Rorug06G0197000

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008840
Physical Location & Seq
Forward (+)
31720035 .. 31727959
7925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0197000.1

Sequence Viewer

Length: 1299 bp
ATGGCAAAGCGCGTCTACCAAGTCTGGAAAGGAAGTAATAAGTTCATCCTTGGCGGAAGGTTGATATTTGGGCCAGATGCCAGGTCACTGCTTGTCACATTGCTGTTGATCATTGCTCCAGTTATCATCTTTTGCGTATTTGTCGCGTGGCATCTTCGGCATGAATTTCCATCGTATAATGCAGGATACGCCATTTTGGTGGTAGCGATTGTATTTACTATATACGTGTTGGTGCTTCTTTTTCTTACTTCAGCCCGGGACCCTGGGATTATTCCACGAAATTCACATCCACCCGAGGAAGATTTCCGGTATGACTCTTCAGTGTCTATTGATGTTGCTGGAAGACCAGGGGGTGGTAATGTCGGTGGAAGACAAACTCCAAGCCTTCAATTCCCTAGAACTAAAGAAGTGATGGTCAATGGGCATCCTGTAAGAGTGAAGTATTGTGACACTTGTATGCTATATCGGCCTCCTCGTTGTTCCCATTGTTCTATCTGCAACAATTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTGGGGCAATGCATTGGCCAGTGCAACTATCGTTACTTCTTTATGTTCGTCTCTTCCGCAACTCTTCTCTGCACGTACGTGTTCTCAATATCCGCTCTATACATCAAGATTTTGATGGATGATCATAATGGGACAGTTTGGAAGGCAATGAAAGAATCTCCTGTGTCAGTGATACTAATGGCCTATTGTTTCATTTCTCTTTGGTTTGTTGGTGGACTAACTGGCTTCCATCTGTACCTTATAGGTACCAATCAGACTACATATGAGAACTTCAGGTACAGAGCGGACAACAGGATCAATGTTTACAACCGTGGTTGTGTAAATAACTTTCTTGAAGTTTTTTGCACAGAAGTAAAACCCTCACGAAATAACTTTCGGGCTTTCGTTGAAGAGGAGGTGCAAAGGCCTCCCCCTTTGCCTACCGCACGGGAAGCGGAACCAGATGATTCGGGTGGGGATCCACGTTCAAAGGTAGAGGATGATTTGGATATTGGTGAAGATCTGTTGAAGATCTCACAGCGTCGTAATATTGAAGAGATTGACGAGGACATACGCAGTAGAGGGAGCAACGGACCGCATAATGCTTCGGAGGCAGACTCTGTTCTGGGTTCAGATCACCGCGCTCCCACCATTCGAGCTGATGCTCGACACTCGAGTTGGGGAAGGAGGAGTGGGAGCTGGGAAATTGCACCAGACGTCCTTCCTAATGAAAATGTCACTGAAAGTAGAAGTCATGTCAATCCAAACGATGCATGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

432

Amino Acids

48.79

Weight (kDa)

6.67

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 147 - 271 2.6e-38 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1236
Acc65I GGTACC 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 353
AccBSI CCGCTC 2 cut(s) 632, 821
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 12, 146, 1158
AciI CCGC 8 cut(s) 54, 594, 630, 821, 960, 971, 1112, 1156
AclWI GGATC 3 cut(s) 839, 989, 1002
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 2 cut(s) 164, 280
AcuI CTGAAG 3 cut(s) 234, 303, 793
AcyI GRCGYC 1 cut(s) 1233
AfaI GTAC 4 cut(s) 614, 773, 784, 815
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 3 cut(s) 353, 538, 539
AflIII ACRYGT 2 cut(s) 225, 615
AgsI TTSAA 6 cut(s) 389, 872, 926, 1005, 1045, 1070
AjnI CCWGG 3 cut(s) 80, 262, 346
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 2 cut(s) 1175, 1215
AluI AGCT 2 cut(s) 1175, 1215
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 3 cut(s) 839, 989, 1002
AlwNI CAGNNNCTG 1 cut(s) 1136
Ama87I CYCGRG 3 cut(s) 255, 293, 1189
Aor51HI AGCGCT 1 cut(s) 515
AoxI GGCC 5 cut(s) 71, 467, 553, 717, 941
ApoI RAATTY 2 cut(s) 164, 280
Asp718I GGTACC 1 cut(s) 782
AspLEI GCGC 3 cut(s) 12, 516, 1160
AspS9I GGNCC 3 cut(s) 71, 259, 1109
AsuC2I CCSGG 2 cut(s) 256, 257
AsuHPI GGTGA 3 cut(s) 515, 1043, 1145
AvaI CYCGRG 3 cut(s) 255, 293, 1189
AvaII GGWCC 2 cut(s) 259, 1109
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 349, 376
BccI CCATC 4 cut(s) 178, 406, 646, 774
BciT130I CCWGG 3 cut(s) 82, 264, 348
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 3 cut(s) 108, 520, 658
BcnI CCSGG 2 cut(s) 256, 257
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 517
BfuI GTATCC 1 cut(s) 179
BglII AGATCT 2 cut(s) 1036, 1047
Bme1390I CCNGG 5 cut(s) 82, 256, 257, 264, 348
Bme18I GGWCC 2 cut(s) 259, 1109
BmeT110I CYCGRG 3 cut(s) 255, 293, 1189
BmgT120I GGNCC 3 cut(s) 71, 259, 1109
BmiI GGNNCC 5 cut(s) 260, 261, 784, 975, 996
BmrFI CCNGG 5 cut(s) 82, 256, 257, 264, 348
BmsI GCATC 5 cut(s) 67, 160, 433, 1168, 1276
BpiI GAAGAC 2 cut(s) 349, 376
BplI GAGNNNNNCTC 2 cut(s) 1118, 1150
BpmI CTGGAG 1 cut(s) 102
BpuMI CCSGG 2 cut(s) 256, 257
BsaAI YACGTR 3 cut(s) 226, 612, 616
BsaHI GRCGYC 1 cut(s) 1233
BsaJI CCNNGG 8 cut(s) 49, 255, 262, 263, 294, 347, 533, 847
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 538, 539
Bse1I ACTGG 3 cut(s) 119, 556, 763
Bse3DI GCAATG 4 cut(s) 98, 111, 551, 690
BseBI CCWGG 3 cut(s) 82, 264, 348
BseDI CCNNGG 8 cut(s) 49, 255, 262, 263, 294, 347, 533, 847
BseGI GGATG 5 cut(s) 45, 286, 424, 661, 1021
BseLI CCNNNNNNNGG 3 cut(s) 353, 538, 539
BseMI GCAATG 4 cut(s) 98, 111, 551, 690
BseNI ACTGG 3 cut(s) 119, 556, 763
BseRI GAGGAG 3 cut(s) 462, 944, 1219
BseYI CCCAGC 1 cut(s) 1215
BsgI GTGCAG 1 cut(s) 592
Bsh1236I CGCG 3 cut(s) 12, 146, 1158
BshFI GGCC 5 cut(s) 73, 469, 555, 719, 943
BshNI GGYRCC 1 cut(s) 782
BsiHKCI CYCGRG 3 cut(s) 255, 293, 1189
BsiSI CCGG 2 cut(s) 256, 307
BsiWI CGTACG 1 cut(s) 612
BslFI GGGAC 2 cut(s) 272, 682
BslI CCNNNNNNNGG 3 cut(s) 353, 538, 539
BsmAI GTCTC 1 cut(s) 592
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 2 cut(s) 272, 682
BsnI GGCC 5 cut(s) 73, 469, 555, 719, 943
BsoBI CYCGRG 3 cut(s) 255, 293, 1189
Bsp143I GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
BspACI CCGC 8 cut(s) 54, 594, 630, 821, 960, 971, 1112, 1156
BspANI GGCC 5 cut(s) 73, 469, 555, 719, 943
BspFNI CGCG 3 cut(s) 12, 146, 1158
BspLI GGNNCC 5 cut(s) 260, 261, 784, 975, 996
BspPI GGATC 3 cut(s) 839, 989, 1002
BspT107I GGYRCC 1 cut(s) 782
BsrBI CCGCTC 2 cut(s) 632, 821
BsrDI GCAATG 4 cut(s) 98, 111, 551, 690
BsrI ACTGG 3 cut(s) 119, 556, 763
BssECI CCNNGG 8 cut(s) 49, 255, 262, 263, 294, 347, 533, 847
BssMI GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
BssNI GRCGYC 1 cut(s) 1233
BssT1I CCWWGG 2 cut(s) 49, 533
Bst2UI CCWGG 3 cut(s) 82, 264, 348
Bst4CI ACNGT 2 cut(s) 673, 848
Bst6I CTCTTC 5 cut(s) 322, 595, 606, 921, 1065
BstACI GRCGYC 1 cut(s) 1233
BstBAI YACGTR 3 cut(s) 226, 612, 616
BstDSI CCRYGG 1 cut(s) 847
BstF5I GGATG 5 cut(s) 45, 286, 424, 661, 1021
BstFNI CGCG 3 cut(s) 12, 146, 1158
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 3 cut(s) 12, 516, 1160
BstKTI GATC 8 cut(s) 111, 523, 661, 834, 997, 1039, 1050, 1153
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
BstMWI GCNNNNNNNGC 5 cut(s) 157, 188, 466, 968, 1127
BstNI CCWGG 3 cut(s) 82, 264, 348
BstNSI RCATGY 1 cut(s) 1293
BstSCI CCNGG 5 cut(s) 80, 254, 255, 262, 346
BstUI CGCG 3 cut(s) 12, 146, 1158
BstV2I GAAGAC 2 cut(s) 349, 376
BstX2I RGATCY 3 cut(s) 994, 1036, 1047
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 3 cut(s) 994, 1036, 1047
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 5 cut(s) 73, 469, 555, 719, 943
BtgI CCRYGG 1 cut(s) 847
BtsCI GGATG 5 cut(s) 45, 286, 424, 661, 1021
BtsI GCAGTG 2 cut(s) 86, 526
BtsIMutI CAGTG 6 cut(s) 86, 327, 526, 563, 711, 1254
CaiI CAGNNNCTG 1 cut(s) 1136
CfoI GCGC 3 cut(s) 12, 516, 1160
Cfr13I GGNCC 3 cut(s) 71, 259, 1109
Cfr9I CCCGGG 1 cut(s) 255
CpoI CGGWCCG 1 cut(s) 1109
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 4 cut(s) 613, 772, 783, 814
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CspI CGGWCCG 1 cut(s) 1109
CviAII CATG 3 cut(s) 161, 1271, 1290
CviQI GTAC 4 cut(s) 613, 772, 783, 814
DpnI GATC 8 cut(s) 110, 522, 660, 833, 996, 1038, 1049, 1152
DpnII GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 5 cut(s) 322, 595, 606, 921, 1065
EarI CTCTTC 5 cut(s) 322, 595, 606, 921, 1065
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 49, 533
Eco147I AGGCCT 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 259, 1109
Eco47III AGCGCT 1 cut(s) 515
Eco57I CTGAAG 3 cut(s) 234, 303, 793
Eco88I CYCGRG 3 cut(s) 255, 293, 1189
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 80, 262, 346
EcoT14I CCWWGG 2 cut(s) 49, 533
EcoT22I ATGCAT 2 cut(s) 551, 1291
ErhI CCWWGG 2 cut(s) 49, 533
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 3 cut(s) 164, 1274, 1293
FaqI GGGAC 2 cut(s) 272, 682
FatI CATG 3 cut(s) 160, 1270, 1289
FauNDI CATATG 1 cut(s) 799
FbaI TGATCA 3 cut(s) 108, 520, 658
FblI GTMKAC 1 cut(s) 15
FokI GGATG 5 cut(s) 32, 273, 411, 668, 1028
FspBI CTAG 1 cut(s) 396
GlaI GCGC 3 cut(s) 11, 515, 1159
GsaI CCCAGC 1 cut(s) 1219
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 5 cut(s) 73, 469, 555, 719, 943
HapII CCGG 2 cut(s) 256, 307
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 3 cut(s) 12, 516, 1160
Hin1I GRCGYC 1 cut(s) 1233
Hin1II CATG 3 cut(s) 164, 1274, 1293
Hin6I GCGC 3 cut(s) 10, 514, 1158
HinP1I GCGC 3 cut(s) 10, 514, 1158
HinfI GANTC 4 cut(s) 314, 692, 983, 1133
HpaII CCGG 2 cut(s) 256, 307
HphI GGTGA 3 cut(s) 515, 1043, 1145
Hpy166II GTNNAC 3 cut(s) 16, 752, 841
Hpy188I TCNGA 3 cut(s) 792, 1126, 1150
Hpy188III TCNNGA 4 cut(s) 25, 643, 869, 900
Hpy8I GTNNAC 3 cut(s) 16, 752, 841
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 5 cut(s) 51, 395, 673, 1194, 1247
HpyCH4III ACNGT 2 cut(s) 673, 848
HpyCH4IV ACGT 5 cut(s) 225, 611, 615, 1000, 1233
HpyCH4V TGCA 9 cut(s) 182, 498, 549, 561, 609, 882, 937, 1226, 1289
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 188, 466, 968, 1127
HpySE526I ACGT 5 cut(s) 225, 611, 615, 1000, 1233
Hsp92I GRCGYC 1 cut(s) 1233
Hsp92II CATG 3 cut(s) 164, 1274, 1293
HspAI GCGC 3 cut(s) 10, 514, 1158
KflI GGGWCCC 1 cut(s) 259
KpnI GGTACC 1 cut(s) 786
Ksp22I TGATCA 3 cut(s) 108, 520, 658
Kzo9I GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
LmnI GCTCC 5 cut(s) 121, 511, 1101, 1165, 1212
LweI GCATC 5 cut(s) 67, 160, 433, 1168, 1276
MaeI CTAG 1 cut(s) 396
MaeII ACGT 5 cut(s) 225, 611, 615, 1000, 1233
MaeIII GTNAC 5 cut(s) 84, 94, 446, 569, 1252
MalI GATC 8 cut(s) 110, 522, 660, 833, 996, 1038, 1049, 1152
MbiI CCGCTC 2 cut(s) 632, 821
MboI GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
MfeI CAATTG 1 cut(s) 502
MflI RGATCY 3 cut(s) 994, 1036, 1047
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 5 cut(s) 164, 280, 389, 502, 1221
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 308, 1127
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 2 cut(s) 551, 1291
MscI TGGCCA 1 cut(s) 555
MslI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1294
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 2 cut(s) 256, 307
MspR9I CCNGG 5 cut(s) 82, 256, 257, 264, 348
MunI CAATTG 1 cut(s) 502
MvaI CCWGG 3 cut(s) 82, 264, 348
MvnI CGCG 3 cut(s) 12, 146, 1158
MwoI GCNNNNNNNGC 5 cut(s) 157, 188, 466, 968, 1127
NciI CCSGG 2 cut(s) 256, 257
NdeI CATATG 1 cut(s) 799
NdeII GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
NlaIII CATG 3 cut(s) 164, 1274, 1293
NlaIV GGNNCC 5 cut(s) 260, 261, 784, 975, 996
NmuCI GTSAC 4 cut(s) 84, 94, 446, 1252
NsiI ATGCAT 2 cut(s) 551, 1291
NspI RCATGY 1 cut(s) 1293
OliI CACNNNNGTG 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 1189
PasI CCCWGGG 1 cut(s) 263
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PfeI GAWTC 2 cut(s) 692, 983
Pfl23II CGTACG 1 cut(s) 612
PflMI CCANNNNNTGG 1 cut(s) 353
PleI GAGTC 2 cut(s) 308, 1127
PpsI GAGTC 2 cut(s) 308, 1127
Ppu21I YACGTR 3 cut(s) 226, 612, 616
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 80, 262, 346
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 3 cut(s) 80, 262, 346
PspLI CGTACG 1 cut(s) 612
PspN4I GGNNCC 5 cut(s) 260, 261, 784, 975, 996
PspPI GGNCC 3 cut(s) 71, 259, 1109
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 1189
PsrI GAACNNNNNNTAC 2 cut(s) 797, 829
PstNI CAGNNNCTG 1 cut(s) 1136
PsuI RGATCY 3 cut(s) 994, 1036, 1047
RsaI GTAC 4 cut(s) 614, 773, 784, 815
RsaNI GTAC 4 cut(s) 613, 772, 783, 814
RseI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1294
Rsr2I CGGWCCG 1 cut(s) 1109
RsrII CGGWCCG 1 cut(s) 1109
Sau3AI GATC 8 cut(s) 108, 520, 658, 831, 994, 1036, 1047, 1150
Sau96I GGNCC 3 cut(s) 71, 259, 1109
SchI GAGTC 2 cut(s) 308, 1127
ScrFI CCNGG 5 cut(s) 82, 256, 257, 264, 348
SfaNI GCATC 5 cut(s) 67, 160, 433, 1168, 1276
Sfr274I CTCGAG 1 cut(s) 1189
SinI GGWCC 2 cut(s) 259, 1109
SlaI CTCGAG 1 cut(s) 1189
SmaI CCCGGG 1 cut(s) 257
SmiMI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1294
SmlI CTYRAG 1 cut(s) 1189
SmoI CTYRAG 1 cut(s) 1189
Sse9I AATT 5 cut(s) 164, 280, 389, 502, 1221
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 8 cut(s) 54, 594, 630, 821, 960, 971, 1112, 1156
SspI AATATT 1 cut(s) 1066
SspMI CTAG 1 cut(s) 396
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 5 cut(s) 80, 254, 255, 262, 346
StyI CCWWGG 2 cut(s) 49, 533
TaaI ACNGT 2 cut(s) 673, 848
TaiI ACGT 5 cut(s) 228, 614, 618, 1003, 1236
TaqI TCGA 3 cut(s) 1171, 1183, 1190
TasI AATT 5 cut(s) 164, 280, 389, 502, 1221
TfiI GAWTC 2 cut(s) 692, 983
TscAI CASTG 6 cut(s) 93, 327, 533, 563, 711, 1261
TseFI GTSAC 4 cut(s) 84, 94, 446, 1252
Tsp45I GTSAC 4 cut(s) 84, 94, 446, 1252
TspDTI ATGAA 5 cut(s) 34, 177, 701, 718, 1260
TspGWI ACGGA 1 cut(s) 1122
TspMI CCCGGG 1 cut(s) 255
TspRI CASTG 6 cut(s) 93, 327, 533, 563, 711, 1261
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 259, 1109
XapI RAATTY 2 cut(s) 164, 280
XceI RCATGY 1 cut(s) 1293
XhoI CTCGAG 1 cut(s) 1189
XmaI CCCGGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 396
ZraI GACGTC 1 cut(s) 1234
Zsp2I ATGCAT 2 cut(s) 551, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.