Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000376.1

Orthogroup ID

OG0000267

Physical Location & Seq

Genomic Coordinates Reverse (-)

134068 .. 137528

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000376.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgattacggaggctagcggtgtggctctggggcagcggtctggcttagggatgggtattggcagctgctgcttggatcggggtggagttaccagatctgggtccgttcttcgtcgatcgtgggtgggagttggtttagtcttccggcgtgttgcgatttcccagcggggttcgatttgctggttgttgagggtgtctcggctttggacggtggagtggcagtggccggattctcgatctcttagaggtgtcgagtccattgagacctcagatgaaagtcttcgtattgtcgctctcgcttccttttccttcgaccacaaccacgacgacggagacaacgacgactctagaaaacgcatgaggcgagaccgcaactgcaacccttttgagcccactaggcctgccatgaaaccctatgacactggggatctaaatactggagagttcgagaaacacacaaggggcatcagcatgaaattgctgatgaaaatgggctataacggaggtggaattggcaaaaaggagaaaggtattgtgggcccaattgaactctgggttgggtgccggcatttagttcagatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

194

Amino Acids

21.61

Weight (kDa)

9.46

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis	RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata	RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora	Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa	Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha	Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana	Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	561
AciI	CCGC	4 cut(s)	18, 37, 166, 370
AclWI	GGATC	2 cut(s)	84, 435
AcoI	YGGCCR	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw26I	GTCTC	4 cut(s)	201, 257, 327, 360
AlwI	GGATC	2 cut(s)	84, 435
AlwNI	CAGNNNCTG	1 cut(s)	69
AoxI	GGCC	3 cut(s)	224, 398, 538
ApaI	GGGCCC	1 cut(s)	542
ApeKI	GCWGC	4 cut(s)	34, 63, 66, 69
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	102, 538, 539
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	2 cut(s)	393, 542
BbsI	GAAGAC	2 cut(s)	133, 272
BbvI	GCAGC	4 cut(s)	46, 53, 56, 75
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	201, 257, 327, 360
BfaI	CTAG	3 cut(s)	15, 348, 396
BglI	GCCNNNNNGGC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	4 cut(s)	35, 64, 67, 70
BlsI	GCNGC	4 cut(s)	36, 65, 68, 71
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	102, 538, 539
BmiI	GGNNCC	3 cut(s)	103, 540, 563
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	474
BmtI	GCTAGC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	2 cut(s)	133, 272
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	46
BsaI	GGTCTC	2 cut(s)	257, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	2 cut(s)	427, 442
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	427, 442
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	4 cut(s)	46, 53, 56, 75
BseYI	CCCAGC	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	226, 400, 540
BshNI	GGYRCC	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	145, 227, 565
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	4 cut(s)	201, 257, 327, 360
BsnI	GGCC	3 cut(s)	226, 400, 540
Bso31I	GGTCTC	2 cut(s)	257, 360
Bsp120I	GGGCCC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	393, 542
Bsp143I	GATC	5 cut(s)	76, 95, 116, 236, 427
BspACI	CCGC	4 cut(s)	18, 37, 166, 370
BspANI	GGCC	3 cut(s)	226, 400, 540
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	103, 540, 563
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	84, 435
BspT107I	GGYRCC	1 cut(s)	561
BspTNI	GGTCTC	2 cut(s)	257, 360
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	427, 442
BssAI	RCCGGY	1 cut(s)	564
BssMI	GATC	5 cut(s)	76, 95, 116, 236, 427
Bst4CI	ACNGT	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	16, 402, 566
BstDEI	CTNAG	3 cut(s)	46, 242, 268
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	5 cut(s)	79, 98, 119, 239, 430
BstMAI	GTCTC	4 cut(s)	201, 257, 327, 360
BstMBI	GATC	5 cut(s)	76, 95, 116, 236, 427
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 397
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	4 cut(s)	46, 53, 56, 75
BstV2I	GAAGAC	2 cut(s)	133, 272
BstX2I	RGATCY	2 cut(s)	95, 427
BstYI	RGATCY	2 cut(s)	95, 427
BsuRI	GGCC	3 cut(s)	226, 400, 540
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 420
Cac8I	GCNNGC	3 cut(s)	16, 402, 566
CaiI	CAGNNNCTG	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	3 cut(s)	102, 538, 539
CviAII	CATG	3 cut(s)	358, 406, 472
DdeI	CTNAG	3 cut(s)	46, 242, 268
DpnI	GATC	5 cut(s)	78, 97, 118, 238, 429
DpnII	GATC	5 cut(s)	76, 95, 116, 236, 427
EaeI	YGGCCR	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	400
Eco24I	GRGCYC	2 cut(s)	393, 542
Eco31I	GGTCTC	2 cut(s)	257, 360
Eco47I	GGWCC	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	393, 542
FaeI	CATG	3 cut(s)	361, 409, 475
FaiI	YATR	5 cut(s)	359, 407, 417, 473, 498
FatI	CATG	3 cut(s)	357, 405, 471
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	35, 64, 67, 70
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	2 cut(s)	393, 542
Fsp4HI	GCNGC	4 cut(s)	35, 64, 67, 70
FspBI	CTAG	3 cut(s)	15, 348, 396
GluI	GCNGC	4 cut(s)	35, 64, 67, 70
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	226, 400, 540
HapII	CCGG	3 cut(s)	145, 227, 565
Hin1II	CATG	3 cut(s)	361, 409, 475
HinfI	GANTC	3 cut(s)	230, 254, 344
HpaII	CCGG	3 cut(s)	145, 227, 565
Hpy188I	TCNGA	2 cut(s)	271, 579
Hpy188III	TCNNGA	3 cut(s)	234, 348, 448
Hpy99I	CGWCG	4 cut(s)	117, 329, 332, 344
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 397
HpyF3I	CTNAG	3 cut(s)	46, 242, 268
Hsp92II	CATG	3 cut(s)	361, 409, 475
KroI	GCCGGC	1 cut(s)	564
KroNI	GCCGGC	1 cut(s)	566
Kzo9I	GATC	5 cut(s)	76, 95, 116, 236, 427
Lsp1109I	GCAGC	4 cut(s)	46, 53, 56, 75
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	15, 348, 396
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	78, 97, 118, 238, 429
MboI	GATC	5 cut(s)	76, 95, 116, 236, 427
MboII	GAAGA	3 cut(s)	101, 133, 272
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	2 cut(s)	95, 427
MhlI	GDGCHC	2 cut(s)	393, 542
MluCI	AATT	3 cut(s)	476, 510, 543
MlyI	GAGTC	2 cut(s)	263, 338
MnlI	CCTC	6 cut(s)	4, 183, 239, 277, 354, 497
MroNI	GCCGGC	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	583
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	3 cut(s)	37, 66, 166
MspI	CCGG	3 cut(s)	145, 227, 565
MunI	CAATTG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	69, 397
NaeI	GCCGGC	1 cut(s)	566
NdeII	GATC	5 cut(s)	76, 95, 116, 236, 427
NgoMIV	GCCGGC	1 cut(s)	564
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	361, 409, 475
NlaIV	GGNNCC	3 cut(s)	103, 540, 563
NmeAIII	GCCGAG	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	2 cut(s)	336, 361
PdiI	GCCGGC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	36, 65, 68, 71
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	2 cut(s)	262, 338
PpsI	GAGTC	2 cut(s)	262, 338
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	103, 540, 563
PspOMI	GGGCCC	1 cut(s)	538
PspPI	GGNCC	3 cut(s)	102, 538, 539
PstNI	CAGNNNCTG	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	95, 427
PvuI	CGATCG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	583
SatI	GCNGC	4 cut(s)	35, 64, 67, 70
Sau3AI	GATC	5 cut(s)	76, 95, 116, 236, 427
Sau96I	GGNCC	3 cut(s)	102, 538, 539
SchI	GAGTC	2 cut(s)	263, 338
SduI	GDGCHC	2 cut(s)	393, 542
SetI	ASST	5 cut(s)	68, 250, 269, 508, 532
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	476, 510, 543
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	4 cut(s)	18, 37, 166, 370
SspMI	CTAG	3 cut(s)	15, 348, 396
StuI	AGGCCT	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	6 cut(s)	115, 173, 235, 252, 312, 447
TasI	AATT	3 cut(s)	476, 510, 543
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	583
Tru9I	TTAA	1 cut(s)	583
TscAI	CASTG	2 cut(s)	227, 427
TseI	GCWGC	4 cut(s)	34, 63, 66, 69
TspDTI	ATGAA	4 cut(s)	288, 422, 488, 500
TspGWI	ACGGA	4 cut(s)	23, 94, 345, 516
TspRI	CASTG	2 cut(s)	227, 427
VpaK11BI	GGWCC	1 cut(s)	102
XbaI	TCTAGA	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	15, 348, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.