RchiOBHm_Chr1g0319561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
7216446 .. 7216910
465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54980

Sequence Viewer

Length: 465 bp
ATGTTTCGTCTGGCGGCACGTCCTTGTGACGTCATCGCTGCTAGGGTTTTCTTATGGGCATTTTATTTCTTGTTTTTATTTTACTGCTTTGTGTTAGTAATAAATCCCTACTCTATACCAGTAGGGCGGGTTGGGCTTTTTGCTTTGGTGTGCACCCTCAGTGCCTTGTCTGCCCTAGAGAGAAGGCAAGTCTTTATCAAATGGGCACAACCTCCTAGTGGCAAGATGAAACAAAGTGTATTCAAAAGTTCTGGTCGAAAGCATGGTAGGAAAGCAGATTTTATTGTTTTATGGCTTCATATGAGCTTTATCTTTCCGATATGTCACTATTGTGAAGCAAATGGAGTTGCCCAGTTATCTAGTATGTCAACCCTTGCTAGTTGGTGCATGTTTGAATACATAAGATTAGTGGGAGTTCCTGTTATTATTCGGGATATTCTCTCGTTACAATTGTTCGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.57

Weight (kDa)

9.74

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AciI CCGC 2 cut(s) 14, 127
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 244, 395
AjiI CACGTC 1 cut(s) 20
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 155
Alw44I GTGCAC 1 cut(s) 151
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 155, 208
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 25
BfaI CTAG 5 cut(s) 42, 176, 216, 360, 378
BisI GCNGC 2 cut(s) 15, 39
BlsI GCNGC 2 cut(s) 16, 40
BmgBI CACGTC 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 119, 352
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 119, 352
BseSI GKGCMC 2 cut(s) 155, 208
BseXI GCAGC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 155, 208
BspACI CCGC 2 cut(s) 14, 127
BspCNI CTCAG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 119, 352
BssNI GRCGYC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 133, 170
BstNSI RCATGY 1 cut(s) 391
BstSLI GKGCMC 2 cut(s) 155, 208
BstV1I GCAGC 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 166
CviAII CATG 2 cut(s) 263, 388
CviJI RGCY 3 cut(s) 136, 295, 306
CviKI_1 RGCY 3 cut(s) 136, 295, 306
DdeI CTNAG 1 cut(s) 158
FaeI CATG 2 cut(s) 266, 391
FatI CATG 2 cut(s) 262, 387
FauI CCCGC 1 cut(s) 120
FauNDI CATATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 15, 39
Fsp4HI GCNGC 2 cut(s) 15, 39
FspBI CTAG 5 cut(s) 42, 176, 216, 360, 378
GluI GCNGC 2 cut(s) 15, 39
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 266, 391
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
Hpy166II GTNNAC 2 cut(s) 153, 369
Hpy188I TCNGA 2 cut(s) 318, 458
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 2 cut(s) 153, 369
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 2 cut(s) 19, 30
HpyCH4V TGCA 2 cut(s) 153, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 170
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 2 cut(s) 19, 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 266, 391
LpnPI CCDG 4 cut(s) 132, 237, 365, 432
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 5 cut(s) 42, 176, 216, 360, 378
MaeII ACGT 2 cut(s) 19, 30
MaeIII GTNAC 3 cut(s) 26, 323, 444
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 155, 208
MluCI AATT 1 cut(s) 449
MnlI CCTC 2 cut(s) 167, 222
MslI CAYNNNNRTG 1 cut(s) 330
MunI CAATTG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 133, 170
NdeI CATATG 1 cut(s) 300
NlaIII CATG 2 cut(s) 266, 391
NmuCI GTSAC 2 cut(s) 26, 323
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 330
PkrI GCNGC 2 cut(s) 16, 40
RseI CAYNNNNRTG 1 cut(s) 330
SatI GCNGC 2 cut(s) 15, 39
SduI GDGCHC 2 cut(s) 155, 208
SetI ASST 4 cut(s) 22, 33, 214, 308
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 1 cut(s) 449
SsiI CCGC 2 cut(s) 14, 127
SspMI CTAG 5 cut(s) 42, 176, 216, 360, 378
TaiI ACGT 2 cut(s) 22, 33
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 449
TauI GCSGC 1 cut(s) 17
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 26, 323
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 26, 323
TspDTI ATGAA 2 cut(s) 242, 287
TspRI CASTG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 151
XceI RCATGY 1 cut(s) 391
XspI CTAG 5 cut(s) 42, 176, 216, 360, 378
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.