FvH4_1g19660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000267
Physical Location & Seq
Reverse (-)
11881141 .. 11884171
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19660.t1

Sequence Viewer

Length: 462 bp
ATGCAACGTGCTATGACTGCTTTACTGATGAAGCGAGTTCCTTGCTTAGTCAAATGGTCGCAGCCTCGTTACGGCAGAGTGAAATCTTTGCATAATGGGAAAGCGGATATACATAGTCTTTTATGGCTCCATATGAGTTTTAGCTTTCCGTTATGTCGCCATGTTTTATGCAAAGCAAATAAAATCGTTAATGATGCACTCTTTGCTAAATGGTTCTTACTTGAATGCATAGGTTGTGTAGAGTCTCCTGATATTATTGTCAGTGTCCTCTTCGCCTTCGCCCCATCGCGTCTGGGTCAAGCGAGCAGCGACGATAAGTTTTGTGGCTACCGAGAATGCAAAGAAAAGCAAGGCGGCAGGGAGCAACTTATAGCTAGAAACGAAGGAAAAGGAGGAACAATAAGTGAGTTCGTTAACACCTACAATATCTACCACATGAGCTTCTTTTGTGGGAACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.33

Weight (kDa)

9.2

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 289
AciI CCGC 2 cut(s) 104, 354
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 144, 374, 441
AluI AGCT 3 cut(s) 144, 374, 441
Alw26I GTCTC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 61, 306
BbvI GCAGC 2 cut(s) 73, 318
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 375
BisI GCNGC 3 cut(s) 62, 307, 355
BlsI GCNGC 3 cut(s) 63, 308, 356
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 73, 318
Bsh1236I CGCG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 249
BsmI GAATGC 2 cut(s) 230, 341
BspACI CCGC 2 cut(s) 104, 354
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 17, 203
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 73, 318
BtgZI GCGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 304
CseI GACGC 1 cut(s) 278
CviAII CATG 2 cut(s) 161, 436
CviJI RGCY 6 cut(s) 64, 127, 144, 327, 374, 441
CviKI_1 RGCY 6 cut(s) 64, 127, 144, 327, 374, 441
DdeI CTNAG 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 2 cut(s) 164, 439
FatI CATG 2 cut(s) 160, 435
FauNDI CATATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 62, 307, 355
Fsp4HI GCNGC 3 cut(s) 62, 307, 355
FspBI CTAG 1 cut(s) 375
GluI GCNGC 3 cut(s) 62, 307, 355
HgaI GACGC 1 cut(s) 278
Hin1II CATG 2 cut(s) 164, 439
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 242
HpaI GTTAAC 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 286, 377
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 4, 91, 171, 197, 228, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 203
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 164, 439
KspAI GTTAAC 1 cut(s) 415
LmnI GCTCC 2 cut(s) 132, 361
LpnPI CCDG 3 cut(s) 261, 278, 343
Lsp1109I GCAGC 2 cut(s) 73, 318
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 1 cut(s) 262
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 3 cut(s) 75, 278, 386
Mph1103I ATGCAT 1 cut(s) 230
MseI TTAA 2 cut(s) 189, 414
Mva1269I GAATGC 2 cut(s) 230, 341
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 17, 203
NdeI CATATG 1 cut(s) 132
NlaIII CATG 2 cut(s) 164, 439
NlaIV GGNNCC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 230
PctI GAATGC 2 cut(s) 230, 341
PkrI GCNGC 3 cut(s) 63, 308, 356
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 189, 414
SatI GCNGC 3 cut(s) 62, 307, 355
SchI GAGTC 1 cut(s) 251
SetI ASST 6 cut(s) 10, 146, 235, 376, 422, 443
SfaNI GCATC 1 cut(s) 184
SsiI CCGC 2 cut(s) 104, 354
SspMI CTAG 1 cut(s) 375
TaiI ACGT 1 cut(s) 10
TauI GCSGC 1 cut(s) 357
Tru1I TTAA 2 cut(s) 189, 414
Tru9I TTAA 2 cut(s) 189, 414
TscAI CASTG 1 cut(s) 268
TseI GCWGC 2 cut(s) 61, 306
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 268
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.