RchiOBHm_Chr7g0227931

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004234
Physical Location & Seq
Reverse (-)
51206533 .. 51207602
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20415

Sequence Viewer

Length: 879 bp
ATGCCTGAGCCGATGCTCGATCGGAATGATCCGGCTTATTTGGACATGGTCTACTTCTGCTCTCATCTTGCTCTATCAGATGGAATCATAGCCAACACTTTTGAAGAGCTCGAGACTCCAGCGGCGATTAAGGCCATTTCTGAAGGTCGATGTGTTCCTGATGCGCCCACTCCTCCTGTCTATTATATCGGACCTTTGATCGATGAAGAAAAGGCATCCGGCTCTGCACATTCGGAGGAGGAATGTCTGTTATGGCTCGATAAGCAGCCGAGTAGGAGCGTGGTGTATCTCTGTTTCGGAAGCATGGGGTCATTCTCGGAAGCCCAAGTGAGAGAAATTGCCAGTGGGTTGGAGAGGAGCGGTCAGAGGTTCTTATGGGTGGTGAAAAAGCCACCTGTTGACAACACCAAACAGAGTCATGGCGTGGATGATTTCAGTTTGGAAGCTCTTTTGCCGGAAGGCTTCGTGGAGAGGACTAAAGACAGGGGCCTGGTGGTGAAGTCGTGGGCGCCGCAGGTGCTGGTACTGAAGAAGGTAGCCGTGGGCGGGTTCGTGACTCACTGTGGGTGGAACTCGGTGCTAGAATCGGTGATAGCCGGGGTGCCAATGGTGGCGTGGCCGCTCTATGCAGAGCAGCATCTGAACAGGAGTGTTCTGGTGAATGACATGAAAATGGCTATTGATGTGGAGCAGAGAAAGGAAGATGGGTTCGTGACTGGGGATGAAGTGGAGAGAAGAGTTAGAGAGTTGATGGAGTCGGAAAAGGGAAGAGAGCTCAGAGAGAGGAGTTTGAAAATTGGGGAGATGGCTTTGGGTGCTGTGGGAGAGCTTGGTTCCTCCAGAAGAGCTCTGGCCAACTTTGTTAACGCCATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

292

Amino Acids

32.34

Weight (kDa)

5.0

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 83 - 220 1e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 2 cut(s) 508, 601
AccBSI CCGCTC 2 cut(s) 360, 622
AccI GTMKAC 1 cut(s) 51
AciI CCGC 5 cut(s) 122, 360, 512, 546, 620
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 617, 852
AcuI CTGAAG 2 cut(s) 162, 548
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 3 cut(s) 104, 793, 875
AjnI CCWGG 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 5 cut(s) 109, 446, 775, 829, 848
AluI AGCT 5 cut(s) 109, 446, 775, 829, 848
Alw21I GWGCWC 3 cut(s) 111, 777, 850
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 23
AlwNI CAGNNNCTG 2 cut(s) 520, 640
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 4 cut(s) 132, 487, 617, 852
ApeKI GCWGC 2 cut(s) 265, 634
AspLEI GCGC 2 cut(s) 166, 511
AspS9I GGNCC 2 cut(s) 191, 487
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 4 cut(s) 394, 508, 601, 670
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 854
BanI GGYRCC 2 cut(s) 508, 601
BanII GRGCYC 3 cut(s) 111, 777, 850
Bbv12I GWGCWC 3 cut(s) 111, 777, 850
BbvI GCAGC 2 cut(s) 277, 646
BccI CCATC 4 cut(s) 74, 698, 745, 799
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 491
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 5 cut(s) 123, 266, 512, 620, 635
BlsI GCNGC 5 cut(s) 124, 267, 513, 621, 636
Bme1390I CCNGG 2 cut(s) 491, 598
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 191, 487
BmiI GGNNCC 4 cut(s) 488, 510, 603, 835
BmrFI CCNGG 2 cut(s) 491, 598
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 4 cut(s) 3, 151, 224, 646
BmuI ACTGGG 1 cut(s) 726
BpmI CTGGAG 2 cut(s) 102, 823
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 598
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 2 cut(s) 540, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 342, 721
BseBI CCWGG 1 cut(s) 491
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 540, 597
BseGI GGATG 3 cut(s) 215, 433, 727
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 790
BseNI ACTGG 2 cut(s) 342, 721
BseRI GAGGAG 4 cut(s) 162, 251, 370, 799
BseXI GCAGC 2 cut(s) 277, 646
BsgI GTGCAG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 4 cut(s) 134, 489, 619, 854
BshNI GGYRCC 2 cut(s) 508, 601
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 3 cut(s) 111, 777, 850
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 4 cut(s) 32, 219, 455, 597
BslI CCNNNNNNNGG 1 cut(s) 546
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 4 cut(s) 134, 489, 619, 854
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 111, 777, 850
Bsp143I GATC 3 cut(s) 19, 28, 198
BspACI CCGC 5 cut(s) 122, 360, 512, 546, 620
BspANI GGCC 4 cut(s) 134, 489, 619, 854
BspCNI CTCAG 1 cut(s) 789
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 488, 510, 603, 835
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 1 cut(s) 23
BspQI GCTCTTC 2 cut(s) 99, 838
BspT107I GGYRCC 2 cut(s) 508, 601
BsrBI CCGCTC 2 cut(s) 360, 622
BsrI ACTGG 2 cut(s) 342, 721
BssECI CCNNGG 2 cut(s) 540, 597
BssMI GATC 3 cut(s) 19, 28, 198
BssNI GRCGYC 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 4 cut(s) 99, 730, 763, 838
BstACI GRCGYC 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 6, 776
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 3 cut(s) 215, 433, 727
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 2 cut(s) 166, 511
BstKTI GATC 3 cut(s) 22, 31, 201
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 19, 28, 198
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 4 cut(s) 131, 262, 517, 815
BstNI CCWGG 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 489, 596
BstV1I GCAGC 2 cut(s) 277, 646
BstXI CCANNNNNNTGG 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 4 cut(s) 134, 489, 619, 854
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 3 cut(s) 215, 433, 727
BtsIMutI CAGTG 2 cut(s) 349, 559
BveI ACCTGC 1 cut(s) 505
CaiI CAGNNNCTG 2 cut(s) 520, 640
CfoI GCGC 2 cut(s) 166, 511
Cfr13I GGNCC 2 cut(s) 191, 487
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 524
CviAII CATG 4 cut(s) 46, 304, 419, 667
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 2 cut(s) 6, 776
DinI GGCGCC 1 cut(s) 510
DpnI GATC 3 cut(s) 21, 30, 200
DpnII GATC 3 cut(s) 19, 28, 198
EaeI YGGCCR 2 cut(s) 617, 852
Eam1104I CTCTTC 4 cut(s) 99, 730, 763, 838
EarI CTCTTC 4 cut(s) 99, 730, 763, 838
Ecl136II GAGCTC 3 cut(s) 109, 775, 848
Eco24I GRGCYC 3 cut(s) 111, 777, 850
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 3 cut(s) 109, 775, 848
Eco57I CTGAAG 2 cut(s) 162, 548
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 3 cut(s) 109, 775, 848
EcoO109I RGGNCCY 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 489
EcoT38I GRGCYC 3 cut(s) 111, 777, 850
EgeI GGCGCC 1 cut(s) 510
EheI GGCGCC 1 cut(s) 510
FaeI CATG 4 cut(s) 49, 307, 422, 670
FaiI YATR 9 cut(s) 47, 89, 186, 253, 305, 376, 420, 627, 668
FatI CATG 4 cut(s) 45, 303, 418, 666
FauI CCCGC 1 cut(s) 539
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 123, 266, 512, 620, 635
FokI GGATG 3 cut(s) 202, 440, 734
FriOI GRGCYC 3 cut(s) 111, 777, 850
Fsp4HI GCNGC 5 cut(s) 123, 266, 512, 620, 635
FspBI CTAG 1 cut(s) 581
GlaI GCGC 2 cut(s) 165, 510
GluI GCNGC 5 cut(s) 123, 266, 512, 620, 635
GsuI CTGGAG 2 cut(s) 102, 823
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 4 cut(s) 134, 489, 619, 854
HapII CCGG 4 cut(s) 32, 219, 455, 597
HhaI GCGC 2 cut(s) 166, 511
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 4 cut(s) 49, 307, 422, 670
Hin6I GCGC 2 cut(s) 164, 509
HinP1I GCGC 2 cut(s) 164, 509
HincII GTYRAC 2 cut(s) 400, 865
HindII GTYRAC 2 cut(s) 400, 865
HinfI GANTC 6 cut(s) 84, 115, 415, 556, 584, 755
HpaI GTTAAC 1 cut(s) 865
HpaII CCGG 4 cut(s) 32, 219, 455, 597
HphI GGTGA 4 cut(s) 394, 508, 601, 670
Hpy166II GTNNAC 3 cut(s) 52, 400, 865
Hpy188III TCNNGA 5 cut(s) 112, 158, 553, 712, 840
Hpy8I GTNNAC 3 cut(s) 52, 400, 865
HpyAV CCTTC 3 cut(s) 137, 452, 526
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4V TGCA 2 cut(s) 227, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 262, 517, 815
HpyF3I CTNAG 2 cut(s) 6, 776
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 4 cut(s) 49, 307, 422, 670
HspAI GCGC 2 cut(s) 164, 509
KasI GGCGCC 1 cut(s) 508
KspAI GTTAAC 1 cut(s) 865
Kzo9I GATC 3 cut(s) 19, 28, 198
LguI GCTCTTC 2 cut(s) 99, 838
LmnI GCTCC 3 cut(s) 276, 357, 688
Lsp1109I GCAGC 2 cut(s) 277, 646
LweI GCATC 4 cut(s) 3, 151, 224, 646
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 2 cut(s) 553, 712
MalI GATC 3 cut(s) 21, 30, 200
MbiI CCGCTC 2 cut(s) 360, 622
MboI GATC 3 cut(s) 19, 28, 198
MboII GAAGA 7 cut(s) 116, 218, 541, 713, 747, 780, 855
MhlI GDGCHC 3 cut(s) 111, 777, 850
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 2 cut(s) 336, 795
MluNI TGGCCA 1 cut(s) 854
Mly113I GGCGCC 1 cut(s) 509
MlyI GAGTC 4 cut(s) 109, 424, 550, 764
MmeI TCCRAC 2 cut(s) 330, 738
MnlI CCTC 8 cut(s) 183, 229, 232, 348, 360, 465, 777, 847
Mox20I TGGCCA 1 cut(s) 854
MscI TGGCCA 1 cut(s) 854
MseI TTAA 2 cut(s) 129, 864
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 4 cut(s) 32, 219, 455, 597
MspR9I CCNGG 2 cut(s) 491, 598
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 131, 262, 517, 815
NarI GGCGCC 1 cut(s) 509
NciI CCSGG 1 cut(s) 598
NdeII GATC 3 cut(s) 19, 28, 198
NlaIII CATG 4 cut(s) 49, 307, 422, 670
NlaIV GGNNCC 4 cut(s) 488, 510, 603, 835
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 553, 712
PaeR7I CTCGAG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 505
PciSI GCTCTTC 2 cut(s) 99, 838
PfeI GAWTC 2 cut(s) 84, 584
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 5 cut(s) 124, 267, 513, 621, 636
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 4 cut(s) 109, 423, 550, 763
PluTI GGCGCC 1 cut(s) 512
PpsI GAGTC 4 cut(s) 109, 423, 550, 763
Psp124BI GAGCTC 3 cut(s) 111, 777, 850
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 488, 510, 603, 835
PspPI GGNCC 2 cut(s) 191, 487
PstNI CAGNNNCTG 2 cut(s) 520, 640
PsyI GACNNNGTC 1 cut(s) 47
PvuI CGATCG 1 cut(s) 22
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 671
SacI GAGCTC 3 cut(s) 111, 777, 850
SapI GCTCTTC 2 cut(s) 99, 838
SaqAI TTAA 2 cut(s) 129, 864
SatI GCNGC 5 cut(s) 123, 266, 512, 620, 635
Sau3AI GATC 3 cut(s) 19, 28, 198
Sau96I GGNCC 2 cut(s) 191, 487
SchI GAGTC 4 cut(s) 109, 424, 550, 764
ScrFI CCNGG 2 cut(s) 491, 598
SduI GDGCHC 3 cut(s) 111, 777, 850
SfaNI GCATC 4 cut(s) 3, 151, 224, 646
SfoI GGCGCC 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 336, 795
SsiI CCGC 5 cut(s) 122, 360, 512, 546, 620
SspDI GGCGCC 1 cut(s) 508
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 3 cut(s) 111, 777, 850
StyD4I CCNGG 2 cut(s) 489, 596
TaaI ACNGT 1 cut(s) 563
TaqI TCGA 5 cut(s) 18, 111, 148, 201, 258
TasI AATT 2 cut(s) 336, 795
TauI GCSGC 3 cut(s) 125, 514, 622
TfiI GAWTC 2 cut(s) 84, 584
Tru1I TTAA 2 cut(s) 129, 864
Tru9I TTAA 2 cut(s) 129, 864
TscAI CASTG 2 cut(s) 349, 566
TseFI GTSAC 2 cut(s) 553, 712
TseI GCWGC 2 cut(s) 265, 634
Tsp45I GTSAC 2 cut(s) 553, 712
TspDTI ATGAA 3 cut(s) 219, 683, 738
TspRI CASTG 2 cut(s) 349, 566
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 2 cut(s) 612, 847
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.