RchiOBHm_Chr1g0358041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Forward (+)
50189828 .. 50191079
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58323

Sequence Viewer

Length: 933 bp
ATGAGGATGGAGGCTAGCGGCGAGGCTCTATGGCGGGGATCTGGCTCAGGGATGGAGGTTGGCAGCTTCTACTTGGATCGGGGCGGAGATTCCAGATCGGTTTCGTCTCTTCGTCGATCGTGGGTGGGAGCTGGCACGGATTTCCGGCGTGGTGCGATCTGCCGGCGGGGCTCGATCTGCCGGTTGCTGCAGGTGTCTGGGCCAAGGCTGGTTTCTTGGCGGTGGTTGGGTTCTCGATTTCATGGAAGTGACGAGCTTCTCGGAGTTAGATCTCGGACGCCGGCCAGGATCTCGTGTGGTTGTCTTTGTGGTGTGTCGTTGCAGTTGTGGCGGCGGGGCAGTACAAGGTGGGAGGATGGCGGAGGGTGCAGGTACGGGCGGCTGCCATGGTGGATCGCGGTGAGGCCTTGGTGGATGGCGGCGCTGGAGTCATGTGGGAAGTGGTGGTTGGGCCGGTCTTTGTTGTTTGGGCCTGGCTATCTGGGCCTCCTTTTGTTTTTGGGAGCAATAAGTCCCTGCATTCGTGGTGTAGGGCTAGTCGGGCCTTGTGCCTGTGGGTGCACTCATTGTGCCTTGTCTGCTCTAGGGTGGCAGCGAGTTCCTTGCTTTGTCAAATGGTCGCTGCCTCCTAGTGGCAGGATGAAACTTGGTGCCACTGGAGGTATTTTCCGGTGGCAACATGATAGGAAAGCTGTGAGAATGGTTTTTATGCTTGGCTGTATTAGATTTGCAGATCCAGTCTTCTTTCCGTTGTGTCACTGTTGGGAAGCAAATAGAACCGTCAGGAGCGTGTTCTTTGCTAGTTGGTGCGATTTTGAATACAATTGTTTAGTAGAGTCTGTTGATAGTTGTTCGGGATGTACTCTAGGTGTCTATTGTAATCTGGGGTTTAGGCTCTTTGTCCCCCCTTGTATTCGACGGTTTCATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.65

Weight (kDa)

9.66

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 2 cut(s) 181, 360
AccB1I GGYRCC 1 cut(s) 650
AccII CGCG 1 cut(s) 398
AclWI GGATC 5 cut(s) 46, 84, 296, 401, 728
AcoI YGGCCR 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 3 cut(s) 343, 374, 862
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 1 cut(s) 818
AjnI CCWGG 2 cut(s) 284, 472
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 431, 463
AluBI AGCT 4 cut(s) 66, 131, 256, 692
AluI AGCT 4 cut(s) 66, 131, 256, 692
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 559
AlwI GGATC 5 cut(s) 46, 84, 296, 401, 728
AoxI GGCC 7 cut(s) 200, 282, 404, 451, 470, 484, 542
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 5 cut(s) 63, 187, 382, 592, 622
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 5 cut(s) 200, 451, 470, 484, 542
AsuHPI GGTGA 1 cut(s) 412
AsuNHI GCTAGC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 563
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 173
BauI CACGAG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 5 cut(s) 75, 174, 369, 604, 609
BccI CCATC 3 cut(s) 46, 350, 409
BcgI CGANNNNNNTGC 2 cut(s) 585, 619
BciT130I CCWGG 2 cut(s) 286, 474
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 6 cut(s) 15, 536, 584, 630, 801, 866
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 181, 360
BglI GCCNNNNNGGC 1 cut(s) 168
BglII AGATCT 1 cut(s) 269
BisI GCNGC 9 cut(s) 19, 64, 188, 332, 380, 383, 420, 593, 623
BlsI GCNGC 9 cut(s) 20, 65, 189, 333, 381, 384, 421, 594, 624
Bme1390I CCNGG 2 cut(s) 286, 474
BmgT120I GGNCC 5 cut(s) 200, 451, 470, 484, 542
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 2 cut(s) 286, 474
BmtI GCTAGC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 733
BpmI CTGGAG 2 cut(s) 446, 678
Bpu10I CCTNAGC 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 203, 386, 407
BsaWI WCCGGW 1 cut(s) 669
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 4 cut(s) 162, 180, 280, 453
Bse1I ACTGG 2 cut(s) 661, 737
BseBI CCWGG 2 cut(s) 286, 474
BseDI CCNNGG 3 cut(s) 203, 386, 407
BseGI GGATG 6 cut(s) 12, 57, 361, 420, 645, 863
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 661, 737
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 5 cut(s) 75, 174, 369, 604, 609
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 7 cut(s) 202, 284, 406, 453, 472, 486, 544
BshNI GGYRCC 1 cut(s) 650
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 6 cut(s) 145, 163, 181, 281, 454, 670
BslFI GGGAC 2 cut(s) 498, 887
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 498, 887
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 7 cut(s) 202, 284, 406, 453, 472, 486, 544
Bsp1286I GDGCHC 2 cut(s) 173, 563
Bsp19I CCATGG 1 cut(s) 386
BspANI GGCC 7 cut(s) 202, 284, 406, 453, 472, 486, 544
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 652
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 2 cut(s) 181, 360
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 5 cut(s) 46, 84, 296, 401, 728
BspT107I GGYRCC 1 cut(s) 650
BsrFI RCCGGY 4 cut(s) 162, 180, 280, 453
BsrI ACTGG 2 cut(s) 661, 737
BssAI RCCGGY 4 cut(s) 162, 180, 280, 453
BssECI CCNNGG 3 cut(s) 203, 386, 407
BssNI GRCGYC 1 cut(s) 278
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 3 cut(s) 203, 386, 407
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 286, 474
Bst4CI ACNGT 3 cut(s) 761, 781, 921
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 4 cut(s) 16, 133, 164, 282
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 6 cut(s) 12, 57, 361, 420, 645, 863
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 111
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 7 cut(s) 168, 177, 328, 366, 483, 541, 578
BstNI CCWGG 2 cut(s) 286, 474
BstSCI CCNGG 2 cut(s) 284, 472
BstSFI CTRYAG 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 75, 174, 369, 604, 609
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 4 cut(s) 38, 269, 288, 733
BstYI RGATCY 4 cut(s) 38, 269, 288, 733
BsuRI GGCC 7 cut(s) 202, 284, 406, 453, 472, 486, 544
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 6 cut(s) 12, 57, 361, 420, 645, 863
BtsIMutI CAGTG 2 cut(s) 654, 757
BveI ACCTGC 2 cut(s) 181, 360
Cac8I GCNNGC 4 cut(s) 16, 133, 164, 282
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 4 cut(s) 162, 180, 280, 453
Cfr13I GGNCC 5 cut(s) 200, 451, 470, 484, 542
CseI GACGC 1 cut(s) 286
Csp6I GTAC 3 cut(s) 342, 373, 861
CviAII CATG 4 cut(s) 242, 387, 432, 680
CviQI GTAC 3 cut(s) 342, 373, 861
DdeI CTNAG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 2 cut(s) 99, 375
Eco130I CCWWGG 3 cut(s) 203, 386, 407
Eco147I AGGCCT 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 284, 472
EcoT14I CCWWGG 3 cut(s) 203, 386, 407
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 3 cut(s) 203, 386, 407
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 245, 390, 435, 683
FaiI YATR 7 cut(s) 31, 243, 388, 433, 681, 710, 931
FaqI GGGAC 2 cut(s) 498, 887
FatI CATG 4 cut(s) 241, 386, 431, 679
FauI CCCGC 3 cut(s) 27, 159, 327
Fnu4HI GCNGC 9 cut(s) 19, 64, 188, 332, 380, 383, 420, 593, 623
FokI GGATG 6 cut(s) 19, 64, 368, 427, 652, 870
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 9 cut(s) 19, 64, 188, 332, 380, 383, 420, 593, 623
FspBI CTAG 6 cut(s) 15, 536, 584, 630, 801, 866
GlaI GCGC 1 cut(s) 423
GluI GCNGC 9 cut(s) 19, 64, 188, 332, 380, 383, 420, 593, 623
GsuI CTGGAG 2 cut(s) 446, 678
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 7 cut(s) 202, 284, 406, 453, 472, 486, 544
HapII CCGG 6 cut(s) 145, 163, 181, 281, 454, 670
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 4 cut(s) 245, 390, 435, 683
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 3 cut(s) 89, 428, 836
HpaII CCGG 6 cut(s) 145, 163, 181, 281, 454, 670
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 2 cut(s) 263, 276
Hpy188III TCNNGA 4 cut(s) 93, 234, 784, 855
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 2 cut(s) 117, 921
HpyCH4III ACNGT 3 cut(s) 761, 781, 921
HpyCH4V TGCA 6 cut(s) 190, 322, 369, 519, 561, 731
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 177, 328, 366, 483, 541, 578
HpyF3I CTNAG 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 4 cut(s) 245, 390, 435, 683
HspAI GCGC 1 cut(s) 422
KroI GCCGGC 2 cut(s) 162, 280
KroNI GCCGGC 2 cut(s) 164, 282
LmnI GCTCC 3 cut(s) 128, 503, 786
Lsp1109I GCAGC 5 cut(s) 75, 174, 369, 604, 609
MaeI CTAG 6 cut(s) 15, 536, 584, 630, 801, 866
MaeIII GTNAC 2 cut(s) 248, 755
MboII GAAGA 2 cut(s) 101, 733
MfeI CAATTG 1 cut(s) 823
MflI RGATCY 4 cut(s) 38, 269, 288, 733
MhlI GDGCHC 2 cut(s) 173, 563
MluCI AATT 1 cut(s) 823
MlyI GAGTC 2 cut(s) 437, 845
MnlI CCTC 9 cut(s) 4, 16, 49, 346, 356, 396, 497, 636, 653
MroNI GCCGGC 2 cut(s) 162, 280
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 6 cut(s) 145, 163, 181, 281, 454, 670
MspR9I CCNGG 2 cut(s) 286, 474
MunI CAATTG 1 cut(s) 823
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 2 cut(s) 286, 474
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 7 cut(s) 168, 177, 328, 366, 483, 541, 578
NaeI GCCGGC 2 cut(s) 164, 282
NcoI CCATGG 1 cut(s) 386
NgoMIV GCCGGC 2 cut(s) 162, 280
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 4 cut(s) 245, 390, 435, 683
NlaIV GGNNCC 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 248, 755
PaqCI CACCTGC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 406
PctI GAATGC 1 cut(s) 519
PdiI GCCGGC 2 cut(s) 164, 282
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 9 cut(s) 20, 65, 189, 333, 381, 384, 421, 594, 624
Ple19I CGATCG 1 cut(s) 119
PleI GAGTC 2 cut(s) 436, 844
PpsI GAGTC 2 cut(s) 436, 844
Psp6I CCWGG 2 cut(s) 284, 472
PspGI CCWGG 2 cut(s) 284, 472
PspN4I GGNNCC 1 cut(s) 652
PspPI GGNCC 5 cut(s) 200, 451, 470, 484, 542
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 4 cut(s) 38, 269, 288, 733
PvuI CGATCG 1 cut(s) 119
RsaI GTAC 3 cut(s) 343, 374, 862
RsaNI GTAC 3 cut(s) 342, 373, 861
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 9 cut(s) 19, 64, 188, 332, 380, 383, 420, 593, 623
Sau96I GGNCC 5 cut(s) 200, 451, 470, 484, 542
SchI GAGTC 2 cut(s) 437, 845
ScrFI CCNGG 2 cut(s) 286, 474
SduI GDGCHC 2 cut(s) 173, 563
SfcI CTRYAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 1 cut(s) 823
SseBI AGGCCT 1 cut(s) 406
SspMI CTAG 6 cut(s) 15, 536, 584, 630, 801, 866
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 284, 472
StyI CCWWGG 3 cut(s) 203, 386, 407
TaaI ACNGT 3 cut(s) 761, 781, 921
TaqI TCGA 4 cut(s) 115, 173, 235, 916
TasI AATT 1 cut(s) 823
TatI WGTACW 2 cut(s) 341, 860
TauI GCSGC 4 cut(s) 21, 334, 382, 422
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 661, 764
TseFI GTSAC 2 cut(s) 248, 755
TseI GCWGC 5 cut(s) 63, 187, 382, 592, 622
Tsp45I GTSAC 2 cut(s) 248, 755
TspDTI ATGAA 3 cut(s) 230, 656, 914
TspGWI ACGGA 2 cut(s) 152, 738
TspRI CASTG 2 cut(s) 661, 764
VneI GTGCAC 1 cut(s) 559
XspI CTAG 6 cut(s) 15, 536, 584, 630, 801, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.