Rw2G022850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000267
Physical Location & Seq
Forward (+)
32838136 .. 32839495
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G022850.1

Sequence Viewer

Length: 501 bp
ATGGGATGTGTCGTCGGAAGGGCGACTTTGTTATGTGAGTCCACTGGCGAGGGACAGTGGGTTTGGGGTAGGAGAAGGAGGCTAGGATTGCTTCTGTCGCAGTCGGAGACGGTCAGACAAGCAGAGGTGCACCTCCTTGGTCATTTCTATTTTGCGCAGAGGCGAAGGATCCGAGCAAGAGCAGAGCGGCGAAGGGTTTCTGATGTTCGATGGGGGCGATCTCAGTTCTCAGGGTGGATGATCGGCTCTGTTGCCCCTGTGATGGGGTTGAGCAAAGTTAACGGAGGTCGTGGTGATCGATCTGGTATTGGATATGATTTTTTCGTGAAATTGGAGTCCAATGCGATTCGCTCGGCGAAGTCTTTTGATGGTCAAGAAGCGGTGAGGCGACCGGATCCGCTGGAGGTTGAGACGCAGTCCCGGCAACACCGATGGGGATTTATTGATCTCGTGGCTGTTGACAACTATGCTATAGCCTACTGTGGTCATGGGATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

10.51

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 187
AciI CCGC 3 cut(s) 187, 380, 398
AclWI GGATC 4 cut(s) 163, 176, 389, 402
AfiI CCNNNNNNNGG 2 cut(s) 262, 263
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 101, 404
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 4 cut(s) 163, 176, 389, 402
ApaLI GTGCAC 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 305, 394
BaeGI GKGCMC 1 cut(s) 132
BamHI GGATCC 2 cut(s) 168, 394
BauI CACGAG 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 4 cut(s) 204, 256, 362, 426
BciVI GTATCC 1 cut(s) 486
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 101, 404
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 471
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 170, 396
BmrFI CCNGG 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 421
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 263
Bse1I ACTGG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 11, 243
BseLI CCNNNNNNNGG 2 cut(s) 262, 263
BseMII CTCAG 2 cut(s) 236, 243
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 392, 421
BslFI GGGAC 2 cut(s) 66, 403
BslI CCNNNNNNNGG 2 cut(s) 262, 263
BsmAI GTCTC 2 cut(s) 101, 404
BsmBI CGTCTC 2 cut(s) 101, 404
BsmFI GGGAC 2 cut(s) 66, 403
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
BspACI CCGC 3 cut(s) 187, 380, 398
BspCNI CTCAG 2 cut(s) 235, 242
BspDI ATCGAT 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 170, 396
BspPI GGATC 4 cut(s) 163, 176, 389, 402
BsrBI CCGCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 449
Bst4CI ACNGT 3 cut(s) 57, 112, 482
BstDEI CTNAG 2 cut(s) 222, 229
BstF5I GGATG 2 cut(s) 11, 243
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 7 cut(s) 171, 221, 243, 298, 302, 397, 448
BstMAI GTCTC 2 cut(s) 101, 404
BstMBI GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 3 cut(s) 88, 97, 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 168, 394
BstYI RGATCY 2 cut(s) 168, 394
Bsu15I ATCGAT 1 cut(s) 298
BsuI GTATCC 1 cut(s) 486
BsuTUI ATCGAT 1 cut(s) 298
BtsCI GGATG 2 cut(s) 11, 243
BtsIMutI CAGTG 2 cut(s) 42, 62
CfoI GCGC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 298
CseI GACGC 1 cut(s) 421
CviAII CATG 1 cut(s) 488
CviJI RGCY 4 cut(s) 82, 246, 455, 476
CviKI_1 RGCY 4 cut(s) 82, 246, 455, 476
DdeI CTNAG 2 cut(s) 222, 229
DpnI GATC 7 cut(s) 170, 220, 242, 297, 301, 396, 447
DpnII GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
Eco130I CCWWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 2 cut(s) 101, 404
FaeI CATG 1 cut(s) 491
FaiI YATR 5 cut(s) 34, 315, 468, 473, 489
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 66, 403
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 2 cut(s) 18, 250
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 83
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 422
HapII CCGG 2 cut(s) 392, 421
HgaI GACGC 1 cut(s) 421
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 491
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 2 cut(s) 280, 460
HindII GTYRAC 2 cut(s) 280, 460
HinfI GANTC 3 cut(s) 38, 335, 346
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 392, 421
HphI GGTGA 2 cut(s) 305, 394
Hpy166II GTNNAC 4 cut(s) 42, 130, 280, 460
Hpy188I TCNGA 6 cut(s) 17, 106, 116, 173, 202, 500
Hpy188III TCNNGA 2 cut(s) 325, 374
Hpy8I GTNNAC 4 cut(s) 42, 130, 280, 460
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 12, 69, 159, 186
HpyCH4III ACNGT 3 cut(s) 57, 112, 482
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 97, 421
HpyF3I CTNAG 2 cut(s) 222, 229
Hsp92II CATG 1 cut(s) 491
HspAI GCGC 1 cut(s) 155
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
LpnPI CCDG 7 cut(s) 30, 216, 270, 288, 386, 405, 434
MaeI CTAG 1 cut(s) 83
MalI GATC 7 cut(s) 170, 220, 242, 297, 301, 396, 447
MbiI CCGCTC 1 cut(s) 187
MboI GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
MflI RGATCY 2 cut(s) 168, 394
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 329
MlyI GAGTC 2 cut(s) 47, 344
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 8 cut(s) 43, 72, 118, 143, 153, 278, 378, 397
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 2 cut(s) 392, 421
MspR9I CCNGG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 88, 97, 421
NciI CCSGG 1 cut(s) 421
NdeII GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 2 cut(s) 170, 396
NmeAIII GCCGAG 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 2 cut(s) 214, 295
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 2 cut(s) 46, 343
PpsI GAGTC 2 cut(s) 46, 343
PspN4I GGNNCC 2 cut(s) 170, 396
PsuI RGATCY 2 cut(s) 168, 394
PsyI GACNNNGTC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 7 cut(s) 168, 218, 240, 295, 299, 394, 445
SchI GAGTC 2 cut(s) 47, 344
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 129, 135, 289, 408
SfcI CTRYAG 1 cut(s) 471
Sse9I AATT 1 cut(s) 329
SsiI CCGC 3 cut(s) 187, 380, 398
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 57, 112, 482
TaqI TCGA 2 cut(s) 208, 298
TasI AATT 1 cut(s) 329
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 49, 62
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 2 cut(s) 49, 62
Tth111I GACNNNGTC 1 cut(s) 415
VneI GTGCAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.