Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008840

Physical Location & Seq

Genomic Coordinates Forward (+)

19513979 .. 19515285

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAAGATGGGACAGGAAGTTATGATAGAGCCAAAGAAGTAAAAGAGTTTGATGAAACAAAAGCTGGAGTGAAAGGGCTAATAGACTCAGGGGTGACCAAAGTGCCCAAGTTCCTCATGCATCCACCAGAGAACCTTTCAAGTTCAAGCACCCCAACCAGTGCAGACTTCCAAGTTCCACTTATAGATCTTGATGGGTTCGATGAGGATCTCCGGCGGGTGCAGATTGTTGAGGAAATCCAAAAAGCATCGGAAACATGGGGGTTCTTTCAAATGGTTAATCATGGAGTTCCAAACAGGGTTATAGACAATTTGTTACAAGCAATAAGAGAATTTCATGAGCAGCCAAAGGAGATGAAGATGAAGTGGTACTCACGCGACTCTAAGCAAAGGGTAAGATACTACTGCAATGGAGATCTGTTGGTGGCAAAAACAGCAAACTGGAGGGATTCAATTGCTTTCGATTTCCAGGATGGTCCTTTGGACCCTGAGGCACTTCCCTCAGTTTGCAGACAGGCAGTGCAAGAATACATAGAACACTTGATCAACCTAAGAGATGTGCTATCAAGTTTGTTGTCAGAGGCCTTAGGGATCAGCAGTGACTACCTAGCTGGCATAGAGTGCATGAAGAGCGAAACTCTGGTGTGCCATTATTACCCGGTATGTCCAGAACCAGACCTCACCATTGGGACAACCAAGCATTCAGATCCTTCCTCCTTAACTATACTCTTACAAGACAACATCGGCGGCCTCCAAGTCCTCCACCAAGGTCACTGGGTCGACCTTCCCCCAAGGCACGGAGCCCTGCTTATCACCAACGACAAGTTCAAAAGCGTGGAGCATAGGGTGCTGGCAGGAAGGGTTGGCCCCAGGATATCAGCTGCATGCTTTATCTATCCAAGTGCTACACATCGATTTAAACCTTATGGGCCACTTAAGGCGTTTCTGTCTGACGACTTACCTATATATAGGGAAACTCATGTGGGAGAATACCTTGCCTATTACAAATCAAAGGGTTTAGATGGTAACTCTGCCCTTAGTCATTTTAAACTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

352

Amino Acids

39.62

Weight (kDa)

5.72

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 159	2.2e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 298	4.9e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21830
malus_domestica	MD10G1186400.v1.1
prunus_persica	Prupe.8G226000_v2.0.a1
pyrus_communis	pycom10g16130
rosa_chinensis	RchiOBHm_Chr3g0455441 RchiOBHm_Chr6g0288551
rosa_laevigata	RLG00000012389 RLG00000025362
rosa_multiflora	Rmu_sc0002058.1_g000015 Rmu_sc0003728.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424280 Rroxscaffold_7G00179990
rosa_rugosa	Rorug03G0007600 Rorug06G0197000
rosa_samantha	Rh3AG067000 Rh3BG069300 Rh3CG067800 Rh3DG069300 Rh6BG314300 Rh6CG321600 Rh6DG307400
rosa_wichuraiana	Rw3G005290 Rw6G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	217, 747
AclWI	GGATC	3 cut(s)	216, 599, 701
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	5 cut(s)	141, 147, 272, 453, 829
AjnI	CCWGG	2 cut(s)	468, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	3 cut(s)	65, 611, 881
AluI	AGCT	3 cut(s)	65, 611, 881
AlwI	GGATC	3 cut(s)	216, 599, 701
AoxI	GGCC	4 cut(s)	582, 748, 865, 929
ApeKI	GCWGC	2 cut(s)	343, 881
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	476, 484, 866, 929
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	106, 673, 805
AvaII	GGWCC	2 cut(s)	476, 484
AxyI	CCTNAGG	2 cut(s)	489, 586
BaeGI	GKGCMC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	805
BbvI	GCAGC	2 cut(s)	355, 868
BccI	CCATC	4 cut(s)	2, 188, 467, 1016
BciT130I	CCWGG	2 cut(s)	470, 871
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	659
BfaI	CTAG	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	935
BglII	AGATCT	2 cut(s)	187, 415
BisI	GCNGC	3 cut(s)	344, 748, 882
BlsI	GCNGC	3 cut(s)	345, 749, 883
Bme1390I	CCNGG	3 cut(s)	470, 659, 871
Bme18I	GGWCC	2 cut(s)	476, 484
BmgT120I	GGNCC	4 cut(s)	476, 484, 866, 929
BmiI	GGNNCC	3 cut(s)	486, 802, 868
BmrFI	CCNGG	3 cut(s)	470, 659, 871
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	2 cut(s)	130, 257
BmuI	ACTGGG	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	2 cut(s)	87, 463
BpuMI	CCSGG	1 cut(s)	659
Bsa29I	ATCGAT	1 cut(s)	913
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	766, 791, 869
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	3 cut(s)	159, 446, 779
Bse21I	CCTNAGG	2 cut(s)	489, 586
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	470, 871
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	3 cut(s)	766, 791, 869
BseGI	GGATG	2 cut(s)	121, 478
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	102, 480, 516
BseNI	ACTGG	3 cut(s)	159, 446, 779
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	355, 868
BsgI	GTGCAG	2 cut(s)	183, 242
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	584, 750, 867, 931
BshVI	ATCGAT	1 cut(s)	913
BsiSI	CCGG	2 cut(s)	214, 659
BslFI	GGGAC	2 cut(s)	25, 703
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmFI	GGGAC	2 cut(s)	25, 703
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	4 cut(s)	584, 750, 867, 931
Bsp1286I	GDGCHC	2 cut(s)	108, 805
Bsp143I	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
BspACI	CCGC	2 cut(s)	217, 747
BspANI	GGCC	4 cut(s)	584, 750, 867, 931
BspCNI	CTCAG	3 cut(s)	101, 481, 515
BspDI	ATCGAT	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	486, 802, 868
BspPI	GGATC	3 cut(s)	216, 599, 701
BspQI	GCTCTTC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	935
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	159, 446, 779
BssECI	CCNNGG	3 cut(s)	766, 791, 869
BssMI	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
BssT1I	CCWWGG	2 cut(s)	766, 791
Bst2UI	CCWGG	2 cut(s)	470, 871
Bst6I	CTCTTC	1 cut(s)	623
BstAFI	CTTAAG	1 cut(s)	935
BstAPI	GCANNNNNTGC	2 cut(s)	621, 847
BstC8I	GCNNGC	3 cut(s)	613, 852, 886
BstDEI	CTNAG	7 cut(s)	88, 384, 489, 502, 551, 586, 1037
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	121, 478
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	6 cut(s)	190, 211, 418, 546, 594, 709
BstMBI	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 847
BstNI	CCWGG	2 cut(s)	470, 871
BstNSI	RCATGY	1 cut(s)	888
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	468, 657, 869
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	355, 868
BstX2I	RGATCY	4 cut(s)	187, 208, 415, 706
BstYI	RGATCY	4 cut(s)	187, 208, 415, 706
Bsu15I	ATCGAT	1 cut(s)	913
Bsu36I	CCTNAGG	2 cut(s)	489, 586
BsuRI	GGCC	4 cut(s)	584, 750, 867, 931
BsuTUI	ATCGAT	1 cut(s)	913
BtsCI	GGATG	2 cut(s)	121, 478
BtsI	GCAGTG	2 cut(s)	525, 604
BtsIMutI	CAGTG	4 cut(s)	166, 525, 604, 772
Cac8I	GCNNGC	3 cut(s)	613, 852, 886
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	4 cut(s)	476, 484, 866, 929
ClaI	ATCGAT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	7 cut(s)	118, 258, 284, 338, 625, 885, 980
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	7 cut(s)	88, 384, 489, 502, 551, 586, 1037
DpnI	GATC	6 cut(s)	189, 210, 417, 545, 593, 708
DpnII	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
DraI	TTTAAA	2 cut(s)	919, 1048
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	2 cut(s)	766, 791
Eco147I	AGGCCT	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	805
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	2 cut(s)	476, 484
Eco81I	CCTNAGG	2 cut(s)	489, 586
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	468, 869
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	2 cut(s)	766, 791
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	2 cut(s)	766, 791
FaeI	CATG	7 cut(s)	121, 261, 287, 341, 628, 888, 983
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	25, 703
FatI	CATG	7 cut(s)	117, 257, 283, 337, 624, 884, 979
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	344, 748, 882
FokI	GGATG	2 cut(s)	108, 485
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	3 cut(s)	344, 748, 882
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	3 cut(s)	344, 748, 882
GsuI	CTGGAG	2 cut(s)	87, 463
HaeIII	GGCC	4 cut(s)	584, 750, 867, 931
HapII	CCGG	2 cut(s)	214, 659
Hin1II	CATG	7 cut(s)	121, 261, 287, 341, 628, 888, 983
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	3 cut(s)	86, 380, 449
HpaII	CCGG	2 cut(s)	214, 659
HphI	GGTGA	3 cut(s)	106, 673, 805
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	4 cut(s)	253, 580, 706, 952
Hpy188III	TCNNGA	3 cut(s)	191, 338, 668
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	3 cut(s)	720, 794, 852
HpyCH4V	TGCA	8 cut(s)	121, 164, 223, 408, 510, 523, 624, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 847
HpyF3I	CTNAG	7 cut(s)	88, 384, 489, 502, 551, 586, 1037
Hsp92II	CATG	7 cut(s)	121, 261, 287, 341, 628, 888, 983
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	800, 838
Lsp1109I	GCAGC	2 cut(s)	355, 868
LweI	GCATC	2 cut(s)	130, 257
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	5 cut(s)	94, 315, 599, 770, 1025
MalI	GATC	6 cut(s)	189, 210, 417, 545, 593, 708
MboI	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
MboII	GAAGA	3 cut(s)	17, 370, 640
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	4 cut(s)	187, 208, 415, 706
MhlI	GDGCHC	2 cut(s)	108, 805
MluCI	AATT	3 cut(s)	310, 332, 453
MlyI	GAGTC	2 cut(s)	80, 374
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	5 cut(s)	279, 719, 918, 936, 1047
MspA1I	CMGCKG	1 cut(s)	881
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	2 cut(s)	214, 659
MspR9I	CCNGG	3 cut(s)	470, 659, 871
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	2 cut(s)	470, 871
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 847
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
NlaIII	CATG	7 cut(s)	121, 261, 287, 341, 628, 888, 983
NlaIV	GGNNCC	3 cut(s)	486, 802, 868
NmuCI	GTSAC	3 cut(s)	94, 599, 770
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	1 cut(s)	888
PaeI	GCATGC	1 cut(s)	888
PagI	TCATGA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	623
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	345, 749, 883
PleI	GAGTC	2 cut(s)	80, 374
PpsI	GAGTC	2 cut(s)	80, 374
Psp6I	CCWGG	2 cut(s)	468, 869
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	468, 869
PspN4I	GGNNCC	3 cut(s)	486, 802, 868
PspPI	GGNCC	4 cut(s)	476, 484, 866, 929
PsuI	RGATCY	4 cut(s)	187, 208, 415, 706
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SalI	GTCGAC	1 cut(s)	779
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	279, 719, 918, 936, 1047
SatI	GCNGC	3 cut(s)	344, 748, 882
Sau3AI	GATC	6 cut(s)	187, 208, 415, 543, 591, 706
Sau96I	GGNCC	4 cut(s)	476, 484, 866, 929
SchI	GAGTC	2 cut(s)	80, 374
ScrFI	CCNGG	3 cut(s)	470, 659, 871
SduI	GDGCHC	2 cut(s)	108, 805
SfaNI	GCATC	2 cut(s)	130, 257
SinI	GGWCC	2 cut(s)	476, 484
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
SphI	GCATGC	1 cut(s)	888
Sse9I	AATT	3 cut(s)	310, 332, 453
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	2 cut(s)	217, 747
SspMI	CTAG	1 cut(s)	608
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	3 cut(s)	468, 657, 869
StyI	CCWWGG	2 cut(s)	766, 791
TaqI	TCGA	4 cut(s)	201, 462, 780, 913
TasI	AATT	3 cut(s)	310, 332, 453
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	5 cut(s)	279, 719, 918, 936, 1047
Tru9I	TTAA	5 cut(s)	279, 719, 918, 936, 1047
TscAI	CASTG	4 cut(s)	166, 525, 604, 779
TseFI	GTSAC	3 cut(s)	94, 599, 770
TseI	GCWGC	2 cut(s)	343, 881
Tsp45I	GTSAC	3 cut(s)	94, 599, 770
TspDTI	ATGAA	5 cut(s)	69, 326, 371, 377, 641
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	4 cut(s)	166, 525, 604, 779
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	476, 484
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	888
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.