Rorug03G0220900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000267
Physical Location & Seq
Forward (+)
20157857 .. 20161155
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0220900.1

Sequence Viewer

Length: 2487 bp
ATGAAAAAGGACCTCTGGTCATTTTTTATATTCACACATAGCCAGATTGCAAATGCCCTGAAAATGCTGTTGAAATCTCTGCTTCTCTTCCTCCTCTTCCAAGTTTGCACTTCCAGGGACACCTTGAGATCGAACGAAGTACTGAAGGATGACGATGGTGGACTTCTGGTGTCCAAAGAAAGCAGCTTTGAGTTGGGTTTCTTCAGTCCTGGAAATTCTAGCAACCGCTATGTTGGGATTTGGTATTCTCAATCTAAAGTATCTGAAAAAACAGTGGTGTGGATCGCAAACAGAGACAACCCCATCAATGACACCTCTGGAGTTTTCACCATAAACAGGTATGGAGAGCTAGTCCTTTATGCTTATAACATGGAGACCAGTCCTATATGGTCTGCAGATGTGTCTCATTCAGTCAAAAACACCAGCACCTTATCTGCATATGTACAGCTTTTGGATACAGGAAACTTAGTTATGTTCCAGAATGATAGAGACGGAATCTTTGTATGGCAAAGTTTTGATTATCCTACAGATACTTTAATCCCTGGTATGAAAGTTGGGATGAATCGGAAAACTGGGCTAGAATGGGTTTTAACATCTTGGAAGTCACAAGATGACCCTGGAACTGGGGACTATACCTTTAGGCTTCATAATTGGAGCCACATTGTCACGCCCCAGTATTTTATTTATAAAGGTTTGTCTAAGTATTGGCGAGGTGATACAGAGCCTTGGCCTAATTCGATCCGAAATGCAGAGGAAATGTCTTTTTTCCTTACCTATAACACCAATAAACTTACAATAATGAAGTTGATGTTTTCTGGGCTACATCAGCATTTGGTATGGAGTGATGCTGACCATCAATGGAAGGAGTTGTGGTCTTCACCGAAATACAGGTGTGACTGGTATGGACATTGTGGTGCCAACAGCAAATGTAGCCTTGACAGTGGTAATCTGTTCGAGTGTGAGTGTCTACCGGGGTATGAACCAAAATCTATAAATGGTTGGAATGGGAGAGATGGGTCAGATGGATGTGTGAGTAAACGAGTCAAAGTGTCAAAGTGTAGAAATGGAGAAGGGTTTGTGAAGGTGGAAAGGGTGAAAGATCCAGACGCATCGAGAGCAGCATTGTTGAAAACAGGTATGACTACCAAAGAGTGTGAGCAGGACTGCCTAAGAAATTGTTCTTGCACGGCATATATGACCAAAAAGCTTGAAGGGGTTATTAATTGCTTGACATGGTATGATGACTTGATGGACATTTTGGTTTACACAGAGGCCGGACGAGATCTGTATGTTCGTGTGGATAAAATTGAGTTAGCTGAGAATGCCGCAAACTCACAAGGATTCTTCAGGAGGGGCATGCTTATTGTTCCAATACTGTTTGCTCTGCTGGCCCTAGTACTAATAAATGTGCTTGCCTGTTGGTTGCTTAAGAAAAAAGGGAAGACAAAAGTCTTTGTGGAGGTGGATGAACTTGAGGAAAGCAAGAGACACCCGGAATTGCAGTTTTTCGATCTGAACACACTAGTAGCAGCCACAGATAATTTCTCTGATGTTAATAAACTTGGCGAAGGTGGTTTTGGTGGTGTTTATAAGGGTGAGTTACCAAATGGACAGAAGGTTGCTGTAAAAAGGCTGTCTAGCAGCTCAGGACAAGGGGTTGGTGAATTCAAAAATGAAGTTGAACTGATAGCAGGACTTCAACACAGGAATCTTGTGAAGCTTTTAGGTTGCTGTATAAAGGGAGGAGAAAGGATGCTAGTCCTCGAATATATGCCGAACAAAAGCTTGGACTCATTTCTTTTTGATGACACAAGAAGGTCCTTCTTAGATTGGGGAAGGCGTTTTGAAATTATCAATGGGGTTGCTCGTGGGCTTTTGTATCTTCACCAAGACTCGAGATTAAGGATTATTCATAGGGATCTAAAAACCAGCAATATTCTTCTAGATGATGAGATGACCCCAAAAATTTCAGATTTCGGCATGGCAAGAATATTCCATGGGGACCAACTTCAGGATAACACAAAGAAAGTTGTTGGAACATATGGCTACATGTCACCAGAGTATGCAGTGTTTGGGAGATTCTCTACGAAATCGGATGTGTTCAGTTTTGGGATTATACTATTGGAGATTGTTAGTGGCAAGAGAAACAATGGTTCTTATGAGGAGAATTACTCCATGAACCTGATAGGACATGTTTGGCATGTGTGGAAAGAAGGAATAGCCTTAGATATTGTGGATTCATCGCTACAATCATATAAGCATGATGAAGTCTTGAGATGCATTCAAGTTGGACTGTTGTGCGTGCAAGAAGATTCCAAGGACCGGCCAGCCATGTCATCCGTTGTGTTCATGTTGAGTGGTGAGGCATCTCTTCCATCTCCTAAGCAGCCTGCATTTGTCTTCAGAAGAAATTCCAGCAGTGCTGCTGATTCAAAAGAATTGCATTCTATTAACGACTTAACAATAACTATTGTGGGAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

828

Amino Acids

93.78

Weight (kDa)

6.65

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 91 - 201 4.1e-35 D-mannose binding lectin
S_locus_glycop PF00954 251 - 330 5.6e-15 S-locus glycoprotein domain
PAN_2 PF08276 353 - 419 2.3e-17 PAN-like domain
Pkinase PF00069 516 - 730 8.6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 519 - 782 1.4e-47 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 788 - 828 6.3e-09 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 366, 687, 1590
AccB1I GGYRCC 1 cut(s) 914
AccI GTMKAC 1 cut(s) 967
AciI CCGC 2 cut(s) 226, 1326
AclWI GGATC 4 cut(s) 290, 733, 1094, 1926
AcoI YGGCCR 1 cut(s) 2324
AcsI RAATTY 4 cut(s) 214, 1664, 1965, 2410
AcuI CTGAAG 5 cut(s) 164, 187, 1330, 1994, 2386
AfaI GTAC 3 cut(s) 141, 444, 1398
AfiI CCNNNNNNNGG 4 cut(s) 336, 623, 2011, 2322
AflII CTTAAG 1 cut(s) 1427
AflIII ACRYGT 2 cut(s) 2049, 2191
AgsI TTSAA 9 cut(s) 73, 1129, 1211, 1669, 1682, 1700, 1847, 2285, 2433
AhdI GACNNNNNGTC 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 1522
AjnI CCWGG 4 cut(s) 113, 208, 541, 616
AjuI GAANNNNNNNTTGG 4 cut(s) 1560, 1592, 1769, 1801
AluBI AGCT 9 cut(s) 186, 349, 448, 1207, 1316, 1644, 1720, 1785, 2480
AluI AGCT 9 cut(s) 186, 349, 448, 1207, 1316, 1644, 1720, 1785, 2480
Alw21I GWGCWC 1 cut(s) 2482
Alw26I GTCTC 5 cut(s) 288, 368, 408, 483, 1480
AlwI GGATC 4 cut(s) 290, 733, 1094, 1926
Ama87I CYCGRG 1 cut(s) 1894
AoxI GGCC 4 cut(s) 728, 1272, 1389, 2324
ApeKI GCWGC 6 cut(s) 183, 1118, 1529, 1641, 2386, 2423
ApoI RAATTY 4 cut(s) 214, 1664, 1965, 2410
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AseI ATTAAT 1 cut(s) 1221
Asp700I GAANNNNTTC 2 cut(s) 1177, 2410
AspS9I GGNCC 5 cut(s) 10, 1390, 1818, 2002, 2320
AsuC2I CCSGG 2 cut(s) 972, 1493
AsuHPI GGTGA 9 cut(s) 319, 725, 870, 1105, 1607, 1673, 1877, 2046, 2372
AvaI CYCGRG 1 cut(s) 1894
AvaII GGWCC 4 cut(s) 10, 1818, 2002, 2320
BanI GGYRCC 1 cut(s) 914
BanII GRGCYC 1 cut(s) 2482
BauI CACGAG 1 cut(s) 1866
BbsI GAAGAC 3 cut(s) 867, 1448, 2392
Bbv12I GWGCWC 1 cut(s) 2482
BbvI GCAGC 6 cut(s) 195, 1130, 1541, 1653, 2398, 2410
BccI CCATC 7 cut(s) 149, 311, 861, 1007, 1016, 1243, 2383
BceAI ACGGC 1 cut(s) 1203
BciT130I CCWGG 4 cut(s) 115, 210, 543, 618
BciVI GTATCC 1 cut(s) 448
BcnI CCSGG 2 cut(s) 972, 1493
BcoDI GTCTC 5 cut(s) 288, 368, 408, 483, 1480
BcuI ACTAGT 1 cut(s) 1522
BfaI CTAG 8 cut(s) 219, 350, 578, 1394, 1523, 1638, 1757, 1943
BfmI CTRYAG 2 cut(s) 393, 525
BfrI CTTAAG 1 cut(s) 1427
BfuI GTATCC 1 cut(s) 448
BglII AGATCT 1 cut(s) 1282
BisI GCNGC 7 cut(s) 184, 1119, 1326, 1530, 1642, 2387, 2424
BlsI GCNGC 7 cut(s) 185, 1120, 1327, 1531, 1643, 2388, 2425
BmcAI AGTACT 2 cut(s) 141, 1398
Bme1390I CCNGG 6 cut(s) 115, 210, 543, 618, 972, 1493
Bme18I GGWCC 4 cut(s) 10, 1818, 2002, 2320
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 1894
BmgT120I GGNCC 5 cut(s) 10, 1390, 1818, 2002, 2320
BmiI GGNNCC 3 cut(s) 656, 916, 2003
BmrFI CCNGG 6 cut(s) 115, 210, 543, 618, 972, 1493
BmrI ACTGGG 3 cut(s) 582, 633, 667
BmsI GCATC 5 cut(s) 835, 1118, 1743, 2267, 2375
BmuI ACTGGG 3 cut(s) 582, 633, 667
BoxI GACNNNNGTC 1 cut(s) 1448
BpiI GAAGAC 3 cut(s) 867, 1448, 2392
BplI GAGNNNNNCTC 2 cut(s) 2156, 2188
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 1645, 2382
BpuEI CTTGAG 3 cut(s) 145, 1493, 2293
BpuMI CCSGG 2 cut(s) 972, 1493
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 7 cut(s) 114, 541, 616, 725, 971, 1996, 2316
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 857, 887
Bsc4I CCNNNNNNNGG 4 cut(s) 336, 623, 2011, 2322
Bse118I RCCGGY 1 cut(s) 2322
Bse1I ACTGG 5 cut(s) 378, 577, 628, 673, 902
BseBI CCWGG 4 cut(s) 115, 210, 543, 618
BseDI CCNNGG 7 cut(s) 114, 541, 616, 725, 971, 1996, 2316
BseGI GGATG 7 cut(s) 154, 564, 1031, 1471, 1758, 2101, 2336
BseLI CCNNNNNNNGG 4 cut(s) 336, 623, 2011, 2322
BseMII CTCAG 2 cut(s) 1308, 1659
BseNI ACTGG 5 cut(s) 378, 577, 628, 673, 902
BseRI GAGGAG 3 cut(s) 83, 1758, 2177
BseXI GCAGC 6 cut(s) 195, 1130, 1541, 1653, 2398, 2410
BshFI GGCC 4 cut(s) 730, 1274, 1391, 2326
BshNI GGYRCC 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 2482
BsiHKCI CYCGRG 1 cut(s) 1894
BsiSI CCGG 4 cut(s) 971, 1275, 1493, 2323
BslFI GGGAC 3 cut(s) 131, 641, 2015
BslI CCNNNNNNNGG 4 cut(s) 336, 623, 2011, 2322
BsmAI GTCTC 5 cut(s) 288, 368, 408, 483, 1480
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 3 cut(s) 131, 641, 2015
BsmI GAATGC 3 cut(s) 1327, 2280, 2443
BsnI GGCC 4 cut(s) 730, 1274, 1391, 2326
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 1894
Bsp1286I GDGCHC 1 cut(s) 2482
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
Bsp19I CCATGG 1 cut(s) 1996
BspACI CCGC 2 cut(s) 226, 1326
BspANI GGCC 4 cut(s) 730, 1274, 1391, 2326
BspCNI CTCAG 2 cut(s) 1309, 1658
BspLI GGNNCC 3 cut(s) 656, 916, 2003
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 4 cut(s) 290, 733, 1094, 1926
BspT107I GGYRCC 1 cut(s) 914
BspTI CTTAAG 1 cut(s) 1427
BspTNI GGTCTC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 2322
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 5 cut(s) 378, 577, 628, 673, 902
BssAI RCCGGY 1 cut(s) 2322
BssECI CCNNGG 7 cut(s) 114, 541, 616, 725, 971, 1996, 2316
BssMI GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
BssSI CACGAG 1 cut(s) 1866
BssT1I CCWWGG 3 cut(s) 725, 1996, 2316
Bst2BI CACGAG 1 cut(s) 1866
Bst2UI CCWGG 4 cut(s) 115, 210, 543, 618
Bst4CI ACNGT 4 cut(s) 274, 941, 1377, 2295
Bst6I CTCTTC 3 cut(s) 92, 101, 2376
BstAFI CTTAAG 1 cut(s) 1427
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 6 cut(s) 1358, 1389, 1413, 2303, 2328, 2391
BstDEI CTNAG 8 cut(s) 466, 699, 1169, 1317, 1645, 1825, 2224, 2382
BstDSI CCRYGG 1 cut(s) 1996
BstF5I GGATG 7 cut(s) 154, 564, 1031, 1471, 1758, 2101, 2336
BstKTI GATC 7 cut(s) 131, 285, 741, 1102, 1285, 1513, 1921
BstMAI GTCTC 5 cut(s) 288, 368, 408, 483, 1480
BstMBI GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
BstMWI GCNNNNNNNGC 5 cut(s) 826, 930, 1115, 1322, 1388
BstNI CCWGG 4 cut(s) 115, 210, 543, 618
BstNSI RCATGY 4 cut(s) 1360, 2053, 2195, 2204
BstPAI GACNNNNGTC 1 cut(s) 1448
BstSCI CCNGG 6 cut(s) 113, 208, 541, 616, 970, 1491
BstSFI CTRYAG 2 cut(s) 393, 525
BstV1I GCAGC 6 cut(s) 195, 1130, 1541, 1653, 2398, 2410
BstV2I GAAGAC 3 cut(s) 867, 1448, 2392
BstX2I RGATCY 3 cut(s) 1099, 1282, 1918
BstYI RGATCY 3 cut(s) 1099, 1282, 1918
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 4 cut(s) 730, 1274, 1391, 2326
BtgI CCRYGG 1 cut(s) 1996
BtgZI GCGATG 1 cut(s) 2226
BtsCI GGATG 7 cut(s) 154, 564, 1031, 1471, 1758, 2101, 2336
BtsI GCAGTG 2 cut(s) 2073, 2425
BtsIMutI CAGTG 4 cut(s) 279, 946, 2073, 2425
Cac8I GCNNGC 6 cut(s) 1358, 1389, 1413, 2303, 2328, 2391
Cfr10I RCCGGY 1 cut(s) 2322
Cfr13I GGNCC 5 cut(s) 10, 1390, 1818, 2002, 2320
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 3 cut(s) 140, 443, 1397
CviQI GTAC 3 cut(s) 140, 443, 1397
DdeI CTNAG 8 cut(s) 466, 699, 1169, 1317, 1645, 1825, 2224, 2382
DpnI GATC 7 cut(s) 130, 284, 740, 1101, 1284, 1512, 1920
DpnII GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 2324
Eam1104I CTCTTC 3 cut(s) 92, 101, 2376
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 3 cut(s) 92, 101, 2376
Ecl136II GAGCTC 1 cut(s) 2480
Eco130I CCWWGG 3 cut(s) 725, 1996, 2316
Eco24I GRGCYC 1 cut(s) 2482
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 4 cut(s) 10, 1818, 2002, 2320
Eco53kI GAGCTC 1 cut(s) 2480
Eco57I CTGAAG 5 cut(s) 164, 187, 1330, 1994, 2386
Eco88I CYCGRG 1 cut(s) 1894
EcoICRI GAGCTC 1 cut(s) 2480
EcoO109I RGGNCCY 2 cut(s) 10, 1818
EcoRI GAATTC 1 cut(s) 1664
EcoRII CCWGG 4 cut(s) 113, 208, 541, 616
EcoT14I CCWWGG 3 cut(s) 725, 1996, 2316
EcoT22I ATGCAT 1 cut(s) 2282
EcoT38I GRGCYC 1 cut(s) 2482
ErhI CCWWGG 3 cut(s) 725, 1996, 2316
Esp3I CGTCTC 1 cut(s) 483
FaqI GGGAC 3 cut(s) 131, 641, 2015
FauNDI CATATG 2 cut(s) 439, 2041
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 7 cut(s) 184, 1119, 1326, 1530, 1642, 2387, 2424
FokI GGATG 7 cut(s) 161, 571, 1038, 1478, 1765, 2108, 2323
FriOI GRGCYC 1 cut(s) 2482
Fsp4HI GCNGC 7 cut(s) 184, 1119, 1326, 1530, 1642, 2387, 2424
FspBI CTAG 8 cut(s) 219, 350, 578, 1394, 1523, 1638, 1757, 1943
GluI GCNGC 7 cut(s) 184, 1119, 1326, 1530, 1642, 2387, 2424
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 730, 1274, 1391, 2326
HapII CCGG 4 cut(s) 971, 1275, 1493, 2323
HgaI GACGC 1 cut(s) 1115
HindIII AAGCTT 3 cut(s) 1205, 1718, 1783
HpaII CCGG 4 cut(s) 971, 1275, 1493, 2323
HphI GGTGA 9 cut(s) 319, 725, 870, 1105, 1607, 1673, 1877, 2046, 2372
Hpy166II GTNNAC 4 cut(s) 161, 968, 1037, 1264
Hpy188I TCNGA 9 cut(s) 265, 567, 743, 1021, 1515, 1549, 1972, 2095, 2405
Hpy8I GTNNAC 4 cut(s) 161, 968, 1037, 1264
HpyCH4III ACNGT 4 cut(s) 274, 941, 1377, 2295
HpyF10VI GCNNNNNNNGC 5 cut(s) 826, 930, 1115, 1322, 1388
HpyF3I CTNAG 8 cut(s) 466, 699, 1169, 1317, 1645, 1825, 2224, 2382
Kzo9I GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
LmnI GCTCC 2 cut(s) 654, 2477
Lsp1109I GCAGC 6 cut(s) 195, 1130, 1541, 1653, 2398, 2410
LweI GCATC 5 cut(s) 835, 1118, 1743, 2267, 2375
MaeI CTAG 8 cut(s) 219, 350, 578, 1394, 1523, 1638, 1757, 1943
MaeIII GTNAC 5 cut(s) 603, 664, 893, 1599, 2052
MalI GATC 7 cut(s) 130, 284, 740, 1101, 1284, 1512, 1920
MboI GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
MflI RGATCY 3 cut(s) 1099, 1282, 1918
MhlI GDGCHC 1 cut(s) 2482
MlyI GAGTC 3 cut(s) 1050, 1784, 1886
MmeI TCCRAC 3 cut(s) 980, 2014, 2269
Mph1103I ATGCAT 1 cut(s) 2282
MroXI GAANNNNTTC 2 cut(s) 1177, 2410
MseI TTAA 8 cut(s) 536, 590, 1221, 1428, 1554, 1901, 2451, 2459
MslI CAYNNNNRTG 1 cut(s) 912
MspCI CTTAAG 1 cut(s) 1427
MspI CCGG 4 cut(s) 971, 1275, 1493, 2323
MspR9I CCNGG 6 cut(s) 115, 210, 543, 618, 972, 1493
Mva1269I GAATGC 3 cut(s) 1327, 2280, 2443
MvaI CCWGG 4 cut(s) 115, 210, 543, 618
MwoI GCNNNNNNNGC 5 cut(s) 826, 930, 1115, 1322, 1388
NciI CCSGG 2 cut(s) 972, 1493
NcoI CCATGG 1 cut(s) 1996
NdeI CATATG 2 cut(s) 439, 2041
NdeII GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
NlaIV GGNNCC 3 cut(s) 656, 916, 2003
NmuCI GTSAC 4 cut(s) 603, 664, 893, 2052
NsiI ATGCAT 1 cut(s) 2282
NspI RCATGY 4 cut(s) 1360, 2053, 2195, 2204
PaeI GCATGC 1 cut(s) 1360
PaeR7I CTCGAG 1 cut(s) 1894
PciI ACATGT 2 cut(s) 2049, 2191
PctI GAATGC 3 cut(s) 1327, 2280, 2443
PdmI GAANNNNTTC 2 cut(s) 1177, 2410
PfeI GAWTC 8 cut(s) 495, 562, 1341, 1708, 2079, 2237, 2312, 2429
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 7 cut(s) 185, 1120, 1327, 1531, 1643, 2388, 2425
PleI GAGTC 3 cut(s) 1049, 1784, 1886
PpsI GAGTC 3 cut(s) 1049, 1784, 1886
PpuMI RGGWCCY 2 cut(s) 10, 1818
PscI ACATGT 2 cut(s) 2049, 2191
PshAI GACNNNNGTC 1 cut(s) 1448
PshBI ATTAAT 1 cut(s) 1221
PsiI TTATAA 3 cut(s) 366, 687, 1590
Psp124BI GAGCTC 1 cut(s) 2482
Psp5II RGGWCCY 2 cut(s) 10, 1818
Psp6I CCWGG 4 cut(s) 113, 208, 541, 616
PspGI CCWGG 4 cut(s) 113, 208, 541, 616
PspN4I GGNNCC 3 cut(s) 656, 916, 2003
PspPI GGNCC 5 cut(s) 10, 1390, 1818, 2002, 2320
PspPPI RGGWCCY 2 cut(s) 10, 1818
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 3 cut(s) 1099, 1282, 1918
RsaI GTAC 3 cut(s) 141, 444, 1398
RsaNI GTAC 3 cut(s) 140, 443, 1397
RseI CAYNNNNRTG 1 cut(s) 912
SacI GAGCTC 1 cut(s) 2482
SaqAI TTAA 8 cut(s) 536, 590, 1221, 1428, 1554, 1901, 2451, 2459
SatI GCNGC 7 cut(s) 184, 1119, 1326, 1530, 1642, 2387, 2424
Sau3AI GATC 7 cut(s) 128, 282, 738, 1099, 1282, 1510, 1918
Sau96I GGNCC 5 cut(s) 10, 1390, 1818, 2002, 2320
ScaI AGTACT 2 cut(s) 141, 1398
SchI GAGTC 3 cut(s) 1050, 1784, 1886
ScrFI CCNGG 6 cut(s) 115, 210, 543, 618, 972, 1493
SduI GDGCHC 1 cut(s) 2482
SfaNI GCATC 5 cut(s) 835, 1118, 1743, 2267, 2375
SfcI CTRYAG 2 cut(s) 393, 525
Sfr274I CTCGAG 1 cut(s) 1894
SinI GGWCC 4 cut(s) 10, 1818, 2002, 2320
SlaI CTCGAG 1 cut(s) 1894
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 5 cut(s) 124, 1427, 1472, 1894, 2272
SmoI CTYRAG 5 cut(s) 124, 1427, 1472, 1894, 2272
SpeI ACTAGT 1 cut(s) 1522
SphI GCATGC 1 cut(s) 1360
SsiI CCGC 2 cut(s) 226, 1326
SspI AATATT 2 cut(s) 1936, 1992
SspMI CTAG 8 cut(s) 219, 350, 578, 1394, 1523, 1638, 1757, 1943
SstI GAGCTC 1 cut(s) 2482
StyD4I CCNGG 6 cut(s) 113, 208, 541, 616, 970, 1491
StyI CCWWGG 3 cut(s) 725, 1996, 2316
TaaI ACNGT 4 cut(s) 274, 941, 1377, 2295
TaqI TCGA 8 cut(s) 131, 737, 954, 1112, 1509, 1764, 1895, 2482
TatI WGTACW 3 cut(s) 139, 442, 1396
TauI GCSGC 1 cut(s) 1328
TfiI GAWTC 8 cut(s) 495, 562, 1341, 1708, 2079, 2237, 2312, 2429
Tru1I TTAA 8 cut(s) 536, 590, 1221, 1428, 1554, 1901, 2451, 2459
Tru9I TTAA 8 cut(s) 536, 590, 1221, 1428, 1554, 1901, 2451, 2459
TscAI CASTG 4 cut(s) 279, 946, 2073, 2425
TseFI GTSAC 4 cut(s) 603, 664, 893, 2052
TseI GCWGC 6 cut(s) 183, 1118, 1529, 1641, 2386, 2423
Tsp45I GTSAC 4 cut(s) 603, 664, 893, 2052
TspGWI ACGGA 2 cut(s) 507, 2329
TspRI CASTG 4 cut(s) 279, 946, 2073, 2425
Vha464I CTTAAG 1 cut(s) 1427
VpaK11BI GGWCC 4 cut(s) 10, 1818, 2002, 2320
VspI ATTAAT 1 cut(s) 1221
XapI RAATTY 4 cut(s) 214, 1664, 1965, 2410
XbaI TCTAGA 1 cut(s) 1942
XceI RCATGY 4 cut(s) 1360, 2053, 2195, 2204
XhoI CTCGAG 1 cut(s) 1894
XmiI GTMKAC 1 cut(s) 967
XmnI GAANNNNTTC 2 cut(s) 1177, 2410
XspI CTAG 8 cut(s) 219, 350, 578, 1394, 1523, 1638, 1757, 1943
ZrmI AGTACT 2 cut(s) 141, 1398
Zsp2I ATGCAT 1 cut(s) 2282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.