RLG00000036656

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000267
Physical Location & Seq
Forward (+)
83003062 .. 83008654
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036656

Sequence Viewer

Length: 684 bp
ATGATTGGATCCGATCTTGTTCGGATCGTCGTCGTTGGCATTGGAATCGGAGCCGTAGGGGTCGGAATTGAACGGCGACAATGTCGGTTTGCGATTTTGCTGTTGGTGTTTGATTCTGAGGATGAGCTTGTGCTTCTTCTTGGCGCGCTCGTCGTCGTCGTCAGGCAGAGGAGGAGGAGGGGCGTTAGGGTTGCCGTTGCTGCGAGTGGCTGGACGGGAGGGGGCGGCGACTCTAGGGTTGAGGAAATGGGGGTGTTGATGCTGCTGGAGGAAGTGCTTCTGGAGGAAACGAGCCAGCTTCACATTCTTGGGTGCCCAGATCAATTTTTGGGTTTTAGATCAAGGAAAAGTTGTGGAATGAGAAAAGAGAAATCAATGAAGGCCCTCAATCTGTCGAAGACGGTCGGACAAGCGGAGGTGTGCCTCCTTGGTCATTTCTGTTTTGCGCAAAGGCGAAGGCTCCGAGCAAGAGCAGAGTGGCGGAGGGTTTCTGATGTTCGATGTGGTCGATCTCAGTTCTCAGGGCGGACGATTGGCGCTGTTGCCTCTGTGATGGGGTTGAGCAAAGTTGACGGAGGTCGTGGTGATCAATCTGGTATTGGATCTGATTTTGTCGCGAATGTCGCGAAATCGGCGTCCACGGCGATTCGCTGGCGAAGTCATTTGGCTGTCCAGAAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.69

Weight (kDa)

10.72

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 312
AccII CGCG 3 cut(s) 146, 617, 626
AciI CCGC 4 cut(s) 225, 413, 481, 526
AclWI GGATC 4 cut(s) 3, 16, 32, 610
AcyI GRCGYC 1 cut(s) 635
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 127, 298
AluI AGCT 2 cut(s) 127, 298
AlwI GGATC 4 cut(s) 3, 16, 32, 610
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 200, 262
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 4 cut(s) 146, 148, 448, 539
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 317
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 187, 249
BccI CCATC 1 cut(s) 547
BceAI ACGGC 4 cut(s) 38, 89, 179, 657
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BclI TGATCA 1 cut(s) 586
BfaI CTAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 540
BisI GCNGC 3 cut(s) 201, 226, 263
BlsI GCNGC 3 cut(s) 202, 227, 264
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 4 cut(s) 10, 52, 314, 461
BmsI GCATC 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 2 cut(s) 287, 302
BsaHI GRCGYC 1 cut(s) 635
BsaJI CCNNGG 2 cut(s) 427, 639
BseDI CCNNGG 2 cut(s) 427, 639
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 108, 527, 534
BsePI GCGCGC 1 cut(s) 144
BseRI GAGGAG 3 cut(s) 184, 187, 190
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 2 cut(s) 187, 249
Bsh1236I CGCG 3 cut(s) 146, 617, 626
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 405
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
Bsp68I TCGCGA 2 cut(s) 617, 626
BspACI CCGC 4 cut(s) 225, 413, 481, 526
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 109, 526, 533
BspFNI CGCG 3 cut(s) 146, 617, 626
BspLI GGNNCC 4 cut(s) 10, 52, 314, 461
BspPI GGATC 4 cut(s) 3, 16, 32, 610
BspT107I GGYRCC 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 427, 639
BssHII GCGCGC 1 cut(s) 144
BssMI GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
BssNI GRCGYC 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 146, 296, 653
BstDEI CTNAG 3 cut(s) 117, 513, 520
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 3 cut(s) 146, 617, 626
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 4 cut(s) 146, 148, 448, 539
BstKTI GATC 8 cut(s) 11, 16, 27, 322, 341, 512, 589, 605
BstMBI GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 4 cut(s) 200, 623, 632, 641
BstPAI GACNNNNGTC 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 317
BstUI CGCG 3 cut(s) 146, 617, 626
BstV1I GCAGC 2 cut(s) 187, 249
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 8, 602
BstYI RGATCY 2 cut(s) 8, 602
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 1 cut(s) 127
BtuMI TCGCGA 2 cut(s) 617, 626
Cac8I GCNNGC 3 cut(s) 146, 296, 653
CfoI GCGC 4 cut(s) 146, 148, 448, 539
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 1 cut(s) 624
CviJI RGCY 8 cut(s) 53, 127, 210, 294, 298, 383, 460, 668
CviKI_1 RGCY 8 cut(s) 53, 127, 210, 294, 298, 383, 460, 668
DdeI CTNAG 3 cut(s) 117, 513, 520
DpnI GATC 8 cut(s) 10, 15, 26, 321, 340, 511, 588, 604
DpnII GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
EciI GGCGGA 2 cut(s) 496, 541
Eco130I CCWWGG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 3 cut(s) 201, 226, 263
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 201, 226, 263
FspBI CTAG 1 cut(s) 234
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 4 cut(s) 145, 147, 447, 538
GluI GCNGC 3 cut(s) 201, 226, 263
GsuI CTGGAG 2 cut(s) 287, 302
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 1 cut(s) 383
HgaI GACGC 1 cut(s) 624
HhaI GCGC 4 cut(s) 146, 148, 448, 539
Hin1I GRCGYC 1 cut(s) 635
Hin6I GCGC 4 cut(s) 144, 146, 446, 537
HinP1I GCGC 4 cut(s) 144, 146, 446, 537
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 4 cut(s) 45, 113, 230, 646
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 571, 639
Hpy188I TCNGA 9 cut(s) 13, 24, 50, 65, 118, 407, 464, 493, 607
Hpy188III TCNNGA 4 cut(s) 281, 616, 625, 673
Hpy8I GTNNAC 2 cut(s) 571, 639
Hpy99I CGWCG 5 cut(s) 32, 35, 155, 158, 161
HpyAV CCTTC 2 cut(s) 373, 450
HpyCH4III ACNGT 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 623, 632, 641
HpyF3I CTNAG 3 cut(s) 117, 513, 520
Hsp92I GRCGYC 1 cut(s) 635
HspAI GCGC 4 cut(s) 144, 146, 446, 537
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
LmnI GCTCC 2 cut(s) 50, 465
LpnPI CCDG 9 cut(s) 148, 196, 251, 266, 308, 330, 507, 579, 637
Lsp1109I GCAGC 2 cut(s) 187, 249
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 234
MalI GATC 8 cut(s) 10, 15, 26, 321, 340, 511, 588, 604
MboI GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
MboII GAAGA 2 cut(s) 128, 409
MflI RGATCY 2 cut(s) 8, 602
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 66, 323
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 43, 385
MroXI GAANNNNTTC 1 cut(s) 276
MvnI CGCG 3 cut(s) 146, 617, 626
MwoI GCNNNNNNNGC 4 cut(s) 200, 623, 632, 641
NdeII GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
NlaIV GGNNCC 4 cut(s) 10, 52, 314, 461
NruI TCGCGA 2 cut(s) 617, 626
NsbI TGCGCA 1 cut(s) 447
PauI GCGCGC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 505
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 45, 113, 646
PflFI GACNNNGTC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 202, 227, 264
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 576
PspN4I GGNNCC 4 cut(s) 10, 52, 314, 461
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 2 cut(s) 8, 602
PsyI GACNNNGTC 1 cut(s) 81
PteI GCGCGC 1 cut(s) 144
RruI TCGCGA 2 cut(s) 617, 626
SatI GCNGC 3 cut(s) 201, 226, 263
Sau3AI GATC 8 cut(s) 8, 13, 24, 319, 338, 509, 586, 602
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 317
SetI ASST 4 cut(s) 129, 300, 420, 580
SfaNI GCATC 1 cut(s) 249
Sse9I AATT 2 cut(s) 66, 323
SsiI CCGC 4 cut(s) 225, 413, 481, 526
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 3 cut(s) 395, 499, 508
TasI AATT 2 cut(s) 66, 323
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 3 cut(s) 45, 113, 646
TseI GCWGC 2 cut(s) 200, 262
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 588
Tth111I GACNNNGTC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.