RchiOBHm_Chr2g0150711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Reverse (-)
68361976 .. 68362734
759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51996

Sequence Viewer

Length: 549 bp
ATGACGCAGGTTCGTTGGCAGTGGGAATGGAAGTCTGTTGTTCGTTGGCGGCAGAGTCGGTGCCGATATTGGAGGACTGCAAATGTGGAATTGGTTGGGGCCTTTAGAGTTTGGGCCGAGCTTAGGGAGTTGGGCCCTGGTTGGTGGGCTACTGTTTTTAGTTTAGGAGTACGAGGGCTTGGTTCCGGTATGTGCACTCTGTGTGCCTGGTCTGCTCTAAGTTGGTGGCGAGTTCCTTGCATTGGCAAATGGTCGCAACCTTTTAGTAGCAGTAATGTGTCTACTCTAGGCAGGCGGCGAGTTCCTTGCTTTGTGAAATGGTCGCTGCCTCCTAGTGGCAAGGTGAAACTTAGTGTCGCCGGATGTTTTATCCAGTGGCAACATAATGGAAAAGCTGTGAGTATGAGAATTATGCTAAGCTGTAATCGAGTTGCAGACCAAGTTATCTTTCCGTCGTGTCACCGCTGTGTGACTTATGTCAAAGCAAATAGAGTCGCCAGTGGAGCGTTCTTTGTTAGCTGGATGTTCTCTAGTTGCGTATTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.9

Weight (kDa)

10.68

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 281
AciI CCGC 3 cut(s) 49, 295, 463
AdeI CACNNNGTG 1 cut(s) 201
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 3 cut(s) 123, 242, 335
AjnI CCWGG 2 cut(s) 136, 206
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 4 cut(s) 121, 395, 420, 519
AluI AGCT 4 cut(s) 121, 395, 420, 519
Alw21I GWGCWC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 193
AoxI GGCC 3 cut(s) 99, 114, 133
ApaI GGGCCC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 99, 114, 133, 134
AsuHPI GGTGA 2 cut(s) 355, 452
BaeGI GKGCMC 2 cut(s) 137, 197
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 312
BcgI CGANNNNNNTGC 4 cut(s) 219, 253, 288, 322
BciT130I CCWGG 2 cut(s) 138, 208
BfaI CTAG 3 cut(s) 287, 333, 531
BisI GCNGC 3 cut(s) 50, 296, 326
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 3 cut(s) 51, 297, 327
Bme1390I CCNGG 2 cut(s) 138, 208
BmgT120I GGNCC 4 cut(s) 99, 114, 133, 134
BmiI GGNNCC 4 cut(s) 62, 100, 135, 184
BmrFI CCNGG 2 cut(s) 138, 208
BoxI GACNNNNGTC 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 242, 335
Bse1I ACTGG 2 cut(s) 373, 498
BseBI CCWGG 2 cut(s) 138, 208
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 368, 528
BseLI CCNNNNNNNGG 3 cut(s) 123, 242, 335
BseNI ACTGG 2 cut(s) 373, 498
BseSI GKGCMC 2 cut(s) 137, 197
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 3 cut(s) 101, 116, 135
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 186, 360
BslI CCNNNNNNNGG 3 cut(s) 123, 242, 335
BsnI GGCC 3 cut(s) 101, 116, 135
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 137, 197
Bsp1720I GCTNAGC 1 cut(s) 416
BspACI CCGC 3 cut(s) 49, 295, 463
BspANI GGCC 3 cut(s) 101, 116, 135
BspLI GGNNCC 4 cut(s) 62, 100, 135, 184
BspT107I GGYRCC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 373, 498
BssECI CCNNGG 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 138, 208
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 122, 218, 350, 416
BstF5I GGATG 2 cut(s) 368, 528
BstMWI GCNNNNNNNGC 2 cut(s) 212, 503
BstNI CCWGG 2 cut(s) 138, 208
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 136, 206
BstSLI GKGCMC 2 cut(s) 137, 197
BstV1I GCAGC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 101, 116, 135
BtsCI GGATG 2 cut(s) 368, 528
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 26, 380, 505
Cac8I GCNNGC 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 99, 114, 133, 134
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 170
CviJI RGCY 9 cut(s) 101, 116, 121, 135, 149, 178, 395, 420, 519
CviKI_1 RGCY 9 cut(s) 101, 116, 121, 135, 149, 178, 395, 420, 519
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 4 cut(s) 122, 218, 350, 416
DraIII CACNNNGTG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 137
EcoO109I RGGNCCY 2 cut(s) 99, 134
EcoRII CCWGG 2 cut(s) 136, 206
EcoT38I GRGCYC 1 cut(s) 137
FaiI YATR 5 cut(s) 191, 384, 404, 413, 477
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 50, 296, 326
FokI GGATG 2 cut(s) 375, 535
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 50, 296, 326
FspBI CTAG 3 cut(s) 287, 333, 531
GluI GCNGC 3 cut(s) 50, 296, 326
HaeIII GGCC 3 cut(s) 101, 116, 135
HapII CCGG 2 cut(s) 186, 360
HgaI GACGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 55, 492
HpaII CCGG 2 cut(s) 186, 360
HphI GGTGA 2 cut(s) 355, 452
Hpy166II GTNNAC 2 cut(s) 195, 282
Hpy8I GTNNAC 2 cut(s) 195, 282
Hpy99I CGWCG 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 80, 195, 240, 434, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 503
HpyF3I CTNAG 4 cut(s) 122, 218, 350, 416
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 3 cut(s) 287, 333, 531
MaeIII GTNAC 2 cut(s) 458, 469
MhlI GDGCHC 2 cut(s) 137, 197
MluCI AATT 2 cut(s) 89, 408
MlyI GAGTC 2 cut(s) 64, 501
MnlI CCTC 3 cut(s) 66, 167, 339
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 2 cut(s) 186, 360
MspR9I CCNGG 2 cut(s) 138, 208
MvaI CCWGG 2 cut(s) 138, 208
MwoI GCNNNNNNNGC 2 cut(s) 212, 503
NlaIV GGNNCC 4 cut(s) 62, 100, 135, 184
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 458, 469
OliI CACNNNNGTG 1 cut(s) 465
PkrI GCNGC 3 cut(s) 51, 297, 327
PleI GAGTC 2 cut(s) 63, 500
PpsI GAGTC 2 cut(s) 63, 500
PshAI GACNNNNGTC 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 136, 206
PspGI CCWGG 2 cut(s) 136, 206
PspN4I GGNNCC 4 cut(s) 62, 100, 135, 184
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 4 cut(s) 99, 114, 133, 134
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 465
SatI GCNGC 3 cut(s) 50, 296, 326
Sau96I GGNCC 4 cut(s) 99, 114, 133, 134
SchI GAGTC 2 cut(s) 64, 501
ScrFI CCNGG 2 cut(s) 138, 208
SduI GDGCHC 2 cut(s) 137, 197
SetI ASST 7 cut(s) 12, 123, 262, 345, 397, 422, 521
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 2 cut(s) 89, 408
SsiI CCGC 3 cut(s) 49, 295, 463
SspMI CTAG 3 cut(s) 287, 333, 531
StyD4I CCNGG 2 cut(s) 136, 206
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 427
TasI AATT 2 cut(s) 89, 408
TauI GCSGC 2 cut(s) 52, 298
TscAI CASTG 3 cut(s) 26, 380, 505
TseFI GTSAC 2 cut(s) 458, 469
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 2 cut(s) 458, 469
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 3 cut(s) 26, 380, 505
VneI GTGCAC 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 3 cut(s) 287, 333, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.