RchiOBHm_Chr4g0422751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Reverse (-)
48354885 .. 48355364
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39219

Sequence Viewer

Length: 480 bp
ATGTTGTCGCACGTAATAAATCCCTGCATCTATTTTACAGGGCTAGTCGGGCTGAATGCATGTGTATGCACTCTAAGTGCCTTGTTTGCTCTAGGTAGGCGGCGAGTCAAATGGTTGCTACAGCTTGATGGCGGGGTGAAGCTAACTGTCGTCGGATTTAACCTCCGACGGCAACATAGTAGGAAAGTTTTGTTTATGGTAATTATACTACGTTGTAATCGGGTGACATATCGAGTTATCTTTTCATTATGTCACCGCTATGTCAAAGCAAATAGAGTAGCCAGTAGTGCACTCTTTGCTAGTTGGTGCGTAGTTGAATACATTTATTTGATAGAGACTCTTGTTATTATTTCAGGACGTTCTCTAGATGCTTATTGTAATCAAAGGTTTAGGCTCAATCTTGTATTCGATAGTTTCATTAATAAAGGCTTGAGGGCAGCTGCACCAGCCATTCATTCAAAAAAAAAAAAAAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.08

Weight (kDa)

10.42

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 100, 132, 256
AgsI TTSAA 2 cut(s) 317, 459
AluBI AGCT 3 cut(s) 124, 142, 440
AluI AGCT 3 cut(s) 124, 142, 440
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 288
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 437, 440
AseI ATTAAT 1 cut(s) 420
AsuHPI GGTGA 3 cut(s) 148, 235, 245
BaeGI GKGCMC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 427, 449
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 4 cut(s) 44, 92, 300, 365
BfmI CTRYAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 101, 438, 441
BlsI GCNGC 3 cut(s) 102, 439, 442
BmsI GCATC 2 cut(s) 36, 358
BpuEI CTTGAG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 427, 449
BsgI GTGCAG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 292
BspACI CCGC 3 cut(s) 100, 132, 256
BsrI ACTGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 74, 477
BstMAI GTCTC 1 cut(s) 329
BstMWI GCNNNNNNNGC 5 cut(s) 49, 86, 287, 296, 446
BstNSI RCATGY 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 427, 449
CviAII CATG 1 cut(s) 60
CviJI RGCY 9 cut(s) 43, 52, 124, 142, 281, 394, 429, 440, 449
CviKI_1 RGCY 9 cut(s) 43, 52, 124, 142, 281, 394, 429, 440, 449
DdeI CTNAG 2 cut(s) 74, 477
EcoT22I ATGCAT 1 cut(s) 61
FaeI CATG 1 cut(s) 63
FaiI YATR 8 cut(s) 61, 67, 177, 197, 206, 229, 250, 261
FatI CATG 1 cut(s) 59
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 101, 438, 441
Fsp4HI GCNGC 3 cut(s) 101, 438, 441
FspBI CTAG 4 cut(s) 44, 92, 300, 365
GluI GCNGC 3 cut(s) 101, 438, 441
Hin1II CATG 1 cut(s) 63
HinfI GANTC 2 cut(s) 105, 337
HphI GGTGA 3 cut(s) 148, 235, 245
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 155, 167
Hpy188III TCNNGA 2 cut(s) 354, 365
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 2 cut(s) 155, 171
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 3 cut(s) 12, 211, 358
HpyCH4V TGCA 5 cut(s) 27, 59, 69, 290, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 86, 287, 296, 446
HpyF3I CTNAG 2 cut(s) 74, 477
HpySE526I ACGT 3 cut(s) 12, 211, 358
Hsp92II CATG 1 cut(s) 63
LpnPI CCDG 5 cut(s) 24, 37, 295, 339, 459
Lsp1109I GCAGC 2 cut(s) 427, 449
LweI GCATC 2 cut(s) 36, 358
MaeI CTAG 4 cut(s) 44, 92, 300, 365
MaeII ACGT 3 cut(s) 12, 211, 358
MaeIII GTNAC 2 cut(s) 223, 251
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 114, 331
MmeI TCCRAC 2 cut(s) 133, 190
MnlI CCTC 2 cut(s) 173, 426
Mph1103I ATGCAT 1 cut(s) 61
MseI TTAA 2 cut(s) 159, 420
MslI CAYNNNNRTG 2 cut(s) 64, 258
MspA1I CMGCKG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 61
MwoI GCNNNNNNNGC 5 cut(s) 49, 86, 287, 296, 446
NlaIII CATG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 223, 251
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 1 cut(s) 63
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 102, 439, 442
PleI GAGTC 2 cut(s) 113, 331
PpsI GAGTC 2 cut(s) 113, 331
Ppu21I YACGTR 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 64, 258
SaqAI TTAA 2 cut(s) 159, 420
SatI GCNGC 3 cut(s) 101, 438, 441
SchI GAGTC 2 cut(s) 114, 331
SduI GDGCHC 1 cut(s) 292
SetI ASST 9 cut(s) 15, 97, 126, 144, 165, 214, 361, 389, 442
SfaNI GCATC 2 cut(s) 36, 358
SfcI CTRYAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 64, 258
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 1 cut(s) 201
SsiI CCGC 3 cut(s) 100, 132, 256
SspMI CTAG 4 cut(s) 44, 92, 300, 365
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 3 cut(s) 15, 214, 361
TaqI TCGA 2 cut(s) 232, 408
TasI AATT 1 cut(s) 201
TauI GCSGC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 159, 420
Tru9I TTAA 2 cut(s) 159, 420
TseFI GTSAC 2 cut(s) 223, 251
TseI GCWGC 2 cut(s) 437, 440
Tsp45I GTSAC 2 cut(s) 223, 251
TspDTI ATGAA 3 cut(s) 234, 406, 443
VneI GTGCAC 1 cut(s) 288
VspI ATTAAT 1 cut(s) 420
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 63
XspI CTAG 4 cut(s) 44, 92, 300, 365
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.