Rorug07G0310400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000267
Physical Location & Seq
Reverse (-)
31076390 .. 31091950
15561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0310400.1

Sequence Viewer

Length: 1056 bp
ATGGAAAAGATTGAGCATAAGTATGTGGAGGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGCGGTGGTTTTCCTGCATGGATTTCCAGAAATATGGTACTCATGGAGGCACCAAATGATTGCTGTGGCCAACAATGGCTATCGGGCGATTGCCTATGATTGTAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCTGAAAAGGCAACTTTCAAGGACCTCGTTGATGAGGTTGTTGGAGTTTTGGATGCTTTGGCAATTGACAAGGCTTTCCTTGTTGCAAAGGATTTTGGATCTATAACTGAATACCTCGTAGCTGCTGTCTATCCTGAGCGGGTAGCTGGTGTTATATCACTAGGTATCCCTTTCATGCTTCCAGGTCCCACTGCTGTCCAAAATCATCTTCTTCCTGAAGGATTCTACATATCAAGGTGGCAGGAGCCAGGGAGGGCAGAAGCATATTTTGGCCGCTTTGATATCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTATCGCCAGGTTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCTGTATGAGAAGTCTGGATTCCGTTTTCCTTTGAGAGTTCCATATAGGAGCATAACAGTGGATTGTGGTTATACTGATCCAAAAGTCTCAGCTCCAACACTGCTTATCCAGGGTGAGAAAGACTACCTCTTAAATTTTCCCGGGACTGAGGATTACATACGATCTGGGGCAATGAAACATGTTGTGCCTGATTTGGACATTACCTTCATTGCAGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTAATCCTCACTTTTCTCAGCAAACATGCCCTCTCCACTGAAGCCGAGCAACATTTACGTGAAGAATATGAATGTCACTTGCAACTTCAAGTCTGCATTGACATCTCTGTGCAGCTCTGCAGTCCCTCTACAGAAAATGCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.18

Weight (kDa)

4.93

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 26 - 126 9.6e-09 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 27 - 257 2.2e-20 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 28 - 302 8.6e-13 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 352
AciI CCGC 3 cut(s) 80, 352, 487
AclWI GGATC 4 cut(s) 319, 570, 581, 716
AcoI YGGCCR 2 cut(s) 144, 484
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 2 cut(s) 450, 966
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 2 cut(s) 232, 995
AjnI CCWGG 4 cut(s) 394, 460, 607, 753
AjuI GAANNNNNNNTTGG 4 cut(s) 405, 437, 465, 497
Alw26I GTCTC 1 cut(s) 736
AlwI GGATC 4 cut(s) 319, 570, 581, 716
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 2 cut(s) 144, 484
ApeKI GCWGC 4 cut(s) 202, 335, 554, 1018
ApoI RAATTY 1 cut(s) 778
AseI ATTAAT 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 885
AspS9I GGNCC 3 cut(s) 71, 235, 398
AsuC2I CCSGG 2 cut(s) 786, 787
AsuHPI GGTGA 1 cut(s) 770
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 3 cut(s) 71, 235, 398
BalI TGGCCA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 189, 322, 541, 1030
BciT130I CCWGG 4 cut(s) 396, 462, 609, 755
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 2 cut(s) 786, 787
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 2 cut(s) 1024, 1035
BfuAI ACCTGC 1 cut(s) 1037
BfuI GTATCC 1 cut(s) 389
BglII AGATCT 1 cut(s) 625
BisI GCNGC 5 cut(s) 203, 336, 487, 555, 1019
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 5 cut(s) 204, 337, 488, 556, 1020
Bme1390I CCNGG 6 cut(s) 396, 462, 609, 755, 786, 787
Bme18I GGWCC 3 cut(s) 71, 235, 398
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 71, 235, 398
BmiI GGNNCC 4 cut(s) 128, 400, 459, 546
BmrFI CCNGG 6 cut(s) 396, 462, 609, 755, 786, 787
BmsI GCATC 2 cut(s) 256, 650
BpmI CTGGAG 1 cut(s) 517
Bpu10I CCTNAGC 2 cut(s) 348, 558
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 786, 787
BsaAI YACGTR 1 cut(s) 965
BsaJI CCNNGG 3 cut(s) 461, 754, 785
Bse3DI GCAATG 2 cut(s) 822, 852
BseBI CCWGG 4 cut(s) 396, 462, 609, 755
BseDI CCNNGG 3 cut(s) 461, 754, 785
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 2 cut(s) 822, 852
BseMII CTCAG 7 cut(s) 189, 201, 339, 630, 747, 783, 937
BseXI GCAGC 4 cut(s) 189, 322, 541, 1030
BsgI GTGCAG 1 cut(s) 1037
BshFI GGCC 2 cut(s) 146, 486
BshNI GGYRCC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 3 cut(s) 384, 802, 1014
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 3 cut(s) 384, 802, 1014
BsnI GGCC 2 cut(s) 146, 486
BsoBI CYCGRG 1 cut(s) 785
Bsp143I GATC 6 cut(s) 311, 562, 586, 625, 721, 806
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 80, 352, 487
BspANI GGCC 2 cut(s) 146, 486
BspCNI CTCAG 7 cut(s) 190, 202, 340, 629, 746, 784, 936
BspLI GGNNCC 4 cut(s) 128, 400, 459, 546
BspMAI CTGCAG 1 cut(s) 1028
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 4 cut(s) 319, 570, 581, 716
BspT107I GGYRCC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 822, 852
BssECI CCNNGG 3 cut(s) 461, 754, 785
BssMI GATC 6 cut(s) 311, 562, 586, 625, 721, 806
Bst2UI CCWGG 4 cut(s) 396, 462, 609, 755
Bst4CI ACNGT 1 cut(s) 703
Bst6I CTCTTC 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 8 cut(s) 198, 210, 348, 558, 616, 733, 792, 923
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 6 cut(s) 314, 565, 589, 628, 724, 809
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 6 cut(s) 311, 562, 586, 625, 721, 806
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 4 cut(s) 396, 462, 609, 755
BstNSI RCATGY 2 cut(s) 827, 935
BstSCI CCNGG 6 cut(s) 394, 460, 607, 753, 784, 785
BstSFI CTRYAG 2 cut(s) 1024, 1035
BstV1I GCAGC 4 cut(s) 189, 322, 541, 1030
BstX2I RGATCY 2 cut(s) 311, 625
BstXI CCANNNNNNTGG 1 cut(s) 111
BstYI RGATCY 2 cut(s) 311, 625
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 146, 486
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 2 cut(s) 402, 743
BtsIMutI CAGTG 4 cut(s) 402, 708, 743, 942
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 71, 235, 398
Cfr9I CCCGGG 1 cut(s) 785
Csp6I GTAC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviAII CATG 7 cut(s) 50, 95, 120, 388, 574, 824, 932
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 8 cut(s) 198, 210, 348, 558, 616, 733, 792, 923
DpnI GATC 6 cut(s) 313, 564, 588, 627, 723, 808
DpnII GATC 6 cut(s) 311, 562, 586, 625, 721, 806
DraIII CACNNNGTG 1 cut(s) 874
EaeI YGGCCR 2 cut(s) 144, 484
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 3 cut(s) 71, 235, 398
Eco57I CTGAAG 2 cut(s) 450, 966
Eco88I CYCGRG 1 cut(s) 785
EcoO109I RGGNCCY 2 cut(s) 235, 398
EcoRII CCWGG 4 cut(s) 394, 460, 607, 753
EcoRV GATATC 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 643
FaeI CATG 7 cut(s) 53, 98, 123, 391, 577, 827, 935
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 3 cut(s) 384, 802, 1014
FatI CATG 7 cut(s) 49, 94, 119, 387, 573, 823, 931
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 203, 336, 487, 555, 1019
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 5 cut(s) 203, 336, 487, 555, 1019
FspBI CTAG 1 cut(s) 374
GluI GCNGC 5 cut(s) 203, 336, 487, 555, 1019
GsuI CTGGAG 1 cut(s) 517
HaeIII GGCC 2 cut(s) 146, 486
HapII CCGG 1 cut(s) 786
Hin1II CATG 7 cut(s) 53, 98, 123, 391, 577, 827, 935
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 435, 663
HpaII CCGG 1 cut(s) 786
HphI GGTGA 1 cut(s) 770
Hpy188I TCNGA 2 cut(s) 199, 619
Hpy188III TCNNGA 8 cut(s) 104, 347, 428, 534, 566, 660, 890, 1053
HpyAV CCTTC 3 cut(s) 425, 854, 859
HpyCH4III ACNGT 1 cut(s) 703
HpyCH4IV ACGT 1 cut(s) 964
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 8 cut(s) 198, 210, 348, 558, 616, 733, 792, 923
HpySE526I ACGT 1 cut(s) 964
Hsp92II CATG 7 cut(s) 53, 98, 123, 391, 577, 827, 935
Kzo9I GATC 6 cut(s) 311, 562, 586, 625, 721, 806
LmnI GCTCC 3 cut(s) 457, 693, 742
Lsp1109I GCAGC 4 cut(s) 189, 322, 541, 1030
LweI GCATC 2 cut(s) 256, 650
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 2 cut(s) 866, 980
MalI GATC 6 cut(s) 313, 564, 588, 627, 723, 808
MbiI CCGCTC 1 cut(s) 352
MboI GATC 6 cut(s) 311, 562, 586, 625, 721, 806
MboII GAAGA 5 cut(s) 413, 416, 520, 635, 980
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 2 cut(s) 311, 625
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 4 cut(s) 60, 276, 778, 897
MluNI TGGCCA 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 235, 764
Mox20I TGGCCA 1 cut(s) 146
Mph1103I ATGCAT 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 885
MscI TGGCCA 1 cut(s) 146
MseI TTAA 2 cut(s) 776, 900
MslI CAYNNNNRTG 4 cut(s) 21, 701, 963, 1013
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 6 cut(s) 396, 462, 609, 755, 786, 787
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 4 cut(s) 396, 462, 609, 755
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 2 cut(s) 786, 787
NdeII GATC 6 cut(s) 311, 562, 586, 625, 721, 806
NlaIII CATG 7 cut(s) 53, 98, 123, 391, 577, 827, 935
NlaIV GGNNCC 4 cut(s) 128, 400, 459, 546
NmeAIII GCCGAG 1 cut(s) 976
NmuCI GTSAC 2 cut(s) 866, 980
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 2 cut(s) 827, 935
PciI ACATGT 1 cut(s) 823
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 2 cut(s) 435, 663
PkrI GCNGC 5 cut(s) 204, 337, 488, 556, 1020
Ppu21I YACGTR 1 cut(s) 965
PpuMI RGGWCCY 2 cut(s) 235, 398
PscI ACATGT 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 900
Psp5II RGGWCCY 2 cut(s) 235, 398
Psp6I CCWGG 4 cut(s) 394, 460, 607, 753
PspGI CCWGG 4 cut(s) 394, 460, 607, 753
PspN4I GGNNCC 4 cut(s) 128, 400, 459, 546
PspPI GGNCC 3 cut(s) 71, 235, 398
PspPPI RGGWCCY 2 cut(s) 235, 398
PstI CTGCAG 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 311, 625
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 4 cut(s) 21, 701, 963, 1013
SaqAI TTAA 2 cut(s) 776, 900
SatI GCNGC 5 cut(s) 203, 336, 487, 555, 1019
Sau3AI GATC 6 cut(s) 311, 562, 586, 625, 721, 806
Sau96I GGNCC 3 cut(s) 71, 235, 398
ScrFI CCNGG 6 cut(s) 396, 462, 609, 755, 786, 787
SfaNI GCATC 2 cut(s) 256, 650
SfcI CTRYAG 2 cut(s) 1024, 1035
SinI GGWCC 3 cut(s) 71, 235, 398
SmaI CCCGGG 1 cut(s) 787
SmiMI CAYNNNNRTG 4 cut(s) 21, 701, 963, 1013
Sse9I AATT 4 cut(s) 60, 276, 778, 897
SsiI CCGC 3 cut(s) 80, 352, 487
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 6 cut(s) 394, 460, 607, 753, 784, 785
TaaI ACNGT 1 cut(s) 703
TaiI ACGT 1 cut(s) 967
TasI AATT 4 cut(s) 60, 276, 778, 897
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 2 cut(s) 435, 663
Tru1I TTAA 2 cut(s) 776, 900
Tru9I TTAA 2 cut(s) 776, 900
TscAI CASTG 4 cut(s) 409, 708, 750, 949
TseFI GTSAC 2 cut(s) 866, 980
TseI GCWGC 4 cut(s) 202, 335, 554, 1018
Tsp45I GTSAC 2 cut(s) 866, 980
TspDTI ATGAA 5 cut(s) 38, 376, 833, 841, 990
TspGWI ACGGA 1 cut(s) 656
TspMI CCCGGG 1 cut(s) 785
TspRI CASTG 4 cut(s) 409, 708, 750, 949
VpaK11BI GGWCC 3 cut(s) 71, 235, 398
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 1 cut(s) 778
XceI RCATGY 2 cut(s) 827, 935
XmaI CCCGGG 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.