Rorug03G0105100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000267
Physical Location & Seq
Forward (+)
8323129 .. 8328100
4972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0105100.1

Sequence Viewer

Length: 1932 bp
ATGATAGTGGCCACGTCAGCGTCGTCGTCGTCGTCTTCGGCGAGTGTGGCGGTGGACAAGGCGACGAGCGATCTTCTGATAAACCCTGATTGGACGATGAACATCGATATCTGTGATTCCGTCAATTCTCATCAGTGGCAGGCAAAAGATGTCGTAAAAGCTGTAAAAAGAAGGTTGCAGCATAAGAACCCCAAAGTTCAATTCCTTGCTTTGACGCTATTGGAGACAATGGTGAAGAATTGTGGTGATTATATCCATTTTCAAATTGCAGAGAGGAATATATTGGGAGAGATGATAAAAATTGTGAGGAAGAAGTCAGATATGCAGGTAAGGGATAAGATTTTGATATTGGTGGACTCTTGGCAAGCAGCTTTTGGTGGGCCTTCAGGAAAGCATCCTCAGTACTATTGGGCATATGATGAGCTAAGGCGGTCTGGAGTAGAGTTTCCTAAGCATTCCTTAGATGCAGCTCCAATGTTTGCACCACCTGTTTCAAATTCAGTACCAAGACCTTCTCAAGCTGGATATGGAATGCCTAGCAATTCCTCAAGGCGGCTTGATGAGACAATGGCTACAGAAAACGAAAATTTAACTTTGACAAGCCTGGATTCTATGAGGGATGTTATGGAGCTCTTGAGTGACATGCTGCAAGCTGTGAACCCTAATGACCGATTGGGTGTAAAAGATGAAGTCATAGTTGAACTTGTCAACCAGTGTCGTGCCAACCAGAAAAAGCTGATTCATATGCTAACTACAACCGGAGATGAAGAACTTCTTGGACGGGGTCTCGAATTAAACGACAGTCTGCAAAGTTTGCTTGCAAAGCATGATGCTATAGCTTCTGGTTTACCTTTGCCAACCGCAAACTTTAGTCCTCAACCAGCTGAAATGCCCGCATCCAGTTCCAAGCATACTGAAGCAAAAGACTCCAGCACAAGTGACTCTAGTCCAAGACCTAAAGCTAGTCCCTCTGCACCAGTTGTTACCACGTTCAGGGTCCAAATTGATGAAGATGAAGAAGAGGAAGATGAATTTGCACAGCTAGCTCGAAGGCATTCCAAACAAAGTTCCTCCAAGCCTACTGAAAGCACACCTAATGGTACCAGTGAAGGTTTGGCATTGGTAAGCGTAGATCCGTCTCCGTCTGCATCAGTGGCAACATCTGTCCCAAACAACGCCTTAGTTCTGTCTGATCCACCTGCTTCAACTAAGACTACACAAGAGCAGAACATAATTGACCTACTGAGTATCACTTTGTCGACAACAGAAATCTCCAGTGACACCTCTCCTCCTCCTCCAATATCTGTCCCTCCCCCACTTCCGGCATCTAACGGTAATGTTCATCAGATACCTGTTTCCCCCGCTATACAAGGCAATCCCTATCCTTCCCAAGCTTATCCTGGAAATCCTGGGCTTGGATCCTACAACAGCTATGTTGTTCCTTGGGCACAACCTCAGGCCCAACAACCTCAATTCAGGCCGCAATTACAGCCACAGCAACCTCAATTCCAGTCGCAGTTTCAACCTCAATATCCCCAATACTCTTCTGCCTACCCTCCTCCACCATGGGCATCTTCTCCTGGTTATCCTAACAACCAAAATCATGTGCCCGCCAATAGTACGTATGCGGCTCCTCACACCAACACAACAGCTTACATGCCAGCGCAAGGAGCAAGGCCTTTGCAGCAGTATAATTCGTTCCCTGCGAGAGGAACCACTGGGTCAGATAACAACGGAGGTTTCCCAACAAATCCTGGTCCCAGGAGCCCTGGACCTGCTGCAGGACAAAAGCCCTTCATTCCCTCGTACCGATTATTTGAAGATCTGAATGTTTTTGGCAATGCTGATGGAAAGCTTAAGGTGGCGAACAGCAACCCATCATCTGGCTTCTCTGGAACTCCAGGCCAAGGTATGGTGGGTGGGAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

643

Amino Acids

69.38

Weight (kDa)

5.79

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 10 - 130 6.8e-33 VHS domain
GAT PF03127 208 - 282 8.7e-19 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1207
Acc36I ACCTGC 3 cut(s) 316, 1207, 1783
Acc65I GGTACC 1 cut(s) 1100
AccB1I GGYRCC 1 cut(s) 1100
AccB7I CCANNNNNTGG 2 cut(s) 1883, 1912
AccI GTMKAC 1 cut(s) 1259
AciI CCGC 9 cut(s) 50, 430, 553, 861, 894, 1362, 1481, 1611, 1628
AclWI GGATC 4 cut(s) 1127, 1187, 1413, 1426
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 3 cut(s) 496, 586, 1031
AcuI CTGAAG 2 cut(s) 369, 936
AfaI GTAC 5 cut(s) 404, 504, 1102, 1621, 1808
AflII CTTAAG 1 cut(s) 1856
AgsI TTSAA 7 cut(s) 200, 263, 495, 701, 1206, 1523, 1820
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
AjuI GAANNNNNNNTTGG 4 cut(s) 185, 217, 759, 791
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 4 cut(s) 218, 557, 791, 1143
AlwI GGATC 4 cut(s) 1127, 1187, 1413, 1426
AoxI GGCC 6 cut(s) 9, 380, 1458, 1478, 1676, 1903
ApeKI GCWGC 6 cut(s) 178, 368, 467, 646, 1684, 1778
ApoI RAATTY 3 cut(s) 496, 586, 1031
Asp700I GAANNNNTTC 2 cut(s) 771, 1054
Asp718I GGTACC 1 cut(s) 1100
AspLEI GCGC 1 cut(s) 1666
AspS9I GGNCC 5 cut(s) 380, 997, 1459, 1757, 1772
AsuHPI GGTGA 2 cut(s) 244, 257
AsuNHI GCTAGC 1 cut(s) 1042
AvaII GGWCC 3 cut(s) 997, 1757, 1772
AxyI CCTNAGG 1 cut(s) 1455
BaeGI GKGCMC 2 cut(s) 1450, 1611
BalI TGGCCA 1 cut(s) 11
BamHI GGATCC 1 cut(s) 1418
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 2 cut(s) 633, 1769
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 6 cut(s) 190, 380, 479, 633, 1696, 1765
BccI CCATC 2 cut(s) 1841, 1885
BciT130I CCWGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
BcoDI GTCTC 4 cut(s) 218, 557, 791, 1143
BfaI CTAG 4 cut(s) 537, 945, 963, 1043
BfmI CTRYAG 3 cut(s) 573, 834, 1779
BfrI CTTAAG 1 cut(s) 1856
BfuAI ACCTGC 3 cut(s) 316, 1207, 1783
BglII AGATCT 1 cut(s) 1822
BisI GCNGC 9 cut(s) 179, 369, 468, 554, 647, 1481, 1629, 1685, 1779
BlsI GCNGC 9 cut(s) 180, 370, 469, 555, 648, 1482, 1630, 1686, 1780
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
Bme18I GGWCC 3 cut(s) 997, 1757, 1772
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 5 cut(s) 380, 997, 1459, 1757, 1772
BmiI GGNNCC 7 cut(s) 998, 1102, 1420, 1632, 1714, 1759, 1766
BmrFI CCNGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
BmrI ACTGGG 1 cut(s) 1728
BmsI GCATC 7 cut(s) 403, 454, 820, 905, 1157, 1334, 1580
BmtI GCTAGC 1 cut(s) 1046
BmuI ACTGGG 1 cut(s) 1728
BoxI GACNNNNGTC 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 4 cut(s) 456, 913, 1258, 1884
Bpu10I CCTNAGC 2 cut(s) 425, 450
BpuEI CTTGAG 3 cut(s) 501, 532, 655
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 1623
BsaBI GATNNNNATC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 6 cut(s) 1409, 1442, 1565, 1760, 1768, 1906
BsaWI WCCGGW 1 cut(s) 758
BsaXI ACNNNNNCTCC 2 cut(s) 1273, 1303
Bse1I ACTGG 7 cut(s) 712, 900, 977, 1104, 1275, 1510, 1723
Bse21I CCTNAGG 1 cut(s) 1455
Bse3DI GCAATG 1 cut(s) 1846
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 6 cut(s) 1409, 1442, 1565, 1760, 1768, 1906
BseGI GGATG 3 cut(s) 394, 625, 896
BseJI GATNNNNATC 1 cut(s) 101
BseMI GCAATG 1 cut(s) 1846
BseMII CTCAG 3 cut(s) 413, 1235, 1469
BseNI ACTGG 7 cut(s) 712, 900, 977, 1104, 1275, 1510, 1723
BseRI GAGGAG 5 cut(s) 1278, 1281, 1284, 1548, 1623
BseSI GKGCMC 2 cut(s) 1450, 1611
BseXI GCAGC 6 cut(s) 190, 380, 479, 633, 1696, 1765
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 6 cut(s) 11, 382, 1460, 1480, 1678, 1905
BshNI GGYRCC 1 cut(s) 1100
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 2 cut(s) 759, 1322
BslFI GGGAC 4 cut(s) 951, 1151, 1292, 1743
BsmAI GTCTC 4 cut(s) 218, 557, 791, 1143
BsmBI CGTCTC 1 cut(s) 1143
BsmFI GGGAC 4 cut(s) 951, 1151, 1292, 1743
BsmI GAATGC 3 cut(s) 454, 537, 1054
BsnI GGCC 6 cut(s) 11, 382, 1460, 1480, 1678, 1905
Bso31I GGTCTC 1 cut(s) 791
Bsp1286I GDGCHC 4 cut(s) 633, 1450, 1611, 1769
Bsp143I GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
Bsp19I CCATGG 1 cut(s) 1565
BspACI CCGC 9 cut(s) 50, 430, 553, 861, 894, 1362, 1481, 1611, 1628
BspANI GGCC 6 cut(s) 11, 382, 1460, 1480, 1678, 1905
BspCNI CTCAG 3 cut(s) 412, 1236, 1468
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 7 cut(s) 998, 1102, 1420, 1632, 1714, 1759, 1766
BspMAI CTGCAG 1 cut(s) 1783
BspMI ACCTGC 3 cut(s) 316, 1207, 1783
BspOI GCTAGC 1 cut(s) 1046
BspPI GGATC 4 cut(s) 1127, 1187, 1413, 1426
BspT107I GGYRCC 1 cut(s) 1100
BspTI CTTAAG 1 cut(s) 1856
BspTNI GGTCTC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 1846
BsrI ACTGG 7 cut(s) 712, 900, 977, 1104, 1275, 1510, 1723
BssECI CCNNGG 6 cut(s) 1409, 1442, 1565, 1760, 1768, 1906
BssMI GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
BssT1I CCWWGG 3 cut(s) 1442, 1565, 1906
Bst2UI CCWGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
Bst4CI ACNGT 2 cut(s) 803, 1334
Bst6I CTCTTC 2 cut(s) 1014, 1549
BstAFI CTTAAG 1 cut(s) 1856
BstAPI GCANNNNNTGC 1 cut(s) 814
BstBAI YACGTR 1 cut(s) 1623
BstC8I GCNNGC 8 cut(s) 141, 366, 651, 819, 894, 1044, 1611, 1662
BstDEI CTNAG 8 cut(s) 399, 425, 450, 460, 1180, 1209, 1244, 1455
BstDSI CCRYGG 1 cut(s) 1565
BstENI CCTNNNNNAGG 2 cut(s) 1707, 1779
BstF5I GGATG 3 cut(s) 394, 625, 896
BstHHI GCGC 1 cut(s) 1666
BstKTI GATC 5 cut(s) 73, 1135, 1195, 1421, 1825
BstMAI GTCTC 4 cut(s) 218, 557, 791, 1143
BstMBI GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
BstMWI GCNNNNNNNGC 9 cut(s) 17, 47, 814, 823, 1043, 1154, 1489, 1670, 1684
BstNI CCWGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
BstNSI RCATGY 2 cut(s) 646, 1660
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
BstSFI CTRYAG 3 cut(s) 573, 834, 1779
BstSLI GKGCMC 2 cut(s) 1450, 1611
BstSNI TACGTA 1 cut(s) 1623
BstV1I GCAGC 6 cut(s) 190, 380, 479, 633, 1696, 1765
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 1132, 1418, 1822
BstYI RGATCY 3 cut(s) 1132, 1418, 1822
Bsu15I ATCGAT 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 1455
BsuRI GGCC 6 cut(s) 11, 382, 1460, 1480, 1678, 1905
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 1565
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 394, 625, 896
BtsIMutI CAGTG 6 cut(s) 140, 719, 1111, 1158, 1282, 1716
BveI ACCTGC 3 cut(s) 316, 1207, 1783
Cac8I GCNNGC 8 cut(s) 141, 366, 651, 819, 894, 1044, 1611, 1662
CfoI GCGC 1 cut(s) 1666
Cfr13I GGNCC 5 cut(s) 380, 997, 1459, 1757, 1772
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 2 cut(s) 9, 223
Csp6I GTAC 5 cut(s) 403, 503, 1101, 1620, 1807
CviAII CATG 5 cut(s) 643, 827, 1566, 1604, 1657
CviQI GTAC 5 cut(s) 403, 503, 1101, 1620, 1807
DdeI CTNAG 8 cut(s) 399, 425, 450, 460, 1180, 1209, 1244, 1455
DpnI GATC 5 cut(s) 72, 1134, 1194, 1420, 1824
DpnII GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 1014, 1549
EarI CTCTTC 2 cut(s) 1014, 1549
Ecl136II GAGCTC 1 cut(s) 631
Eco105I TACGTA 1 cut(s) 1623
Eco130I CCWWGG 3 cut(s) 1442, 1565, 1906
Eco147I AGGCCT 1 cut(s) 1678
Eco24I GRGCYC 2 cut(s) 633, 1769
Eco31I GGTCTC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 997, 1757, 1772
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 369, 936
Eco81I CCTNAGG 1 cut(s) 1455
EcoICRI GAGCTC 1 cut(s) 631
EcoNI CCTNNNNNAGG 2 cut(s) 1707, 1779
EcoRII CCWGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 1442, 1565, 1906
EcoT38I GRGCYC 2 cut(s) 633, 1769
ErhI CCWWGG 3 cut(s) 1442, 1565, 1906
Esp3I CGTCTC 1 cut(s) 1143
FaeI CATG 5 cut(s) 646, 830, 1569, 1607, 1660
FalI AAGNNNNNCTT 4 cut(s) 443, 475, 759, 791
FaqI GGGAC 4 cut(s) 951, 1151, 1292, 1743
FatI CATG 5 cut(s) 642, 826, 1565, 1603, 1656
FauI CCCGC 3 cut(s) 901, 1369, 1618
FauNDI CATATG 2 cut(s) 415, 744
FblI GTMKAC 1 cut(s) 1259
Fnu4HI GCNGC 9 cut(s) 179, 369, 468, 554, 647, 1481, 1629, 1685, 1779
FokI GGATG 3 cut(s) 381, 632, 883
FriOI GRGCYC 2 cut(s) 633, 1769
Fsp4HI GCNGC 9 cut(s) 179, 369, 468, 554, 647, 1481, 1629, 1685, 1779
FspBI CTAG 4 cut(s) 537, 945, 963, 1043
GlaI GCGC 1 cut(s) 1665
GluI GCNGC 9 cut(s) 179, 369, 468, 554, 647, 1481, 1629, 1685, 1779
GsuI CTGGAG 4 cut(s) 456, 913, 1258, 1884
HaeIII GGCC 6 cut(s) 11, 382, 1460, 1480, 1678, 1905
HapII CCGG 2 cut(s) 759, 1322
HgaI GACGC 2 cut(s) 9, 223
HhaI GCGC 1 cut(s) 1666
Hin1II CATG 5 cut(s) 646, 830, 1569, 1607, 1660
Hin6I GCGC 1 cut(s) 1664
HinP1I GCGC 1 cut(s) 1664
HincII GTYRAC 2 cut(s) 709, 1260
HindII GTYRAC 2 cut(s) 709, 1260
HindIII AAGCTT 2 cut(s) 1392, 1853
HinfI GANTC 6 cut(s) 116, 356, 608, 739, 926, 941
HpaII CCGG 2 cut(s) 759, 1322
HphI GGTGA 2 cut(s) 244, 257
Hpy166II GTNNAC 6 cut(s) 55, 355, 658, 709, 848, 1260
Hpy188I TCNGA 6 cut(s) 78, 319, 1192, 1347, 1726, 1827
Hpy188III TCNNGA 5 cut(s) 387, 435, 634, 788, 1893
Hpy8I GTNNAC 6 cut(s) 55, 355, 658, 709, 848, 1260
Hpy99I CGWCG 5 cut(s) 25, 28, 31, 34, 67
HpyAV CCTTC 7 cut(s) 165, 393, 522, 1044, 1103, 1395, 1804
HpyCH4III ACNGT 2 cut(s) 803, 1334
HpyCH4IV ACGT 3 cut(s) 14, 989, 1622
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 47, 814, 823, 1043, 1154, 1489, 1670, 1684
HpyF3I CTNAG 8 cut(s) 399, 425, 450, 460, 1180, 1209, 1244, 1455
HpySE526I ACGT 3 cut(s) 14, 989, 1622
Hsp92II CATG 5 cut(s) 646, 830, 1569, 1607, 1660
HspAI GCGC 1 cut(s) 1664
KpnI GGTACC 1 cut(s) 1104
Kzo9I GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
LmnI GCTCC 5 cut(s) 475, 628, 1636, 1670, 1764
Lsp1109I GCAGC 6 cut(s) 190, 380, 479, 633, 1696, 1765
LweI GCATC 7 cut(s) 403, 454, 820, 905, 1157, 1334, 1580
MaeI CTAG 4 cut(s) 537, 945, 963, 1043
MaeII ACGT 3 cut(s) 14, 989, 1622
MaeIII GTNAC 4 cut(s) 638, 938, 982, 1277
MalI GATC 5 cut(s) 72, 1134, 1194, 1420, 1824
MboI GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
MflI RGATCY 3 cut(s) 1132, 1418, 1822
MhlI GDGCHC 4 cut(s) 633, 1450, 1611, 1769
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 3 cut(s) 350, 920, 935
Mox20I TGGCCA 1 cut(s) 11
MroXI GAANNNNTTC 2 cut(s) 771, 1054
MscI TGGCCA 1 cut(s) 11
MseI TTAA 3 cut(s) 590, 794, 1857
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 884
MspCI CTTAAG 1 cut(s) 1856
MspI CCGG 2 cut(s) 759, 1322
MspR9I CCNGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
Mva1269I GAATGC 3 cut(s) 454, 537, 1054
MvaI CCWGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
MwoI GCNNNNNNNGC 9 cut(s) 17, 47, 814, 823, 1043, 1154, 1489, 1670, 1684
NcoI CCATGG 1 cut(s) 1565
NdeI CATATG 2 cut(s) 415, 744
NdeII GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
NheI GCTAGC 1 cut(s) 1042
NlaIII CATG 5 cut(s) 646, 830, 1569, 1607, 1660
NlaIV GGNNCC 7 cut(s) 998, 1102, 1420, 1632, 1714, 1759, 1766
NmuCI GTSAC 3 cut(s) 638, 938, 1277
NspI RCATGY 2 cut(s) 646, 1660
PaqCI CACCTGC 1 cut(s) 1207
PceI AGGCCT 1 cut(s) 1678
PcsI WCGNNNNNNNCGW 5 cut(s) 20, 29, 38, 795, 1703
PctI GAATGC 3 cut(s) 454, 537, 1054
PdmI GAANNNNTTC 2 cut(s) 771, 1054
PfeI GAWTC 3 cut(s) 116, 608, 739
PflFI GACNNNGTC 1 cut(s) 783
PflMI CCANNNNNTGG 2 cut(s) 1883, 1912
PfoI TCCNGGA 1 cut(s) 1399
PkrI GCNGC 9 cut(s) 180, 370, 469, 555, 648, 1482, 1630, 1686, 1780
PleI GAGTC 3 cut(s) 350, 920, 935
PpsI GAGTC 3 cut(s) 350, 920, 935
Ppu21I YACGTR 1 cut(s) 1623
PshAI GACNNNNGTC 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
PspGI CCWGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
PspN4I GGNNCC 7 cut(s) 998, 1102, 1420, 1632, 1714, 1759, 1766
PspPI GGNCC 5 cut(s) 380, 997, 1459, 1757, 1772
PsrI GAACNNNNNNTAC 2 cut(s) 1682, 1714
PstI CTGCAG 1 cut(s) 1783
PsuI RGATCY 3 cut(s) 1132, 1418, 1822
PsyI GACNNNGTC 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 5 cut(s) 404, 504, 1102, 1621, 1808
RsaNI GTAC 5 cut(s) 403, 503, 1101, 1620, 1807
SacI GAGCTC 1 cut(s) 633
SalI GTCGAC 1 cut(s) 1258
SaqAI TTAA 3 cut(s) 590, 794, 1857
SatI GCNGC 9 cut(s) 179, 369, 468, 554, 647, 1481, 1629, 1685, 1779
Sau3AI GATC 5 cut(s) 70, 1132, 1192, 1418, 1822
Sau96I GGNCC 5 cut(s) 380, 997, 1459, 1757, 1772
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 3 cut(s) 350, 920, 935
ScrFI CCNGG 8 cut(s) 605, 1401, 1410, 1581, 1755, 1762, 1770, 1902
SduI GDGCHC 4 cut(s) 633, 1450, 1611, 1769
SfaNI GCATC 7 cut(s) 403, 454, 820, 905, 1157, 1334, 1580
SfcI CTRYAG 3 cut(s) 573, 834, 1779
SinI GGWCC 3 cut(s) 997, 1757, 1772
SmlI CTYRAG 4 cut(s) 516, 547, 634, 1856
SmoI CTYRAG 4 cut(s) 516, 547, 634, 1856
SnaBI TACGTA 1 cut(s) 1623
SseBI AGGCCT 1 cut(s) 1678
SsiI CCGC 9 cut(s) 50, 430, 553, 861, 894, 1362, 1481, 1611, 1628
SspMI CTAG 4 cut(s) 537, 945, 963, 1043
SstI GAGCTC 1 cut(s) 633
StuI AGGCCT 1 cut(s) 1678
StyD4I CCNGG 8 cut(s) 603, 1399, 1408, 1579, 1753, 1760, 1768, 1900
StyI CCWWGG 3 cut(s) 1442, 1565, 1906
TaaI ACNGT 2 cut(s) 803, 1334
TaiI ACGT 3 cut(s) 17, 992, 1625
TaqI TCGA 4 cut(s) 105, 789, 1048, 1259
TaqII GACCGA 1 cut(s) 684
TatI WGTACW 1 cut(s) 402
TauI GCSGC 3 cut(s) 556, 1483, 1631
TfiI GAWTC 3 cut(s) 116, 608, 739
Tru1I TTAA 3 cut(s) 590, 794, 1857
Tru9I TTAA 3 cut(s) 590, 794, 1857
TscAI CASTG 6 cut(s) 140, 719, 1111, 1158, 1282, 1723
TseFI GTSAC 3 cut(s) 638, 938, 1277
TseI GCWGC 6 cut(s) 178, 368, 467, 646, 1684, 1778
Tsp45I GTSAC 3 cut(s) 638, 938, 1277
TspDTI ATGAA 9 cut(s) 113, 702, 731, 780, 1023, 1029, 1044, 1331, 1786
TspGWI ACGGA 4 cut(s) 109, 1125, 1131, 1749
TspRI CASTG 6 cut(s) 140, 719, 1111, 1158, 1282, 1723
Tth111I GACNNNGTC 1 cut(s) 783
Van91I CCANNNNNTGG 2 cut(s) 1883, 1912
Vha464I CTTAAG 1 cut(s) 1856
VpaK11BI GGWCC 3 cut(s) 997, 1757, 1772
XagI CCTNNNNNAGG 2 cut(s) 1707, 1779
XapI RAATTY 3 cut(s) 496, 586, 1031
XceI RCATGY 2 cut(s) 646, 1660
XcmI CCANNNNNNNNNTGG 2 cut(s) 1111, 1397
XmiI GTMKAC 1 cut(s) 1259
XmnI GAANNNNTTC 2 cut(s) 771, 1054
XspI CTAG 4 cut(s) 537, 945, 963, 1043
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.