RchiOBHm_Chr1g0330531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
20278952 .. 20279368
417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55971

Sequence Viewer

Length: 297 bp
ATGAAACTTAGTGTCACCGAAATTGTTTTTCGGTGGCAACATAGTGGGAAAGCTGATAGAAATAGTAAATTATGGCTCCGCGTGTGCAAAATCTTTCTGGTATGTCACCACCTTTGTAAAGCGAATAGAGTAGCCAATGATGCACTCTTCGCTAATTGGTGCTCGTTAGAATACATATTTTCTGTAGAGACTCTCGTTATGATCTCGGGCTGTTCTCTTCATGCTTATTGTAATCTGGGGTTTAGGTATCATGTCCCCCCCATGTATTCTGAGGTTTCATTAATGGTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.33

Weight (kDa)

9.02

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 79
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 205
AseI ATTAAT 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 7, 98
AvaI CYCGRG 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 130
BseMII CTCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 77
BssMI GATC 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 152, 222
BstDEI CTNAG 2 cut(s) 8, 270
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 140, 149
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 81
CviAII CATG 3 cut(s) 221, 251, 262
CviJI RGCY 5 cut(s) 53, 76, 134, 210, 293
CviKI_1 RGCY 5 cut(s) 53, 76, 134, 210, 293
DdeI CTNAG 2 cut(s) 8, 270
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 152, 222
EarI CTCTTC 2 cut(s) 152, 222
Eco88I CYCGRG 1 cut(s) 205
FaeI CATG 3 cut(s) 224, 254, 265
FaiI YATR 8 cut(s) 42, 73, 103, 176, 200, 222, 252, 263
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 220, 250, 261
Hin1II CATG 3 cut(s) 224, 254, 265
HinfI GANTC 1 cut(s) 190
HphI GGTGA 2 cut(s) 7, 98
Hpy188I TCNGA 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 87, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 149
HpyF3I CTNAG 2 cut(s) 8, 270
Hsp92II CATG 3 cut(s) 224, 254, 265
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 83, 221
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 2 cut(s) 13, 104
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 2 cut(s) 139, 209
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 3 cut(s) 21, 68, 154
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 1 cut(s) 265
MseI TTAA 1 cut(s) 281
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 140, 149
NdeII GATC 1 cut(s) 201
NlaIII CATG 3 cut(s) 224, 254, 265
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 13, 104
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 1 cut(s) 201
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 55, 114, 248, 276
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 21, 68, 154
SsiI CCGC 1 cut(s) 79
TasI AATT 3 cut(s) 21, 68, 154
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 2 cut(s) 13, 104
Tsp45I GTSAC 2 cut(s) 13, 104
TspDTI ATGAA 3 cut(s) 17, 209, 267
VspI ATTAAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.