Rroxscaffold_6G00406950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000267
Physical Location & Seq
Reverse (-)
29496977 .. 29497637
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406950.1

Sequence Viewer

Length: 540 bp
ATGTCACGGGTTGCCGGTGGACTTCGGATCCTATCCGGGCTGTTGCTTGATATAGCAGATCCGATCCGGTTATGGATTCCTAGATCCGTGAGACACGAGTTGTGGTGTGTTTGGCGGTGGAGCGATCAAATTGGTGGAATGCCGGTGGTGGAGCAACTGTTTTGGGCCTACCGGCTTGGCGGCATGTCGACGGTGGCACCCTATTGCAGGTGGTGGTGCGGCAAGGATTTTGGGTGGCCGGGGAGGCTGTACAAGAATTGGACCGGGCCCCGCATGTGGGTTGTGTTACCTTGCTACACGGGCTTGGGGTTAGTCGGAATTTATGCTCGTGTGTGCACTCAATGTGCCTTGTCCGCTCTTGGTAGGCGGCGAGTTCCTTGCTTTGTCAAATGGTCGTTACCTCCTAGTGGTAGGGTGAAACTTGGTGTCACTAGATGTATTGTACAGTGGCAACATGATGGGAAAGCTGTGAGAATGGATATTATGCTATGCTGTATTCGAGTTGCAGATCGAGTTATCTTTCCGTTATGTCATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.58

Weight (kDa)

9.98

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 188
AciI CCGC 6 cut(s) 115, 180, 219, 271, 354, 367
AclWI GGATC 5 cut(s) 22, 35, 53, 58, 78
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 2 cut(s) 251, 444
AfiI CCNNNNNNNGG 4 cut(s) 207, 276, 277, 407
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 85
Alw44I GTGCAC 1 cut(s) 334
AlwI GGATC 5 cut(s) 22, 35, 53, 58, 78
AoxI GGCC 3 cut(s) 165, 236, 266
ApaI GGGCCC 1 cut(s) 270
ApaLI GTGCAC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 4 cut(s) 165, 261, 266, 267
AsuC2I CCSGG 3 cut(s) 37, 240, 265
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 2 cut(s) 270, 338
BamHI GGATCC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 2 cut(s) 95, 327
Bbv12I GWGCWC 1 cut(s) 338
BccI CCATC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BcnI CCSGG 3 cut(s) 37, 240, 265
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 4 cut(s) 81, 405, 432, 538
BfuAI ACCTGC 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 244
BisI GCNGC 3 cut(s) 181, 220, 368
BlsI GCNGC 3 cut(s) 182, 221, 369
Bme1390I CCNGG 3 cut(s) 37, 240, 265
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 165, 261, 266, 267
BmiI GGNNCC 4 cut(s) 29, 198, 268, 269
BmrFI CCNGG 3 cut(s) 37, 240, 265
BpuMI CCSGG 3 cut(s) 37, 240, 265
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 276, 277, 407
Bse118I RCCGGY 3 cut(s) 14, 142, 171
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 4 cut(s) 207, 276, 277, 407
BseSI GKGCMC 2 cut(s) 270, 338
BshFI GGCC 3 cut(s) 167, 238, 268
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 7 cut(s) 15, 36, 67, 143, 172, 239, 264
BslI CCNNNNNNNGG 4 cut(s) 207, 276, 277, 407
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 3 cut(s) 167, 238, 268
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 270, 338
Bsp1407I TGTACA 2 cut(s) 249, 442
Bsp143I GATC 6 cut(s) 27, 58, 63, 83, 124, 508
BspACI CCGC 6 cut(s) 115, 180, 219, 271, 354, 367
BspANI GGCC 3 cut(s) 167, 238, 268
BspLI GGNNCC 4 cut(s) 29, 198, 268, 269
BspMI ACCTGC 1 cut(s) 198
BspPI GGATC 5 cut(s) 22, 35, 53, 58, 78
BspT107I GGYRCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 356
BsrFI RCCGGY 3 cut(s) 14, 142, 171
BsrGI TGTACA 2 cut(s) 249, 442
BssAI RCCGGY 3 cut(s) 14, 142, 171
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 6 cut(s) 27, 58, 63, 83, 124, 508
BssSI CACGAG 2 cut(s) 95, 327
Bst2BI CACGAG 2 cut(s) 95, 327
Bst4CI ACNGT 3 cut(s) 159, 193, 447
BstAUI TGTACA 2 cut(s) 249, 442
BstENI CCTNNNNNAGG 1 cut(s) 205
BstKTI GATC 6 cut(s) 30, 61, 66, 86, 127, 511
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 6 cut(s) 27, 58, 63, 83, 124, 508
BstMWI GCNNNNNNNGC 3 cut(s) 244, 300, 353
BstNSI RCATGY 2 cut(s) 187, 277
BstSCI CCNGG 3 cut(s) 35, 238, 263
BstSLI GKGCMC 2 cut(s) 270, 338
BstX2I RGATCY 3 cut(s) 27, 58, 83
BstYI RGATCY 3 cut(s) 27, 58, 83
BsuRI GGCC 3 cut(s) 167, 238, 268
BtgZI GCGATG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 452
BveI ACCTGC 1 cut(s) 198
Cfr10I RCCGGY 3 cut(s) 14, 142, 171
Cfr13I GGNCC 4 cut(s) 165, 261, 266, 267
Csp6I GTAC 2 cut(s) 250, 443
CviAII CATG 3 cut(s) 184, 274, 455
CviJI RGCY 8 cut(s) 40, 167, 175, 238, 247, 268, 303, 467
CviKI_1 RGCY 8 cut(s) 40, 167, 175, 238, 247, 268, 303, 467
CviQI GTAC 2 cut(s) 250, 443
DpnI GATC 6 cut(s) 29, 60, 65, 85, 126, 510
DpnII GATC 6 cut(s) 27, 58, 63, 83, 124, 508
EaeI YGGCCR 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 3 cut(s) 187, 277, 458
FaiI YATR 9 cut(s) 53, 73, 185, 275, 324, 456, 485, 490, 529
FatI CATG 3 cut(s) 183, 273, 454
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 181, 220, 368
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 3 cut(s) 181, 220, 368
FspBI CTAG 4 cut(s) 81, 405, 432, 538
GluI GCNGC 3 cut(s) 181, 220, 368
HaeIII GGCC 3 cut(s) 167, 238, 268
HapII CCGG 7 cut(s) 15, 36, 67, 143, 172, 239, 264
Hin1II CATG 3 cut(s) 187, 277, 458
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 1 cut(s) 76
HpaII CCGG 7 cut(s) 15, 36, 67, 143, 172, 239, 264
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 20, 189, 336
Hpy188I TCNGA 3 cut(s) 27, 63, 317
Hpy8I GTNNAC 3 cut(s) 20, 189, 336
Hpy99I CGWCG 1 cut(s) 193
HpyCH4III ACNGT 3 cut(s) 159, 193, 447
HpyCH4V TGCA 3 cut(s) 207, 336, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 300, 353
Hsp92II CATG 3 cut(s) 187, 277, 458
Kzo9I GATC 6 cut(s) 27, 58, 63, 83, 124, 508
LmnI GCTCC 2 cut(s) 120, 151
LpnPI CCDG 8 cut(s) 28, 49, 80, 156, 185, 193, 252, 277
MaeI CTAG 4 cut(s) 81, 405, 432, 538
MaeIII GTNAC 4 cut(s) 3, 285, 396, 427
MalI GATC 6 cut(s) 29, 60, 65, 85, 126, 510
MbiI CCGCTC 1 cut(s) 356
MboI GATC 6 cut(s) 27, 58, 63, 83, 124, 508
MflI RGATCY 3 cut(s) 27, 58, 83
MhlI GDGCHC 2 cut(s) 270, 338
MluCI AATT 3 cut(s) 129, 256, 318
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 2 cut(s) 237, 411
MspI CCGG 7 cut(s) 15, 36, 67, 143, 172, 239, 264
MspR9I CCNGG 3 cut(s) 37, 240, 265
Mva1269I GAATGC 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 244, 300, 353
NciI CCSGG 3 cut(s) 37, 240, 265
NdeII GATC 6 cut(s) 27, 58, 63, 83, 124, 508
NlaIII CATG 3 cut(s) 187, 277, 458
NlaIV GGNNCC 4 cut(s) 29, 198, 268, 269
NmuCI GTSAC 2 cut(s) 3, 427
NspI RCATGY 2 cut(s) 187, 277
PaqCI CACCTGC 1 cut(s) 198
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 182, 221, 369
PspN4I GGNNCC 4 cut(s) 29, 198, 268, 269
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 4 cut(s) 165, 261, 266, 267
PsuI RGATCY 3 cut(s) 27, 58, 83
RsaI GTAC 2 cut(s) 251, 444
RsaNI GTAC 2 cut(s) 250, 443
SalI GTCGAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 181, 220, 368
Sau3AI GATC 6 cut(s) 27, 58, 63, 83, 124, 508
Sau96I GGNCC 4 cut(s) 165, 261, 266, 267
ScrFI CCNGG 3 cut(s) 37, 240, 265
SduI GDGCHC 2 cut(s) 270, 338
SetI ASST 4 cut(s) 212, 292, 403, 469
SinI GGWCC 1 cut(s) 261
Sse9I AATT 3 cut(s) 129, 256, 318
SsiI CCGC 6 cut(s) 115, 180, 219, 271, 354, 367
SspMI CTAG 4 cut(s) 81, 405, 432, 538
StyD4I CCNGG 3 cut(s) 35, 238, 263
TaaI ACNGT 3 cut(s) 159, 193, 447
TaqI TCGA 3 cut(s) 188, 499, 511
TasI AATT 3 cut(s) 129, 256, 318
TatI WGTACW 2 cut(s) 249, 442
TauI GCSGC 3 cut(s) 183, 222, 370
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 2 cut(s) 3, 427
Tsp45I GTSAC 2 cut(s) 3, 427
TspGWI ACGGA 2 cut(s) 76, 513
TspRI CASTG 1 cut(s) 452
VneI GTGCAC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 205
XapI RAATTY 1 cut(s) 318
XceI RCATGY 2 cut(s) 187, 277
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 81, 405, 432, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.