Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008840

Physical Location & Seq

Genomic Coordinates Reverse (-)

45434905 .. 45436444

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAGATGTGTCAGGAAGCTATGACAGAGCCAAAGAAGTAAAGGAGTTTGATGAAACAAAAGCTGGAGTGAAAGGGCTAGTAGACTCAGGGGGACCAAAGTGCCAAAAGAACCTTTCAAGTTCAAGCACCCCAACCATTACAGACTTCCAAGTTCCACTTATAGATCTTGACGGGCTCGATGAGGATCTCCGGCGGGTGCAGATTGTGGAGGAAATCCACAAAGCATCGGAAACATGGGGGTTCTTTCAAATGGTTAATCATGGAGTTCCAAACAGGGTTATAGACAATTTGTTACAAGCAATAAGAGAATTTCATGAGCAGCCAAAGGAGATGAAGATGAAGTGGTACTCACGCGACTCTAAGCAAAGGGTAAGATACTATTGCAATGGAGATCTGTTGGTGGCAAAAACAGCAAACTGGAGGGATTCAATTGCTTTCGATTTCCAGGATGGCCCTTTGGACCCTGAGGCACTTCCCTCGGTTTGCAGACAGGCAGTGCAAGAATACATACAACACGTGATCAACCTAAGAGACGTGCTATCAAGTTTGTTGTCAGAGGCCTTGGGGATCAGCAGTGACTACCTAGCTGGCATAGAGTGCATGAAGAGCGAAACTCTGGTGTGCCATTACTACCCGGTATGTCCAGAACCAGACCTCACCATTGGCACAACCAATCATTCAGATCCTTCCTCCTTAACTATACTCTTACAAGACAACATCGGCGGCCTCCAAGTCCTCCACCAAGGTCACTGGGTTGACCTTCCCCCAAGGCACGGAGCCCTGGTGGCTAATATTGGTGATCTTATGCAGCTTATCACCAATGACAAGTTCAAAAGCGTGGAGCATAGGGTTCTGGCAGGAAGGATTGGCCCCAGGATATCAGCTGCATGCTTTCTCTATCCAAGTGCTACACATAGATTTAAACCTTATGGGCCAATTAAGGAGTTTCTGTCGTCTGACGACTTACCAATATATAGGGAAACTCATCTGGGAGAATATCTTGCCTATTACAAATCAAAGGGTTTAGATGGTAACTCTGCCCTTGGTCATTTTAAACTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.85

Weight (kDa)

5.62

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	52 - 152	7.7e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	205 - 300	1.6e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830
malus_domestica	MD10G1186400.v1.1
prunus_persica	Prupe.8G226000_v2.0.a1
pyrus_communis	pycom10g16130
rosa_chinensis	RchiOBHm_Chr3g0455441 RchiOBHm_Chr6g0288551
rosa_laevigata	RLG00000012389 RLG00000025362
rosa_multiflora	Rmu_sc0002058.1_g000015 Rmu_sc0003728.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424280 Rroxscaffold_7G00179990
rosa_rugosa	Rorug03G0007600 Rorug06G0197000
rosa_samantha	Rh3AG067000 Rh3BG069300 Rh3CG067800 Rh3DG069300 Rh6BG314300 Rh6CG321600 Rh6DG307400
rosa_wichuraiana	Rw3G005290 Rw6G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	357
AciI	CCGC	2 cut(s)	196, 726
AclWI	GGATC	3 cut(s)	195, 578, 680
AcsI	RAATTY	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	5 cut(s)	120, 126, 251, 432, 835
AjiI	CACGTC	1 cut(s)	538
AjnI	CCWGG	3 cut(s)	447, 783, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	5 cut(s)	21, 65, 590, 814, 887
AluI	AGCT	5 cut(s)	21, 65, 590, 814, 887
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	195, 578, 680
AoxI	GGCC	5 cut(s)	454, 561, 727, 871, 935
ApeKI	GCWGC	3 cut(s)	322, 811, 887
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	5 cut(s)	95, 455, 463, 872, 935
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	652, 811, 812
AvaII	GGWCC	2 cut(s)	95, 463
AxyI	CCTNAGG	1 cut(s)	468
BanII	GRGCYC	2 cut(s)	180, 784
BbrPI	CACGTG	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	334, 823, 874
BccI	CCATC	2 cut(s)	446, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	3 cut(s)	449, 785, 877
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	2 cut(s)	80, 587
BglI	GCCNNNNNGGC	1 cut(s)	788
BglII	AGATCT	2 cut(s)	166, 394
BisI	GCNGC	4 cut(s)	323, 727, 812, 888
BlsI	GCNGC	4 cut(s)	324, 728, 813, 889
Bme1390I	CCNGG	4 cut(s)	449, 638, 785, 877
Bme18I	GGWCC	2 cut(s)	95, 463
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	5 cut(s)	95, 455, 463, 872, 935
BmiI	GGNNCC	4 cut(s)	96, 465, 781, 874
BmrFI	CCNGG	4 cut(s)	449, 638, 785, 877
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	763
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BpmI	CTGGAG	2 cut(s)	87, 442
BpuMI	CCSGG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	7 cut(s)	480, 564, 745, 770, 783, 875, 1045
BsaXI	ACNNNNNCTCC	4 cut(s)	771, 801, 938, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	425, 758
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	394
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	449, 785, 877
BseDI	CCNNGG	7 cut(s)	480, 564, 745, 770, 783, 875, 1045
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	102, 459
BseNI	ACTGG	2 cut(s)	425, 758
BseXI	GCAGC	3 cut(s)	334, 823, 874
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	5 cut(s)	456, 563, 729, 873, 937
BsiSI	CCGG	2 cut(s)	193, 638
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	1 cut(s)	528
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	5 cut(s)	456, 563, 729, 873, 937
Bsp1286I	GDGCHC	2 cut(s)	180, 784
Bsp143I	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
BspACI	CCGC	2 cut(s)	196, 726
BspANI	GGCC	5 cut(s)	456, 563, 729, 873, 937
BspCNI	CTCAG	2 cut(s)	101, 460
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	4 cut(s)	96, 465, 781, 874
BspPI	GGATC	3 cut(s)	195, 578, 680
BspQI	GCTCTTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	425, 758
BssECI	CCNNGG	7 cut(s)	480, 564, 745, 770, 783, 875, 1045
BssMI	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
BssT1I	CCWWGG	4 cut(s)	564, 745, 770, 1045
Bst2UI	CCWGG	3 cut(s)	449, 785, 877
Bst6I	CTCTTC	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	592, 892
BstDEI	CTNAG	4 cut(s)	88, 363, 468, 530
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	7 cut(s)	169, 190, 397, 525, 573, 688, 805
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 600, 609, 788
BstNI	CCWGG	3 cut(s)	449, 785, 877
BstNSI	RCATGY	1 cut(s)	894
BstSCI	CCNGG	4 cut(s)	447, 636, 783, 875
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	334, 823, 874
BstX2I	RGATCY	4 cut(s)	166, 187, 394, 685
BstYI	RGATCY	4 cut(s)	166, 187, 394, 685
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	5 cut(s)	456, 563, 729, 873, 937
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	2 cut(s)	504, 583
BtsIMutI	CAGTG	3 cut(s)	504, 583, 751
Cac8I	GCNNGC	2 cut(s)	592, 892
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	5 cut(s)	95, 455, 463, 872, 935
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	5 cut(s)	237, 263, 317, 604, 891
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	88, 363, 468, 530
DpnI	GATC	7 cut(s)	168, 189, 396, 524, 572, 687, 804
DpnII	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
DraI	TTTAAA	2 cut(s)	925, 1057
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	4 cut(s)	564, 745, 770, 1045
Eco147I	AGGCCT	1 cut(s)	563
Eco24I	GRGCYC	2 cut(s)	180, 784
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	95, 463
Eco72I	CACGTG	1 cut(s)	520
Eco81I	CCTNAGG	1 cut(s)	468
EcoRII	CCWGG	3 cut(s)	447, 783, 875
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	4 cut(s)	564, 745, 770, 1045
EcoT38I	GRGCYC	2 cut(s)	180, 784
ErhI	CCWWGG	4 cut(s)	564, 745, 770, 1045
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	5 cut(s)	240, 266, 320, 607, 894
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	5 cut(s)	236, 262, 316, 603, 890
FauI	CCCGC	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	323, 727, 812, 888
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	180, 784
Fsp4HI	GCNGC	4 cut(s)	323, 727, 812, 888
FspBI	CTAG	2 cut(s)	80, 587
GluI	GCNGC	4 cut(s)	323, 727, 812, 888
GsuI	CTGGAG	2 cut(s)	87, 442
HaeIII	GGCC	5 cut(s)	456, 563, 729, 873, 937
HapII	CCGG	2 cut(s)	193, 638
Hin1II	CATG	5 cut(s)	240, 266, 320, 607, 894
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	3 cut(s)	86, 359, 428
HpaII	CCGG	2 cut(s)	193, 638
HphI	GGTGA	3 cut(s)	652, 811, 812
Hpy166II	GTNNAC	2 cut(s)	85, 760
Hpy188I	TCNGA	4 cut(s)	232, 559, 685, 961
Hpy188III	TCNNGA	4 cut(s)	15, 170, 317, 647
Hpy8I	GTNNAC	2 cut(s)	85, 760
HpyAV	CCTTC	3 cut(s)	699, 773, 858
HpyCH4IV	ACGT	2 cut(s)	519, 537
HpyCH4V	TGCA	7 cut(s)	202, 387, 489, 502, 603, 811, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 600, 609, 788
HpyF3I	CTNAG	4 cut(s)	88, 363, 468, 530
HpySE526I	ACGT	2 cut(s)	519, 537
Hsp92II	CATG	5 cut(s)	240, 266, 320, 607, 894
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	2 cut(s)	779, 844
Lsp1109I	GCAGC	3 cut(s)	334, 823, 874
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	80, 587
MaeII	ACGT	2 cut(s)	519, 537
MaeIII	GTNAC	4 cut(s)	294, 578, 749, 1034
MalI	GATC	7 cut(s)	168, 189, 396, 524, 572, 687, 804
MboI	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
MboII	GAAGA	3 cut(s)	17, 349, 619
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	4 cut(s)	166, 187, 394, 685
MhlI	GDGCHC	2 cut(s)	180, 784
MluCI	AATT	4 cut(s)	289, 311, 432, 939
MlyI	GAGTC	2 cut(s)	80, 353
MseI	TTAA	5 cut(s)	258, 698, 924, 942, 1056
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	2 cut(s)	193, 638
MspR9I	CCNGG	4 cut(s)	449, 638, 785, 877
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	3 cut(s)	449, 785, 877
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	413, 600, 609, 788
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
NlaIII	CATG	5 cut(s)	240, 266, 320, 607, 894
NlaIV	GGNNCC	4 cut(s)	96, 465, 781, 874
NmuCI	GTSAC	2 cut(s)	578, 749
NspI	RCATGY	1 cut(s)	894
PaeI	GCATGC	1 cut(s)	894
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	324, 728, 813, 889
PleI	GAGTC	2 cut(s)	80, 353
PmaCI	CACGTG	1 cut(s)	520
PmlI	CACGTG	1 cut(s)	520
PpsI	GAGTC	2 cut(s)	80, 353
Ppu21I	YACGTR	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	447, 783, 875
PspCI	CACGTG	1 cut(s)	520
PspGI	CCWGG	3 cut(s)	447, 783, 875
PspN4I	GGNNCC	4 cut(s)	96, 465, 781, 874
PspPI	GGNCC	5 cut(s)	95, 455, 463, 872, 935
PsuI	RGATCY	4 cut(s)	166, 187, 394, 685
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	5 cut(s)	258, 698, 924, 942, 1056
SatI	GCNGC	4 cut(s)	323, 727, 812, 888
Sau3AI	GATC	7 cut(s)	166, 187, 394, 522, 570, 685, 802
Sau96I	GGNCC	5 cut(s)	95, 455, 463, 872, 935
SchI	GAGTC	2 cut(s)	80, 353
ScrFI	CCNGG	4 cut(s)	449, 638, 785, 877
SduI	GDGCHC	2 cut(s)	180, 784
SfaNI	GCATC	1 cut(s)	236
SinI	GGWCC	2 cut(s)	95, 463
SphI	GCATGC	1 cut(s)	894
Sse9I	AATT	4 cut(s)	289, 311, 432, 939
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	2 cut(s)	196, 726
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	80, 587
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	4 cut(s)	447, 636, 783, 875
StyI	CCWWGG	4 cut(s)	564, 745, 770, 1045
TaiI	ACGT	2 cut(s)	522, 540
TaqI	TCGA	2 cut(s)	180, 441
TasI	AATT	4 cut(s)	289, 311, 432, 939
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	5 cut(s)	258, 698, 924, 942, 1056
Tru9I	TTAA	5 cut(s)	258, 698, 924, 942, 1056
TscAI	CASTG	3 cut(s)	504, 583, 758
TseFI	GTSAC	2 cut(s)	578, 749
TseI	GCWGC	3 cut(s)	322, 811, 887
Tsp45I	GTSAC	2 cut(s)	578, 749
TspDTI	ATGAA	5 cut(s)	69, 305, 350, 356, 620
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	3 cut(s)	504, 583, 758
VpaK11BI	GGWCC	2 cut(s)	95, 463
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	894
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	80, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.