Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004234

Physical Location & Seq

Genomic Coordinates Forward (+)

31414203 .. 31415063

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1215800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTCGACCGAGACCGCCCTGCTTACTGGGACGACATGCTCTACCTCTGCTCACATCTTCTCAAATCCGACGGAATCATTGACAACACATTTGAAGAGCTCGAGCCCACTTCCACCCTAAAAGGCTATAGTTCAAGCAAAAGGGTTGGAGACAAATGGGATGGGAAGAGGTTTCTGTGGGTGGTGAAGAAGCCGCCGGCAGATGTGAAAACAAAGCAGCTTCATGGAGTTGACAACGACTTTGATTTGGAGGGTCTGTTGCCTGAAGGGTTCTTGGAAAGGACCAATGACAGGGGCATGGTGGTGCTCGAAGCGGTGGTTTCCGGCGTACCATTGATTGATTGGCCACTGTACGCGGAGCAGCATCTGGACAGGAATAATCTGGTGAAGGACATGGAAATAGCGACCGGGGTGGAGCAGAGAGAGGAAGATGGATTCCTGAGCGGGGACGAATTGGAGAGGAAAGTGAGGGAGTTGATGGAGTCGGAAGGAGGGAGAGCTCTTAGAGAAAGGAGCAAGCAAATGCAGAGATGGCAATGGCTGCTTTGGGAGAGACTGGTTCGTAGACTTGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

193

Amino Acids

22.46

Weight (kDa)

5.0

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31920
malus_domestica	MD08G1218900.v1.1 MD08G1219100.v1.1 MD10G1215400.v1.1 MD10G1215800.v1.1 MD10G1216100.v1.1 MD15G1407300.v1.1 MD15G1407600.v1.1
prunus_persica	Prupe.1G547500_v2.0.a1 Prupe.1G547700_v2.0.a1 Prupe.1G547800_v2.0.a1 Prupe.1G554300_v2.0.a1 Prupe.1G554400_v2.0.a1
pyrus_communis	pycom08g18960 pycom08g18970 pycom15g36350
rosa_chinensis	RchiOBHm_Chr7g0227931 RchiOBHm_Chr7g0227951
rosa_laevigata	RLG00000001603
rosa_multiflora	Rmu_sc0005670.1_g000012 Rmu_ssc0000011.1_g000008
rosa_roxburghii	Rroxscaffold_3G00231690
rosa_rugosa	Rorug07G0244600 Rorug07G0244900 Rorug07G0244900
rosa_samantha	Rh7AG398200 Rh7AG398500 Rh7BG379500 Rh7CG416200 Rh7DG393700 Rh7DG394100
rosa_wichuraiana	Rw7G033120 Rw7G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	1 cut(s)	356
AciI	CCGC	5 cut(s)	16, 194, 314, 356, 444
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	330, 353
AfiI	CCNNNNNNNGG	2 cut(s)	291, 445
AgsI	TTSAA	3 cut(s)	95, 135, 572
AluBI	AGCT	3 cut(s)	100, 220, 500
AluI	AGCT	3 cut(s)	100, 220, 500
Alw21I	GWGCWC	3 cut(s)	102, 309, 502
Alw26I	GTCTC	3 cut(s)	6, 144, 547
AlwNI	CAGNNNCTG	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	217, 361, 541
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 224, 256
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	196, 397
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	3 cut(s)	102, 108, 502
Bbv12I	GWGCWC	3 cut(s)	102, 309, 502
BbvI	GCAGC	3 cut(s)	229, 373, 528
BccI	CCATC	4 cut(s)	155, 425, 472, 525
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	6, 144, 547
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	4 cut(s)	194, 218, 362, 542
BlsI	GCNGC	4 cut(s)	195, 219, 363, 543
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 445
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	32, 561
Bse3DI	GCAATG	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	291, 445
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	32, 561
BseXI	GCAGC	3 cut(s)	229, 373, 528
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	2 cut(s)	10, 408
BshFI	GGCC	1 cut(s)	346
BsiEI	CGRYCG	2 cut(s)	10, 408
BsiHKAI	GWGCWC	3 cut(s)	102, 309, 502
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	197, 324, 408
BslFI	GGGAC	2 cut(s)	44, 461
BslI	CCNNNNNNNGG	2 cut(s)	291, 445
BsmAI	GTCTC	3 cut(s)	6, 144, 547
BsmFI	GGGAC	2 cut(s)	44, 461
BsnI	GGCC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	6
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	102, 108, 309, 502
BspACI	CCGC	5 cut(s)	16, 194, 314, 356, 444
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	32, 561
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	2 cut(s)	90, 161
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	198, 518
BstDEI	CTNAG	3 cut(s)	440, 503, 576
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	356
BstMAI	GTCTC	3 cut(s)	6, 144, 547
BstMCI	CGRYCG	2 cut(s)	10, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 541
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	229, 373, 528
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	198, 518
CaiI	CAGNNNCTG	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	329, 352
CviAII	CATG	4 cut(s)	37, 224, 298, 394
CviJI	RGCY	8 cut(s)	100, 106, 126, 193, 220, 346, 500, 541
CviKI_1	RGCY	8 cut(s)	100, 106, 126, 193, 220, 346, 500, 541
CviQI	GTAC	2 cut(s)	329, 352
DdeI	CTNAG	3 cut(s)	440, 503, 576
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	90, 161
EarI	CTCTTC	2 cut(s)	90, 161
Ecl136II	GAGCTC	2 cut(s)	100, 500
Eco24I	GRGCYC	3 cut(s)	102, 108, 502
Eco31I	GGTCTC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	2 cut(s)	100, 500
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	2 cut(s)	100, 500
EcoT38I	GRGCYC	3 cut(s)	102, 108, 502
FaeI	CATG	4 cut(s)	40, 227, 301, 397
FaiI	YATR	5 cut(s)	38, 129, 225, 299, 395
FaqI	GGGAC	2 cut(s)	44, 461
FatI	CATG	4 cut(s)	36, 223, 297, 393
FauI	CCCGC	1 cut(s)	437
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	4 cut(s)	194, 218, 362, 542
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	3 cut(s)	102, 108, 502
Fsp4HI	GCNGC	4 cut(s)	194, 218, 362, 542
GluI	GCNGC	4 cut(s)	194, 218, 362, 542
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	3 cut(s)	197, 324, 408
Hin1II	CATG	4 cut(s)	40, 227, 301, 397
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	75, 435, 482
HpaII	CCGG	3 cut(s)	197, 324, 408
HphI	GGTGA	2 cut(s)	196, 397
Hpy166II	GTNNAC	2 cut(s)	232, 566
Hpy188I	TCNGA	2 cut(s)	70, 487
Hpy188III	TCNNGA	2 cut(s)	368, 439
Hpy8I	GTNNAC	2 cut(s)	232, 566
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	260, 382, 482
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 541
HpyF3I	CTNAG	3 cut(s)	440, 503, 576
Hsp92II	CATG	4 cut(s)	40, 227, 301, 397
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	3 cut(s)	358, 415, 513
Lsp1109I	GCAGC	3 cut(s)	229, 373, 528
LweI	GCATC	1 cut(s)	373
MbiI	CCGCTC	1 cut(s)	444
MboII	GAAGA	5 cut(s)	50, 107, 178, 199, 440
MhlI	GDGCHC	4 cut(s)	102, 108, 309, 502
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	3 cut(s)	93, 127, 465
MnlI	CCTC	7 cut(s)	56, 162, 244, 418, 453, 462, 485
Mox20I	TGGCCA	1 cut(s)	346
MroNI	GCCGGC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	346
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	3 cut(s)	197, 324, 408
MspR9I	CCNGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	532, 541
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	409
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	4 cut(s)	40, 227, 301, 397
NspI	RCATGY	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	75, 435
PkrI	GCNGC	4 cut(s)	195, 219, 363, 543
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp124BI	GAGCTC	2 cut(s)	102, 502
PspPI	GGNCC	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	330, 353
RsaNI	GTAC	2 cut(s)	329, 352
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	2 cut(s)	102, 502
SapI	GCTCTTC	1 cut(s)	90
SatI	GCNGC	4 cut(s)	194, 218, 362, 542
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	4 cut(s)	102, 108, 309, 502
SetI	ASST	5 cut(s)	48, 102, 173, 222, 502
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	5 cut(s)	16, 194, 314, 356, 444
SstI	GAGCTC	2 cut(s)	102, 502
StyD4I	CCNGG	1 cut(s)	407
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	6, 102, 309
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	452
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	75, 435
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	3 cut(s)	217, 361, 541
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.