Rorug07G0244900

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000267
Physical Location & Seq
Forward (+)
22617977 .. 22622089
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0244900.1

Sequence Viewer

Length: 630 bp
ATGAGCGGAGACTCTCCGGCACCGGCAACTGGACCCGGACTGGTGATATCGACCACGGCACCCATCCTCTCCTTCCTCGTCTCCGCCTCCACCGACCCACACCTCTCCAAGGACCTCCAGCAAACCGCCTCCAAGCTCTCCTCCAAATCCAATGTCCCCTACCGGGCCATCCGCGCCCTCTGGGTCGCTTCCCGGGCCTCCACCCGGCCCCAATTGGTCAAGCTCTTCTCCGGTTCCGGGTTCGTCTTCACCAGCCCCAAGCCCAGAGAGAAGAGTGAGGAGCTGAAGGCGAGGCTGAAGAAGCTGGAGGAGATATCAGAGAGGAATGCATATGCAGAGCTTGTGAAGGATATAACGCCTCGGAAAGATAGCGCACCGGAGCCGTTCTCTTCTTACAAGGATCAATTGGGCTTTGGTTTACATGTTGTGGTGACCATGTTTACCGGCTATTTGGTTGGATATGCTGCATTCAGAGCATTGTTTAGCCACAGTCCTGTGATGAATGCTGCTGGAGGCATTCTTGGATTGGTCATTGGCATGCTTGTAGAAACGCTTATTTTCATAATTCAAGCTTCCCGCTACGATCTTAAATCATCTTCTTCCACATCGAAGCTAAAGAAGGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

209

Amino Acids

22.61

Weight (kDa)

9.75

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 58
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 174
AciI CCGC 5 cut(s) 6, 84, 126, 172, 577
AclWI GGATC 1 cut(s) 408
AcuI CTGAAG 2 cut(s) 305, 317
AfiI CCNNNNNNNGG 5 cut(s) 29, 109, 163, 204, 237
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 1 cut(s) 569
AluBI AGCT 7 cut(s) 136, 223, 283, 304, 340, 572, 613
AluI AGCT 7 cut(s) 136, 223, 283, 304, 340, 572, 613
Alw26I GTCTC 2 cut(s) 3, 85
AlwI GGATC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 3 cut(s) 165, 195, 206
ApeKI GCWGC 2 cut(s) 464, 506
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspLEI GCGC 2 cut(s) 176, 374
AspS9I GGNCC 5 cut(s) 32, 112, 165, 195, 207
AsuC2I CCSGG 6 cut(s) 36, 164, 193, 194, 205, 238
AsuHPI GGTGA 3 cut(s) 55, 241, 442
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 32, 112
BanI GGYRCC 2 cut(s) 19, 58
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 451, 493
BccI CCATC 2 cut(s) 71, 176
BceAI ACGGC 2 cut(s) 72, 367
BcnI CCSGG 6 cut(s) 36, 164, 193, 194, 205, 238
BcoDI GTCTC 2 cut(s) 3, 85
BisI GCNGC 2 cut(s) 465, 507
BlsI GCNGC 2 cut(s) 466, 508
Bme1390I CCNGG 6 cut(s) 36, 164, 193, 194, 205, 238
Bme18I GGWCC 2 cut(s) 32, 112
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 5 cut(s) 32, 112, 165, 195, 207
BmiI GGNNCC 6 cut(s) 21, 34, 60, 209, 235, 381
BmrFI CCNGG 6 cut(s) 36, 164, 193, 194, 205, 238
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 3 cut(s) 101, 326, 531
BpuMI CCSGG 6 cut(s) 36, 164, 193, 194, 205, 238
BsaJI CCNNGG 4 cut(s) 54, 108, 192, 359
BsaWI WCCGGW 2 cut(s) 230, 376
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 109, 163, 204, 237
Bse118I RCCGGY 2 cut(s) 22, 443
Bse1I ACTGG 2 cut(s) 34, 45
BseDI CCNNGG 4 cut(s) 54, 108, 192, 359
BseGI GGATG 2 cut(s) 63, 168
BseLI CCNNNNNNNGG 5 cut(s) 29, 109, 163, 204, 237
BseNI ACTGG 2 cut(s) 34, 45
BseRI GAGGAG 3 cut(s) 130, 293, 323
BseXI GCAGC 2 cut(s) 451, 493
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 167, 197, 208
BshNI GGYRCC 2 cut(s) 19, 58
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 5 cut(s) 29, 109, 163, 204, 237
BsmAI GTCTC 2 cut(s) 3, 85
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 4 cut(s) 331, 467, 508, 516
BsnI GGCC 3 cut(s) 167, 197, 208
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 3 cut(s) 400, 583, 622
BspACI CCGC 5 cut(s) 6, 84, 126, 172, 577
BspANI GGCC 3 cut(s) 167, 197, 208
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 6 cut(s) 21, 34, 60, 209, 235, 381
BspPI GGATC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 19, 58
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 2 cut(s) 22, 443
BsrI ACTGG 2 cut(s) 34, 45
BssAI RCCGGY 2 cut(s) 22, 443
BssECI CCNNGG 4 cut(s) 54, 108, 192, 359
BssMI GATC 3 cut(s) 400, 583, 622
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 3 cut(s) 230, 266, 394
BstC8I GCNNGC 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 54
BstEII GGTNACC 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 63, 168
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 176, 374
BstKTI GATC 3 cut(s) 403, 586, 625
BstMAI GTCTC 2 cut(s) 3, 85
BstMBI GATC 3 cut(s) 400, 583, 622
BstMWI GCNNNNNNNGC 4 cut(s) 173, 194, 301, 473
BstNSI RCATGY 2 cut(s) 425, 541
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 6 cut(s) 34, 162, 191, 192, 203, 236
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 451, 493
BstV2I GAAGAC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 167, 197, 208
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 63, 168
Cac8I GCNNGC 1 cut(s) 539
CfoI GCGC 2 cut(s) 176, 374
Cfr10I RCCGGY 2 cut(s) 22, 443
Cfr13I GGNCC 5 cut(s) 32, 112, 165, 195, 207
Cfr9I CCCGGG 1 cut(s) 192
CviAII CATG 3 cut(s) 422, 436, 538
DpnI GATC 3 cut(s) 402, 585, 624
DpnII GATC 3 cut(s) 400, 583, 622
Eam1104I CTCTTC 3 cut(s) 230, 266, 394
EarI CTCTTC 3 cut(s) 230, 266, 394
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 108
Eco32I GATATC 2 cut(s) 48, 315
Eco47I GGWCC 2 cut(s) 32, 112
Eco57I CTGAAG 2 cut(s) 305, 317
Eco88I CYCGRG 1 cut(s) 192
Eco91I GGTNACC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 430
EcoRV GATATC 2 cut(s) 48, 315
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 3 cut(s) 425, 439, 541
FaiI YATR 8 cut(s) 331, 333, 353, 423, 437, 462, 539, 563
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 421, 435, 537
FauI CCCGC 1 cut(s) 584
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 465, 507
FokI GGATG 2 cut(s) 50, 155
Fsp4HI GCNGC 2 cut(s) 465, 507
GlaI GCGC 2 cut(s) 175, 373
GluI GCNGC 2 cut(s) 465, 507
GsuI CTGGAG 3 cut(s) 101, 326, 531
HaeIII GGCC 3 cut(s) 167, 197, 208
HhaI GCGC 2 cut(s) 176, 374
Hin1II CATG 3 cut(s) 425, 439, 541
Hin6I GCGC 2 cut(s) 174, 372
HinP1I GCGC 2 cut(s) 174, 372
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 1 cut(s) 11
HphI GGTGA 3 cut(s) 55, 241, 442
Hpy166II GTNNAC 2 cut(s) 419, 441
Hpy188I TCNGA 3 cut(s) 319, 363, 473
Hpy8I GTNNAC 2 cut(s) 419, 441
HpyAV CCTTC 4 cut(s) 82, 280, 340, 613
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4V TGCA 3 cut(s) 329, 335, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 194, 301, 473
Hsp92II CATG 3 cut(s) 425, 439, 541
HspAI GCGC 2 cut(s) 174, 372
Kzo9I GATC 3 cut(s) 400, 583, 622
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 280, 379
Lsp1109I GCAGC 2 cut(s) 451, 493
MaeIII GTNAC 1 cut(s) 430
MalI GATC 3 cut(s) 402, 585, 624
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 400, 583, 622
MboII GAAGA 7 cut(s) 217, 238, 283, 310, 381, 588, 591
MfeI CAATTG 2 cut(s) 212, 404
MluCI AATT 3 cut(s) 212, 404, 564
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 436
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 536
MspR9I CCNGG 6 cut(s) 36, 164, 193, 194, 205, 238
MunI CAATTG 2 cut(s) 212, 404
Mva1269I GAATGC 4 cut(s) 331, 467, 508, 516
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 4 cut(s) 173, 194, 301, 473
NciI CCSGG 6 cut(s) 36, 164, 193, 194, 205, 238
NdeI CATATG 1 cut(s) 331
NdeII GATC 3 cut(s) 400, 583, 622
NlaIII CATG 3 cut(s) 425, 439, 541
NlaIV GGNNCC 6 cut(s) 21, 34, 60, 209, 235, 381
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 425, 541
PaeI GCATGC 1 cut(s) 541
PciI ACATGT 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 230
PctI GAATGC 4 cut(s) 331, 467, 508, 516
PkrI GCNGC 2 cut(s) 466, 508
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PpuMI RGGWCCY 1 cut(s) 112
PscI ACATGT 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 112
PspEI GGTNACC 1 cut(s) 430
PspN4I GGNNCC 6 cut(s) 21, 34, 60, 209, 235, 381
PspPI GGNCC 5 cut(s) 32, 112, 165, 195, 207
PspPPI RGGWCCY 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 465, 507
Sau3AI GATC 3 cut(s) 400, 583, 622
Sau96I GGNCC 5 cut(s) 32, 112, 165, 195, 207
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 6 cut(s) 36, 164, 193, 194, 205, 238
SetI ASST 9 cut(s) 105, 117, 138, 225, 285, 306, 342, 574, 615
SinI GGWCC 2 cut(s) 32, 112
SmaI CCCGGG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 536
SphI GCATGC 1 cut(s) 541
Sse9I AATT 3 cut(s) 212, 404, 564
SsiI CCGC 5 cut(s) 6, 84, 126, 172, 577
StyD4I CCNGG 6 cut(s) 34, 162, 191, 192, 203, 236
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 50, 608
TasI AATT 3 cut(s) 212, 404, 564
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 464, 506
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 515, 550
TspMI CCCGGG 1 cut(s) 192
VpaK11BI GGWCC 2 cut(s) 32, 112
XagI CCTNNNNNAGG 1 cut(s) 107
XceI RCATGY 2 cut(s) 425, 541
XmaI CCCGGG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.