FvH4_1g30321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000267
Physical Location & Seq
Forward (+)
24034674 .. 24037211
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30321.t1

Sequence Viewer

Length: 684 bp
ATGGTGATGCAAAAACATGTCGCCGGCAAGCCTCACCCTGCTACTGCGCTGGCAAGCCTCGATCCCAGAAAAATAGATCGAGATCGATCTACCCACTCCGGTCTCAAGCCCCCATTGTCCAACTTTGGACCATACATACCTATGCTATATAACTATGCTGCTAGTCCAGGCCACCATCCTCCCTCGAACCGGAACGTAATCGAGATCGCACGAAAGCACCGCTTTGAGTACATGTATATTGTGGAGACTCATGATATTATTTCAGGTCTTTCTAATAAGGGGTTTAGGCTCGGTGTCCCCCTTAGGCTGCTAGATTTGCTTGAATGGCTTGATTTCCTCTTTCTACCCCTTCTGAGTTCCAGAACTGGGCCCAAAGCTTCAAGGAGCTTTGTGCGTGTTTTCCCTAGGATCTCTCCTGCAGTAATATTGGCTTGCTGCGGGGACGATAACTTGATGCGTGAGCAGAAAAAGGATCTGGTGGTGTTTGATGGGTTTGAGTTCTCCCTAGCAGTCGTCAAGGGTTCCGTGTTCGAAAATTCTTACCAAACTCCTGCCATGGCAGCAAGCAACTTCTCCTTTGTCTGTTTTATGGGATCACCAGCAAGGAATGTTATCACTCAATCGAAGCTTTTGGAAAGCGGCTGTAGAGTCGGAAAATCGGCGAGGGTGTCGCTGGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.19

Weight (kDa)

9.66

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 220, 438, 639
AclWI GGATC 4 cut(s) 56, 416, 480, 601
AcsI RAATTY 1 cut(s) 535
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 189, 366
AflIII ACRYGT 2 cut(s) 16, 231
AgsI TTSAA 2 cut(s) 323, 381
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 377, 387, 628
AluI AGCT 3 cut(s) 377, 387, 628
Alw26I GTCTC 2 cut(s) 107, 239
AlwI GGATC 4 cut(s) 56, 416, 480, 601
AoxI GGCC 2 cut(s) 169, 368
ApaI GGGCCC 1 cut(s) 372
ApeKI GCWGC 4 cut(s) 158, 307, 435, 560
ApoI RAATTY 1 cut(s) 535
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 128, 368, 369
AsuHPI GGTGA 3 cut(s) 16, 26, 588
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 145, 294, 422, 572
BccI CCATC 2 cut(s) 183, 482
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 107, 239
BfaI CTAG 4 cut(s) 162, 311, 405, 506
BfmI CTRYAG 2 cut(s) 417, 643
BisI GCNGC 5 cut(s) 159, 308, 436, 561, 640
BlnI CCTAGG 1 cut(s) 404
BlsI GCNGC 5 cut(s) 160, 309, 437, 562, 641
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 128, 368, 369
BmiI GGNNCC 2 cut(s) 370, 523
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 404, 555
BsaWI WCCGGW 2 cut(s) 98, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 366
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 370
Bse21I CCTNAGG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 404, 555
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 189, 366
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 4 cut(s) 145, 294, 422, 572
BseYI CCCAGC 1 cut(s) 673
BshFI GGCC 2 cut(s) 171, 370
BshVI ATCGAT 1 cut(s) 85
BsiSI CCGG 3 cut(s) 24, 99, 190
BslFI GGGAC 2 cut(s) 281, 455
BslI CCNNNNNNNGG 2 cut(s) 189, 366
BsmAI GTCTC 2 cut(s) 107, 239
BsmFI GGGAC 2 cut(s) 281, 455
BsnI GGCC 2 cut(s) 171, 370
Bso31I GGTCTC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 531
Bsp120I GGGCCC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 3 cut(s) 220, 438, 639
BspANI GGCC 2 cut(s) 171, 370
BspCNI CTCAG 1 cut(s) 345
BspDI ATCGAT 1 cut(s) 85
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 370, 523
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 4 cut(s) 56, 416, 480, 601
BspT104I TTCGAA 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 404, 555
BssMI GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
BssT1I CCWWGG 2 cut(s) 404, 555
Bst2UI CCWGG 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 6 cut(s) 25, 29, 51, 55, 433, 565
BstDEI CTNAG 2 cut(s) 302, 353
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 8 cut(s) 64, 79, 85, 89, 207, 411, 475, 596
BstMAI GTCTC 2 cut(s) 107, 239
BstMBI GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
BstMWI GCNNNNNNNGC 3 cut(s) 316, 325, 560
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 20, 235
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 417, 643
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 145, 294, 422, 572
BstX2I RGATCY 2 cut(s) 408, 472
BstYI RGATCY 2 cut(s) 408, 472
Bsu15I ATCGAT 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 2 cut(s) 171, 370
BsuTUI ATCGAT 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 6 cut(s) 25, 29, 51, 55, 433, 565
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 128, 368, 369
ClaI ATCGAT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 229
CviAII CATG 4 cut(s) 17, 232, 251, 556
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 302, 353
DpnI GATC 8 cut(s) 63, 78, 84, 88, 206, 410, 474, 595
DpnII GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
Eco130I CCWWGG 2 cut(s) 404, 555
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 404, 555
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 404, 555
FaeI CATG 4 cut(s) 20, 235, 254, 559
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 2 cut(s) 281, 455
FatI CATG 4 cut(s) 16, 231, 250, 555
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 5 cut(s) 159, 308, 436, 561, 640
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 5 cut(s) 159, 308, 436, 561, 640
FspBI CTAG 4 cut(s) 162, 311, 405, 506
GlaI GCGC 1 cut(s) 48
GluI GCNGC 5 cut(s) 159, 308, 436, 561, 640
GsaI CCCAGC 1 cut(s) 677
HaeIII GGCC 2 cut(s) 171, 370
HapII CCGG 3 cut(s) 24, 99, 190
HhaI GCGC 1 cut(s) 49
Hin1II CATG 4 cut(s) 20, 235, 254, 559
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 375, 626
HinfI GANTC 2 cut(s) 247, 648
HpaII CCGG 3 cut(s) 24, 99, 190
HphI GGTGA 3 cut(s) 16, 26, 588
Hpy188I TCNGA 2 cut(s) 354, 653
Hpy188III TCNNGA 4 cut(s) 80, 202, 251, 360
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 10, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 325, 560
HpyF3I CTNAG 2 cut(s) 302, 353
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 20, 235, 254, 559
HspAI GCGC 1 cut(s) 47
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 4 cut(s) 145, 294, 422, 572
LweI GCATC 1 cut(s) 444
MaeI CTAG 4 cut(s) 162, 311, 405, 506
MaeII ACGT 1 cut(s) 195
MalI GATC 8 cut(s) 63, 78, 84, 88, 206, 410, 474, 595
MboI GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
MflI RGATCY 2 cut(s) 408, 472
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 2 cut(s) 535, 679
MlyI GAGTC 2 cut(s) 241, 657
MmeI TCCRAC 2 cut(s) 144, 631
MnlI CCTC 6 cut(s) 42, 68, 189, 193, 347, 657
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 682
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 3 cut(s) 24, 99, 190
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 316, 325, 560
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 555
NdeII GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 4 cut(s) 20, 235, 254, 559
NlaIV GGNNCC 2 cut(s) 370, 523
NspI RCATGY 2 cut(s) 20, 235
NspV TTCGAA 1 cut(s) 531
PagI TCATGA 1 cut(s) 250
PciI ACATGT 2 cut(s) 16, 231
PdiI GCCGGC 1 cut(s) 25
PkrI GCNGC 5 cut(s) 160, 309, 437, 562, 641
PleI GAGTC 2 cut(s) 241, 656
PpsI GAGTC 2 cut(s) 241, 656
PscI ACATGT 2 cut(s) 16, 231
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 673
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 370, 523
PspOMI GGGCCC 1 cut(s) 368
PspPI GGNCC 3 cut(s) 128, 368, 369
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 408, 472
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 682
SatI GCNGC 5 cut(s) 159, 308, 436, 561, 640
Sau3AI GATC 8 cut(s) 61, 76, 82, 86, 204, 408, 472, 593
Sau96I GGNCC 3 cut(s) 128, 368, 369
SchI GAGTC 2 cut(s) 241, 657
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 142, 198, 268, 379, 389, 630
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 2 cut(s) 417, 643
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 535, 679
SsiI CCGC 3 cut(s) 220, 438, 639
SspI AATATT 1 cut(s) 426
SspMI CTAG 4 cut(s) 162, 311, 405, 506
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 2 cut(s) 404, 555
TaiI ACGT 1 cut(s) 198
TaqI TCGA 7 cut(s) 60, 79, 85, 185, 201, 531, 623
TasI AATT 2 cut(s) 535, 679
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 642
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TseI GCWGC 4 cut(s) 158, 307, 435, 560
TspGWI ACGGA 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 535
XceI RCATGY 2 cut(s) 20, 235
XmaJI CCTAGG 1 cut(s) 404
XspI CTAG 4 cut(s) 162, 311, 405, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.