Belongs to the mitochondrial carrier (TC 2.A.29) family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPE65 | PF03055 | 1 - 430 | 5.7e-81 | Retinal pigment epithelial membrane protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 484 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 887 |
| AccI | GTMKAC | 1 cut(s) | 314 |
| AciI | CCGC | 1 cut(s) | 49 |
| AclWI | GGATC | 1 cut(s) | 804 |
| AcoI | YGGCCR | 5 cut(s) | 28, 43, 162, 229, 414 |
| AcsI | RAATTY | 1 cut(s) | 565 |
| AcuI | CTGAAG | 1 cut(s) | 1161 |
| AcyI | GRCGYC | 1 cut(s) | 485 |
| AfaI | GTAC | 3 cut(s) | 436, 596, 1085 |
| AfeI | AGCGCT | 1 cut(s) | 778 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 261, 481, 488, 887 |
| AflIII | ACRYGT | 2 cut(s) | 321, 951 |
| AgsI | TTSAA | 2 cut(s) | 23, 59 |
| AjnI | CCWGG | 4 cut(s) | 8, 430, 487, 792 |
| AleI | CACNNNNGTG | 1 cut(s) | 209 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1269 |
| AluBI | AGCT | 8 cut(s) | 77, 160, 185, 504, 650, 802, 1051, 1073 |
| AluI | AGCT | 8 cut(s) | 77, 160, 185, 504, 650, 802, 1051, 1073 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 774 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| AlwI | GGATC | 1 cut(s) | 804 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 817 |
| Ama87I | CYCGRG | 1 cut(s) | 403 |
| Aor51HI | AGCGCT | 1 cut(s) | 778 |
| AoxI | GGCC | 9 cut(s) | 28, 43, 162, 229, 414, 576, 624, 1122, 1255 |
| ApeKI | GCWGC | 6 cut(s) | 77, 182, 471, 914, 957, 1270 |
| ApoI | RAATTY | 1 cut(s) | 565 |
| AseI | ATTAAT | 1 cut(s) | 708 |
| AspA2I | CCTAGG | 1 cut(s) | 220 |
| AspLEI | GCGC | 6 cut(s) | 487, 751, 779, 1020, 1097, 1136 |
| AspS9I | GGNCC | 5 cut(s) | 214, 264, 479, 576, 1123 |
| AsuC2I | CCSGG | 5 cut(s) | 233, 281, 404, 405, 968 |
| AsuHPI | GGTGA | 7 cut(s) | 167, 238, 463, 523, 754, 845, 1171 |
| AsuII | TTCGAA | 1 cut(s) | 1224 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvaI | CYCGRG | 1 cut(s) | 403 |
| AvaII | GGWCC | 3 cut(s) | 214, 264, 479 |
| AvrII | CCTAGG | 1 cut(s) | 220 |
| BalI | TGGCCA | 2 cut(s) | 45, 164 |
| BanI | GGYRCC | 1 cut(s) | 484 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 831, 863 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 774 |
| BbvI | GCAGC | 6 cut(s) | 64, 194, 483, 926, 969, 1257 |
| BccI | CCATC | 8 cut(s) | 221, 418, 728, 881, 940, 1111, 1145, 1205 |
| BceAI | ACGGC | 5 cut(s) | 15, 43, 401, 529, 762 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 875, 909, 1214, 1248 |
| BciT130I | CCWGG | 4 cut(s) | 10, 432, 489, 794 |
| BciVI | GTATCC | 1 cut(s) | 801 |
| BclI | TGATCA | 1 cut(s) | 396 |
| BcnI | CCSGG | 5 cut(s) | 233, 281, 404, 405, 968 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BfaI | CTAG | 7 cut(s) | 5, 221, 651, 858, 908, 1208, 1236 |
| BfmI | CTRYAG | 1 cut(s) | 469 |
| BfoI | RGCGCY | 3 cut(s) | 488, 752, 780 |
| BfuI | GTATCC | 1 cut(s) | 801 |
| BisI | GCNGC | 6 cut(s) | 78, 183, 472, 915, 958, 1271 |
| BlnI | CCTAGG | 1 cut(s) | 220 |
| BlsI | GCNGC | 6 cut(s) | 79, 184, 473, 916, 959, 1272 |
| Bme1390I | CCNGG | 9 cut(s) | 10, 233, 281, 404, 405, 432, 489, 794, 968 |
| Bme18I | GGWCC | 3 cut(s) | 214, 264, 479 |
| BmeT110I | CYCGRG | 1 cut(s) | 403 |
| BmgT120I | GGNCC | 5 cut(s) | 214, 264, 479, 576, 1123 |
| BmiI | GGNNCC | 6 cut(s) | 14, 265, 429, 486, 1216, 1287 |
| BmrFI | CCNGG | 9 cut(s) | 10, 233, 281, 404, 405, 432, 489, 794, 968 |
| BmsI | GCATC | 4 cut(s) | 55, 619, 844, 1268 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| Bpu10I | CCTNAGC | 2 cut(s) | 572, 803 |
| Bpu14I | TTCGAA | 1 cut(s) | 1224 |
| BpuMI | CCSGG | 5 cut(s) | 233, 281, 404, 405, 968 |
| BsaHI | GRCGYC | 1 cut(s) | 485 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 5 cut(s) | 220, 403, 475, 488, 621 |
| BsaWI | WCCGGW | 1 cut(s) | 508 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 261, 481, 488, 887 |
| Bse1I | ACTGG | 1 cut(s) | 835 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 753 |
| BseBI | CCWGG | 4 cut(s) | 10, 432, 489, 794 |
| BseDI | CCNNGG | 5 cut(s) | 220, 403, 475, 488, 621 |
| BseGI | GGATG | 6 cut(s) | 349, 429, 610, 739, 951, 1283 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 261, 481, 488, 887 |
| BseMI | GCAATG | 2 cut(s) | 87, 753 |
| BseMII | CTCAG | 3 cut(s) | 129, 586, 606 |
| BseNI | ACTGG | 1 cut(s) | 835 |
| BseX3I | CGGCCG | 1 cut(s) | 28 |
| BseXI | GCAGC | 6 cut(s) | 64, 194, 483, 926, 969, 1257 |
| BseYI | CCCAGC | 2 cut(s) | 1130, 1281 |
| BsgI | GTGCAG | 3 cut(s) | 201, 579, 976 |
| Bsh1285I | CGRYCG | 1 cut(s) | 31 |
| BshFI | GGCC | 9 cut(s) | 30, 45, 164, 231, 416, 578, 626, 1124, 1257 |
| BshNI | GGYRCC | 1 cut(s) | 484 |
| BsiEI | CGRYCG | 1 cut(s) | 31 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 774 |
| BsiHKCI | CYCGRG | 1 cut(s) | 403 |
| BsiSI | CCGG | 6 cut(s) | 232, 281, 404, 482, 509, 968 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 261, 481, 488, 887 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsnI | GGCC | 9 cut(s) | 30, 45, 164, 231, 416, 578, 626, 1124, 1257 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| BsoBI | CYCGRG | 1 cut(s) | 403 |
| Bsp119I | TTCGAA | 1 cut(s) | 1224 |
| Bsp1286I | GDGCHC | 2 cut(s) | 522, 774 |
| Bsp1407I | TGTACA | 1 cut(s) | 594 |
| Bsp143I | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| BspACI | CCGC | 1 cut(s) | 49 |
| BspANI | GGCC | 9 cut(s) | 30, 45, 164, 231, 416, 578, 626, 1124, 1257 |
| BspCNI | CTCAG | 3 cut(s) | 128, 585, 607 |
| BspLI | GGNNCC | 6 cut(s) | 14, 265, 429, 486, 1216, 1287 |
| BspMAI | CTGCAG | 1 cut(s) | 473 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspPI | GGATC | 1 cut(s) | 804 |
| BspQI | GCTCTTC | 1 cut(s) | 80 |
| BspT104I | TTCGAA | 1 cut(s) | 1224 |
| BspT107I | GGYRCC | 1 cut(s) | 484 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BsrDI | GCAATG | 2 cut(s) | 87, 753 |
| BsrGI | TGTACA | 1 cut(s) | 594 |
| BsrI | ACTGG | 1 cut(s) | 835 |
| BssECI | CCNNGG | 5 cut(s) | 220, 403, 475, 488, 621 |
| BssMI | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| BssNAI | GTATAC | 1 cut(s) | 315 |
| BssNI | GRCGYC | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 3 cut(s) | 220, 475, 621 |
| Bst1107I | GTATAC | 1 cut(s) | 315 |
| Bst2UI | CCWGG | 4 cut(s) | 10, 432, 489, 794 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| Bst6I | CTCTTC | 3 cut(s) | 80, 714, 1221 |
| BstACI | GRCGYC | 1 cut(s) | 485 |
| BstAUI | TGTACA | 1 cut(s) | 594 |
| BstBI | TTCGAA | 1 cut(s) | 1224 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 43, 162, 636, 770 |
| BstDEI | CTNAG | 5 cut(s) | 115, 572, 615, 803, 1074 |
| BstEII | GGTNACC | 1 cut(s) | 511 |
| BstF5I | GGATG | 6 cut(s) | 349, 429, 610, 739, 951, 1283 |
| BstH2I | RGCGCY | 3 cut(s) | 488, 752, 780 |
| BstHHI | GCGC | 6 cut(s) | 487, 751, 779, 1020, 1097, 1136 |
| BstKTI | GATC | 5 cut(s) | 39, 399, 456, 799, 1164 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| BstMCI | CGRYCG | 1 cut(s) | 31 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 74, 541, 755, 774, 1010, 1048 |
| BstNI | CCWGG | 4 cut(s) | 10, 432, 489, 794 |
| BstNSI | RCATGY | 2 cut(s) | 638, 955 |
| BstPI | GGTNACC | 1 cut(s) | 511 |
| BstSCI | CCNGG | 9 cut(s) | 8, 231, 279, 402, 403, 430, 487, 792, 966 |
| BstSFI | CTRYAG | 1 cut(s) | 469 |
| BstV1I | GCAGC | 6 cut(s) | 64, 194, 483, 926, 969, 1257 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 793 |
| BstZ17I | GTATAC | 1 cut(s) | 315 |
| BstZI | CGGCCG | 1 cut(s) | 28 |
| BsuI | GTATCC | 1 cut(s) | 801 |
| BsuRI | GGCC | 9 cut(s) | 30, 45, 164, 231, 416, 578, 626, 1124, 1257 |
| BtsCI | GGATG | 6 cut(s) | 349, 429, 610, 739, 951, 1283 |
| BtsI | GCAGTG | 1 cut(s) | 1104 |
| BtsIMutI | CAGTG | 1 cut(s) | 1104 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 43, 162, 636, 770 |
| CaiI | CAGNNNCTG | 1 cut(s) | 817 |
| CfoI | GCGC | 6 cut(s) | 487, 751, 779, 1020, 1097, 1136 |
| Cfr13I | GGNCC | 5 cut(s) | 214, 264, 479, 576, 1123 |
| Cfr9I | CCCGGG | 1 cut(s) | 403 |
| Csp6I | GTAC | 3 cut(s) | 435, 595, 1084 |
| CviAII | CATG | 5 cut(s) | 635, 640, 935, 952, 1274 |
| CviQI | GTAC | 3 cut(s) | 435, 595, 1084 |
| DdeI | CTNAG | 5 cut(s) | 115, 572, 615, 803, 1074 |
| DinI | GGCGCC | 1 cut(s) | 486 |
| DpnI | GATC | 5 cut(s) | 38, 398, 455, 798, 1163 |
| DpnII | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| EaeI | YGGCCR | 5 cut(s) | 28, 43, 162, 229, 414 |
| EagI | CGGCCG | 1 cut(s) | 28 |
| Eam1104I | CTCTTC | 3 cut(s) | 80, 714, 1221 |
| EarI | CTCTTC | 3 cut(s) | 80, 714, 1221 |
| EclXI | CGGCCG | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 3 cut(s) | 220, 475, 621 |
| Eco147I | AGGCCT | 1 cut(s) | 626 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| Eco47I | GGWCC | 3 cut(s) | 214, 264, 479 |
| Eco47III | AGCGCT | 1 cut(s) | 778 |
| Eco52I | CGGCCG | 1 cut(s) | 28 |
| Eco57I | CTGAAG | 1 cut(s) | 1161 |
| Eco88I | CYCGRG | 1 cut(s) | 403 |
| Eco91I | GGTNACC | 1 cut(s) | 511 |
| EcoO65I | GGTNACC | 1 cut(s) | 511 |
| EcoRII | CCWGG | 4 cut(s) | 8, 430, 487, 792 |
| EcoT14I | CCWWGG | 3 cut(s) | 220, 475, 621 |
| EcoT22I | ATGCAT | 1 cut(s) | 636 |
| EgeI | GGCGCC | 1 cut(s) | 486 |
| EheI | GGCGCC | 1 cut(s) | 486 |
| ErhI | CCWWGG | 3 cut(s) | 220, 475, 621 |
| FaeI | CATG | 5 cut(s) | 638, 643, 938, 955, 1277 |
| FatI | CATG | 5 cut(s) | 634, 639, 934, 951, 1273 |
| FauNDI | CATATG | 2 cut(s) | 898, 1264 |
| FbaI | TGATCA | 1 cut(s) | 396 |
| FblI | GTMKAC | 1 cut(s) | 314 |
| Fnu4HI | GCNGC | 6 cut(s) | 78, 183, 472, 915, 958, 1271 |
| FokI | GGATG | 6 cut(s) | 336, 436, 597, 746, 958, 1290 |
| Fsp4HI | GCNGC | 6 cut(s) | 78, 183, 472, 915, 958, 1271 |
| FspBI | CTAG | 7 cut(s) | 5, 221, 651, 858, 908, 1208, 1236 |
| GlaI | GCGC | 6 cut(s) | 486, 750, 778, 1019, 1096, 1135 |
| GluI | GCNGC | 6 cut(s) | 78, 183, 472, 915, 958, 1271 |
| GsaI | CCCAGC | 2 cut(s) | 1134, 1285 |
| HaeII | RGCGCY | 3 cut(s) | 488, 752, 780 |
| HaeIII | GGCC | 9 cut(s) | 30, 45, 164, 231, 416, 578, 626, 1124, 1257 |
| HapII | CCGG | 6 cut(s) | 232, 281, 404, 482, 509, 968 |
| HhaI | GCGC | 6 cut(s) | 487, 751, 779, 1020, 1097, 1136 |
| Hin1I | GRCGYC | 1 cut(s) | 485 |
| Hin1II | CATG | 5 cut(s) | 638, 643, 938, 955, 1277 |
| Hin6I | GCGC | 6 cut(s) | 485, 749, 777, 1018, 1095, 1134 |
| HinP1I | GCGC | 6 cut(s) | 485, 749, 777, 1018, 1095, 1134 |
| HincII | GTYRAC | 2 cut(s) | 277, 466 |
| HindII | GTYRAC | 2 cut(s) | 277, 466 |
| HindIII | AAGCTT | 1 cut(s) | 1049 |
| HinfI | GANTC | 6 cut(s) | 59, 306, 337, 365, 617, 814 |
| HpaII | CCGG | 6 cut(s) | 232, 281, 404, 482, 509, 968 |
| HphI | GGTGA | 7 cut(s) | 167, 238, 463, 523, 754, 845, 1171 |
| Hpy166II | GTNNAC | 4 cut(s) | 217, 277, 315, 466 |
| Hpy188I | TCNGA | 6 cut(s) | 36, 64, 118, 189, 370, 1108 |
| Hpy188III | TCNNGA | 4 cut(s) | 376, 457, 614, 1165 |
| Hpy8I | GTNNAC | 4 cut(s) | 217, 277, 315, 466 |
| HpyAV | CCTTC | 2 cut(s) | 861, 1268 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4IV | ACGT | 2 cut(s) | 323, 1220 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 74, 541, 755, 774, 1010, 1048 |
| HpyF3I | CTNAG | 5 cut(s) | 115, 572, 615, 803, 1074 |
| HpySE526I | ACGT | 2 cut(s) | 323, 1220 |
| Hsp92I | GRCGYC | 1 cut(s) | 485 |
| Hsp92II | CATG | 5 cut(s) | 638, 643, 938, 955, 1277 |
| HspAI | GCGC | 6 cut(s) | 485, 749, 777, 1018, 1095, 1134 |
| KasI | GGCGCC | 1 cut(s) | 484 |
| Ksp22I | TGATCA | 1 cut(s) | 396 |
| Kzo9I | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| LguI | GCTCTTC | 1 cut(s) | 80 |
| LmnI | GCTCC | 2 cut(s) | 18, 427 |
| Lsp1109I | GCAGC | 6 cut(s) | 64, 194, 483, 926, 969, 1257 |
| LweI | GCATC | 4 cut(s) | 55, 619, 844, 1268 |
| MaeI | CTAG | 7 cut(s) | 5, 221, 651, 858, 908, 1208, 1236 |
| MaeII | ACGT | 2 cut(s) | 323, 1220 |
| MaeIII | GTNAC | 5 cut(s) | 358, 407, 511, 691, 742 |
| MalI | GATC | 5 cut(s) | 38, 398, 455, 798, 1163 |
| MboI | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| MboII | GAAGA | 9 cut(s) | 97, 315, 731, 848, 851, 1078, 1154, 1157, 1238 |
| MhlI | GDGCHC | 2 cut(s) | 522, 774 |
| MlsI | TGGCCA | 2 cut(s) | 45, 164 |
| MluCI | AATT | 5 cut(s) | 136, 528, 565, 660, 1078 |
| MluNI | TGGCCA | 2 cut(s) | 45, 164 |
| Mly113I | GGCGCC | 1 cut(s) | 485 |
| MlyI | GAGTC | 2 cut(s) | 374, 626 |
| MmeI | TCCRAC | 1 cut(s) | 844 |
| Mox20I | TGGCCA | 2 cut(s) | 45, 164 |
| Mph1103I | ATGCAT | 1 cut(s) | 636 |
| MscI | TGGCCA | 2 cut(s) | 45, 164 |
| MseI | TTAA | 1 cut(s) | 708 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 530 |
| Msp20I | TGGCCA | 2 cut(s) | 45, 164 |
| MspI | CCGG | 6 cut(s) | 232, 281, 404, 482, 509, 968 |
| MspR9I | CCNGG | 9 cut(s) | 10, 233, 281, 404, 405, 432, 489, 794, 968 |
| MvaI | CCWGG | 4 cut(s) | 10, 432, 489, 794 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 74, 541, 755, 774, 1010, 1048 |
| NarI | GGCGCC | 1 cut(s) | 485 |
| NciI | CCSGG | 5 cut(s) | 233, 281, 404, 405, 968 |
| NdeI | CATATG | 2 cut(s) | 898, 1264 |
| NdeII | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 5 cut(s) | 638, 643, 938, 955, 1277 |
| NlaIV | GGNNCC | 6 cut(s) | 14, 265, 429, 486, 1216, 1287 |
| NmeAIII | GCCGAG | 1 cut(s) | 323 |
| NmuCI | GTSAC | 3 cut(s) | 358, 511, 742 |
| NsiI | ATGCAT | 1 cut(s) | 636 |
| NspI | RCATGY | 2 cut(s) | 638, 955 |
| NspV | TTCGAA | 1 cut(s) | 1224 |
| OliI | CACNNNNGTG | 1 cut(s) | 209 |
| PaeI | GCATGC | 1 cut(s) | 638 |
| PceI | AGGCCT | 1 cut(s) | 626 |
| PciI | ACATGT | 1 cut(s) | 951 |
| PciSI | GCTCTTC | 1 cut(s) | 80 |
| PfeI | GAWTC | 4 cut(s) | 59, 306, 337, 814 |
| PflFI | GACNNNGTC | 1 cut(s) | 364 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 887 |
| PfoI | TCCNGGA | 1 cut(s) | 792 |
| PkrI | GCNGC | 6 cut(s) | 79, 184, 473, 916, 959, 1272 |
| PleI | GAGTC | 2 cut(s) | 373, 625 |
| PluTI | GGCGCC | 1 cut(s) | 488 |
| PpsI | GAGTC | 2 cut(s) | 373, 625 |
| PscI | ACATGT | 1 cut(s) | 951 |
| PshBI | ATTAAT | 1 cut(s) | 708 |
| Psp6I | CCWGG | 4 cut(s) | 8, 430, 487, 792 |
| PspEI | GGTNACC | 1 cut(s) | 511 |
| PspFI | CCCAGC | 2 cut(s) | 1130, 1281 |
| PspGI | CCWGG | 4 cut(s) | 8, 430, 487, 792 |
| PspN4I | GGNNCC | 6 cut(s) | 14, 265, 429, 486, 1216, 1287 |
| PspPI | GGNCC | 5 cut(s) | 214, 264, 479, 576, 1123 |
| PstI | CTGCAG | 1 cut(s) | 473 |
| PstNI | CAGNNNCTG | 1 cut(s) | 817 |
| PsyI | GACNNNGTC | 1 cut(s) | 364 |
| RsaI | GTAC | 3 cut(s) | 436, 596, 1085 |
| RsaNI | GTAC | 3 cut(s) | 435, 595, 1084 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 530 |
| SapI | GCTCTTC | 1 cut(s) | 80 |
| SaqAI | TTAA | 1 cut(s) | 708 |
| SatI | GCNGC | 6 cut(s) | 78, 183, 472, 915, 958, 1271 |
| Sau3AI | GATC | 5 cut(s) | 36, 396, 453, 796, 1161 |
| Sau96I | GGNCC | 5 cut(s) | 214, 264, 479, 576, 1123 |
| SchI | GAGTC | 2 cut(s) | 374, 626 |
| ScrFI | CCNGG | 9 cut(s) | 10, 233, 281, 404, 405, 432, 489, 794, 968 |
| SduI | GDGCHC | 2 cut(s) | 522, 774 |
| SfaNI | GCATC | 4 cut(s) | 55, 619, 844, 1268 |
| SfcI | CTRYAG | 1 cut(s) | 469 |
| SfoI | GGCGCC | 1 cut(s) | 486 |
| SfuI | TTCGAA | 1 cut(s) | 1224 |
| SinI | GGWCC | 3 cut(s) | 214, 264, 479 |
| SmaI | CCCGGG | 1 cut(s) | 405 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 530 |
| SphI | GCATGC | 1 cut(s) | 638 |
| Sse9I | AATT | 5 cut(s) | 136, 528, 565, 660, 1078 |
| SseBI | AGGCCT | 1 cut(s) | 626 |
| SsiI | CCGC | 1 cut(s) | 49 |
| SspDI | GGCGCC | 1 cut(s) | 484 |
| SspMI | CTAG | 7 cut(s) | 5, 221, 651, 858, 908, 1208, 1236 |
| StuI | AGGCCT | 1 cut(s) | 626 |
| StyD4I | CCNGG | 9 cut(s) | 8, 231, 279, 402, 403, 430, 487, 792, 966 |
| StyI | CCWWGG | 3 cut(s) | 220, 475, 621 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TaiI | ACGT | 2 cut(s) | 326, 1223 |
| TaqI | TCGA | 4 cut(s) | 309, 885, 1166, 1224 |
| TaqII | GACCGA | 2 cut(s) | 206, 530 |
| TasI | AATT | 5 cut(s) | 136, 528, 565, 660, 1078 |
| TatI | WGTACW | 1 cut(s) | 594 |
| TfiI | GAWTC | 4 cut(s) | 59, 306, 337, 814 |
| Tru1I | TTAA | 1 cut(s) | 708 |
| Tru9I | TTAA | 1 cut(s) | 708 |
| TscAI | CASTG | 1 cut(s) | 1104 |
| TseFI | GTSAC | 3 cut(s) | 358, 511, 742 |
| TseI | GCWGC | 6 cut(s) | 77, 182, 471, 914, 957, 1270 |
| Tsp45I | GTSAC | 3 cut(s) | 358, 511, 742 |
| TspDTI | ATGAA | 7 cut(s) | 98, 456, 488, 694, 732, 813, 945 |
| TspMI | CCCGGG | 1 cut(s) | 403 |
| TspRI | CASTG | 1 cut(s) | 1104 |
| Tth111I | GACNNNGTC | 1 cut(s) | 364 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 887 |
| VpaK11BI | GGWCC | 3 cut(s) | 214, 264, 479 |
| VspI | ATTAAT | 1 cut(s) | 708 |
| XapI | RAATTY | 1 cut(s) | 565 |
| XceI | RCATGY | 2 cut(s) | 638, 955 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 208, 224 |
| XmaI | CCCGGG | 1 cut(s) | 403 |
| XmaJI | CCTAGG | 1 cut(s) | 220 |
| XmiI | GTMKAC | 1 cut(s) | 314 |
| XspI | CTAG | 7 cut(s) | 5, 221, 651, 858, 908, 1208, 1236 |
| Zsp2I | ATGCAT | 1 cut(s) | 636 |