Rorug02G0279100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000267
Physical Location & Seq
Forward (+)
30142269 .. 30144895
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0279100.1

Sequence Viewer

Length: 321 bp
ATGTTCTCATGGATGCTGATGGGCACAAATGGCTATGCTCATTCACTTGCTTCTGTTGCAACTATTGCTGTGGATGCCTTATCAGTTTGGGAAAGCTCAACACCGGCAGAAATGATGGTTTGGCCATTGATCGTGGTTGCTACTCAAAATGCAATTGGTGATGTTCCATTGCAATGGTATCGGGATGAGAATCATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAAAAGGAAAGTGAAGAGAAATTCCAATCCTTTCTTGCTAGAGCTGATGATTCCAAAAATTGGTGGGTTTTACATAGGGCTTATGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.04

Weight (kDa)

5.84

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BOP1NT PF08145 60 - 99 6.2e-09 BOP1NT (NUC169) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 96, 272
AluI AGCT 2 cut(s) 96, 272
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 124
BccI CCATC 2 cut(s) 13, 109
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BfaI CTAG 1 cut(s) 267
BmsI GCATC 2 cut(s) 3, 64
BsaBI GATNNNNATC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 2 cut(s) 167, 179
Bse8I GATNNNNATC 1 cut(s) 189
BseGI GGATG 3 cut(s) 18, 79, 190
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 2 cut(s) 167, 179
BseSI GKGCMC 1 cut(s) 26
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 129, 205
BspANI GGCC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 167, 179
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 2 cut(s) 129, 205
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 65
BstF5I GGATG 3 cut(s) 18, 79, 190
BstKTI GATC 2 cut(s) 132, 208
BstMBI GATC 2 cut(s) 129, 205
BstMWI GCNNNNNNNGC 4 cut(s) 30, 56, 65, 74
BstSLI GKGCMC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 18, 79, 190
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 9
CviJI RGCY 5 cut(s) 33, 96, 124, 272, 308
CviKI_1 RGCY 5 cut(s) 33, 96, 124, 272, 308
CviQI GTAC 1 cut(s) 315
DpnI GATC 2 cut(s) 131, 207
DpnII GATC 2 cut(s) 129, 205
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
FaeI CATG 1 cut(s) 12
FaiI YATR 7 cut(s) 10, 36, 195, 204, 303, 312, 319
FatI CATG 1 cut(s) 8
FokI GGATG 3 cut(s) 25, 86, 197
FspBI CTAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 12
HinfI GANTC 2 cut(s) 190, 278
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 59, 152, 172
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 56, 65, 74
Hsp92II CATG 1 cut(s) 12
Kzo9I GATC 2 cut(s) 129, 205
LpnPI CCDG 2 cut(s) 117, 198
LweI GCATC 2 cut(s) 3, 64
MaeI CTAG 1 cut(s) 267
MalI GATC 2 cut(s) 131, 207
MboI GATC 2 cut(s) 129, 205
MboII GAAGA 3 cut(s) 229, 232, 254
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 3 cut(s) 153, 248, 286
MluNI TGGCCA 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 172
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 30, 56, 65, 74
NdeII GATC 2 cut(s) 129, 205
NlaIII CATG 1 cut(s) 12
PfeI GAWTC 2 cut(s) 190, 278
PflMI CCANNNNNTGG 1 cut(s) 288
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 2 cut(s) 129, 205
SduI GDGCHC 1 cut(s) 26
SetI ASST 2 cut(s) 98, 274
SfaNI GCATC 2 cut(s) 3, 64
SgeI CNNG 8 cut(s) 21, 59, 116, 145, 194, 225, 275, 279
SmiMI CAYNNNNRTG 1 cut(s) 172
Sse9I AATT 3 cut(s) 153, 248, 286
SspMI CTAG 1 cut(s) 267
TasI AATT 3 cut(s) 153, 248, 286
TfiI GAWTC 2 cut(s) 190, 278
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 288
XapI RAATTY 1 cut(s) 248
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.