Rorug07G0137600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000267
Physical Location & Seq
Reverse (-)
10855510 .. 10858503
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0137600.1

Sequence Viewer

Length: 708 bp
ATGAGCTCTCAGCTTTTCAGATCCGCTTCCAGAGCTGCCAGGTCCTTCCTCTCTGCTCCCAAGACCTCTCGCTTCTTCTCCGAAGGACAAGCTGTAGCTACTGCAGCAGCAGTAACCTTACGTGGAAAGGTGCCTGCCTTTGCTTCCAATTTTGGAAGAGCTGGTTCTGAAAATGCATCTTGGATTTCAGCAGCCCTCGCTGTTCCTGCTGCAGCTTACATGCTCCTAGACCAGGAGGTTCATGCTGCAGAGTATGAGCGCACTTTCATTGCTATCAAGCCTGATGGAGTTCAAAGAGGACTGATTTCAGAAATCATAGCTCGATTTGAGAGGAAGGGTTTCAAACTTGTAGGCATTAAAGTAGTTGTTCCTTCAAAGGATTTCGCACAGAAGCATTATCATGATCTAAAGGAAAGACCATTTTTCAGTGGCCTTTGCGACTTCCTTAGCTCTGGACCTGTGATTGCTATGGTCTGGGAAGGAGAAGGAGTGATCAAGTATGGCCGTAAACTCATTGGAGCTACAGACCCACAAAAATCAGAACCAGGAACTATCAGAGGTGATCTGGCTGTTGTTGTTGGGAGAAATATCATTCACGGTAGTGATGGTCCGGAGACTGCTAAAGACGAAATCAACCTGTGGTTTAAACCAAATGAGTTGGTTAGCTACACCAGCAATTCAGAGAAGTGGGTGTATGGAGTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.59

Weight (kDa)

9.27

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 86 - 219 1.7e-54 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 3 cut(s) 293, 343, 375
AjnI CCWGG 3 cut(s) 38, 231, 544
AleI CACNNNNGTG 1 cut(s) 600
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 610
AoxI GGCC 2 cut(s) 430, 502
ApeKI GCWGC 7 cut(s) 35, 104, 107, 191, 209, 212, 245
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 42, 455, 608
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 3 cut(s) 42, 455, 608
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 7 cut(s) 22, 116, 119, 196, 203, 224, 232
BccI CCATC 2 cut(s) 278, 599
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 3 cut(s) 40, 233, 546
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 227, 706
BfmI CTRYAG 5 cut(s) 93, 102, 210, 246, 522
BisI GCNGC 7 cut(s) 36, 105, 108, 192, 210, 213, 246
BlsI GCNGC 7 cut(s) 37, 106, 109, 193, 211, 214, 247
Bme1390I CCNGG 3 cut(s) 40, 233, 546
Bme18I GGWCC 3 cut(s) 42, 455, 608
BmgT120I GGNCC 3 cut(s) 42, 455, 608
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 3 cut(s) 40, 233, 546
BmsI GCATC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 3 cut(s) 40, 233, 546
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 7 cut(s) 22, 116, 119, 196, 203, 224, 232
BshFI GGCC 2 cut(s) 432, 504
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 608
BsnI GGCC 2 cut(s) 432, 504
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 4 cut(s) 20, 403, 492, 562
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 432, 504
BspCNI CTCAG 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 610
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 3 cut(s) 106, 214, 250
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 267
BssMI GATC 4 cut(s) 20, 403, 492, 562
Bst2UI CCWGG 3 cut(s) 40, 233, 546
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 9, 446
BstENI CCTNNNNNAGG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 4 cut(s) 23, 406, 495, 565
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 4 cut(s) 20, 403, 492, 562
BstMWI GCNNNNNNNGC 5 cut(s) 32, 104, 197, 206, 672
BstNI CCWGG 3 cut(s) 40, 233, 546
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 3 cut(s) 38, 231, 544
BstSFI CTRYAG 5 cut(s) 93, 102, 210, 246, 522
BstV1I GCAGC 7 cut(s) 22, 116, 119, 196, 203, 224, 232
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 432, 504
BtsIMutI CAGTG 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 42, 455, 608
CviAII CATG 3 cut(s) 220, 242, 401
DdeI CTNAG 2 cut(s) 9, 446
DpnI GATC 4 cut(s) 22, 405, 494, 564
DpnII GATC 4 cut(s) 20, 403, 492, 562
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 42, 455, 608
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 3 cut(s) 38, 231, 544
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 223, 245, 404
FaiI YATR 8 cut(s) 221, 243, 255, 317, 402, 470, 501, 696
FatI CATG 3 cut(s) 219, 241, 400
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 7 cut(s) 36, 105, 108, 192, 210, 213, 246
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 7 cut(s) 36, 105, 108, 192, 210, 213, 246
FspBI CTAG 2 cut(s) 227, 706
GlaI GCGC 1 cut(s) 260
GluI GCNGC 7 cut(s) 36, 105, 108, 192, 210, 213, 246
HaeIII GGCC 2 cut(s) 432, 504
HapII CCGG 1 cut(s) 611
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 223, 245, 404
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 1 cut(s) 699
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 509, 703
Hpy188I TCNGA 7 cut(s) 20, 82, 169, 310, 541, 557, 682
Hpy188III TCNNGA 4 cut(s) 30, 401, 453, 611
Hpy8I GTNNAC 2 cut(s) 509, 703
HpyAV CCTTC 6 cut(s) 55, 77, 328, 381, 473, 479
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 104, 176, 212, 248
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 104, 197, 206, 672
HpyF3I CTNAG 2 cut(s) 9, 446
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 223, 245, 404
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 610
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 20, 403, 492, 562
LguI GCTCTTC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 61, 228, 518
Lsp1109I GCAGC 7 cut(s) 22, 116, 119, 196, 203, 224, 232
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 227, 706
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 22, 405, 494, 564
MboI GATC 4 cut(s) 20, 403, 492, 562
MboII GAAGA 2 cut(s) 67, 168
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 148, 676
MlyI GAGTC 1 cut(s) 708
MnlI CCTC 7 cut(s) 59, 76, 206, 229, 290, 324, 551
Mph1103I ATGCAT 1 cut(s) 178
MroI TCCGGA 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 2 cut(s) 357, 645
MslI CAYNNNNRTG 2 cut(s) 399, 600
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 3 cut(s) 40, 233, 546
MssI GTTTAAAC 1 cut(s) 646
MvaI CCWGG 3 cut(s) 40, 233, 546
MwoI GCNNNNNNNGC 5 cut(s) 32, 104, 197, 206, 672
NdeII GATC 4 cut(s) 20, 403, 492, 562
NlaIII CATG 3 cut(s) 223, 245, 404
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 600
PagI TCATGA 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 7 cut(s) 37, 106, 109, 193, 211, 214, 247
PleI GAGTC 1 cut(s) 707
PmeI GTTTAAAC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 707
Ppu21I YACGTR 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 3 cut(s) 38, 231, 544
PspGI CCWGG 3 cut(s) 38, 231, 544
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 42, 455, 608
PspPPI RGGWCCY 1 cut(s) 42
PstI CTGCAG 3 cut(s) 106, 214, 250
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 399, 600
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 357, 645
SatI GCNGC 7 cut(s) 36, 105, 108, 192, 210, 213, 246
Sau3AI GATC 4 cut(s) 20, 403, 492, 562
Sau96I GGNCC 3 cut(s) 42, 455, 608
SchI GAGTC 1 cut(s) 708
ScrFI CCNGG 3 cut(s) 40, 233, 546
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 5 cut(s) 93, 102, 210, 246, 522
SinI GGWCC 3 cut(s) 42, 455, 608
SmiMI CAYNNNNRTG 2 cut(s) 399, 600
Sse9I AATT 2 cut(s) 148, 676
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 227, 706
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 38, 231, 544
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 322
TasI AATT 2 cut(s) 148, 676
Tru1I TTAA 2 cut(s) 357, 645
Tru9I TTAA 2 cut(s) 357, 645
TscAI CASTG 1 cut(s) 433
TseI GCWGC 7 cut(s) 35, 104, 107, 191, 209, 212, 245
TspDTI ATGAA 2 cut(s) 230, 256
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 3 cut(s) 42, 455, 608
XagI CCTNNNNNAGG 1 cut(s) 230
XceI RCATGY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 2 cut(s) 227, 706
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.