s)	276, 716, 942, 960, 1074
Tru9I	TTAA	5 cut(s)	276, 716, 942, 960, 1074
TscAI	CASTG	3 cut(s)	522, 601, 776
TseFI	GTSAC	2 cut(s)	596, 767
TseI	GCWGC	3 cut(s)	340, 829, 905
Tsp45I	GTSAC	2 cut(s)	596, 767
TspDTI	ATGAA	6 cut(s)	69, 110, 323, 368, 374, 638
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	3 cut(s)	522, 601, 776
VpaK11BI	GGWCC	3 cut(s)	96, 473, 481
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.