RchiOBHm_Chr2g0119361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Reverse (-)
31745191 .. 31746144
954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49210

Sequence Viewer

Length: 954 bp
ATGCGAATCCGATCCGGGTTCTGGATGTGTGATTGGATCCATTCGGATCTTGTTGCAGATCCACTGGTGGTTGGTTGCTGTGTGATTCCGAACCTTGTCCTAGGTGGCTCGACGGCGGCGTTGGCTAGGATTTTTCCTCGGGCGGGCGGCGGTGCGATTGGGGACGGCGACGGAGGGAGTGGTGTCGATCTCCTTTCTGGAAGGGTGCTCACGAGGTGTGGGATGTTGGTGGTGAGTGTGGTGGTGAGGAAGGATCTCTGCCAGTTCCTTGTCGGCGATGATGTCGGGGTCCGAGATAGGCAACGGAGTGGCGGGCATGGTGGTCTGATGGTGGTGGCCGGCCTCCCTGTGCAAGGGCTATCTTGGGCTGGGGTCAGGGCTTGGGCACTTCGGGCCTTGGTCTTGTGGGCCTGTTCTTGGCCTGGCTGTCCTTGGGCCTGGGGCTTCACCCTAGGTCCATTAGGTTTTATTTCATTTACTGTTGTTTTTTATTTATACTATTTAGTTTGTTTGCGCTATTTGCGAGCAATAAGTCCCTACAATTATTGTGTAGGGCTAGTCGGGCTTTGTGTCTGTGTGTGCACTCTAAGTGCCTTGTCTGCTCTAGGTAGGCGGCGAGTTCCTTGCTTCGTCAAATGGTCGCTACCGCCTAGTGGTAGGGTGAGACTAAGTGTCGCCGGGTCTCTCCGGCGGCAACATAGTAGGAAAGCTGTGCTAAAGCTGGCAATTATGCTACGTTGTAATCGTGTTACATATCGAGTTATCTTTCCGTTATGTCACCGCTATGTCAAAGCAAATCGAGTAGCCAGTAGAGCACTTTTTGCTAGTTGGTGCTTCTTTGAATACATGTATTATGTAGAGATTCCTGATATCATTTCGGGACATACTCTAGATGCTTATTGTAATCAGGGGTTTAGGCTTAATGTCCCCCCGTGTATTCGACAGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.96

Weight (kDa)

9.64

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 116, 143, 147, 150, 312, 613, 647, 691, 781
AclWI GGATC 6 cut(s) 6, 31, 44, 53, 54, 261
AcoI YGGCCR 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 216
AfiI CCNNNNNNNGG 5 cut(s) 21, 143, 353, 417, 653
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 1 cut(s) 842
AhdI GACNNNNNGTC 1 cut(s) 671
AjnI CCWGG 2 cut(s) 421, 437
AluBI AGCT 2 cut(s) 710, 721
AluI AGCT 2 cut(s) 710, 721
Alw21I GWGCWC 3 cut(s) 210, 584, 817
Alw26I GTCTC 2 cut(s) 658, 687
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 6 cut(s) 6, 31, 44, 53, 54, 261
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 6 cut(s) 336, 340, 393, 408, 419, 435
ApaLI GTGCAC 1 cut(s) 580
AspA2I CCTAGG 2 cut(s) 100, 451
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 5 cut(s) 289, 393, 408, 435, 455
AsuC2I CCSGG 2 cut(s) 16, 679
AsuHPI GGTGA 5 cut(s) 244, 256, 439, 673, 770
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 2 cut(s) 289, 455
AvrII CCTAGG 2 cut(s) 100, 451
BaeGI GKGCMC 2 cut(s) 388, 584
BamHI GGATCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 211
Bbv12I GWGCWC 3 cut(s) 210, 584, 817
BccI CCATC 1 cut(s) 322
BceAI ACGGC 2 cut(s) 129, 181
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BciT130I CCWGG 2 cut(s) 423, 439
BcnI CCSGG 2 cut(s) 16, 679
BcoDI GTCTC 2 cut(s) 658, 687
BfaI CTAG 8 cut(s) 101, 126, 452, 557, 605, 651, 825, 890
BisI GCNGC 4 cut(s) 117, 148, 614, 692
BlnI CCTAGG 2 cut(s) 100, 451
BlsI GCNGC 4 cut(s) 118, 149, 615, 693
Bme1390I CCNGG 4 cut(s) 16, 423, 439, 679
Bme18I GGWCC 2 cut(s) 289, 455
BmeRI GACNNNNNGTC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 5 cut(s) 289, 393, 408, 435, 455
BmiI GGNNCC 2 cut(s) 38, 290
BmrFI CCNGG 4 cut(s) 16, 423, 439, 679
BmsI GCATC 1 cut(s) 883
BpuMI CCSGG 2 cut(s) 16, 679
BsaI GGTCTC 1 cut(s) 687
BsaJI CCNNGG 6 cut(s) 100, 137, 396, 431, 438, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 143, 353, 417, 653
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 3 cut(s) 69, 262, 807
BseBI CCWGG 2 cut(s) 423, 439
BseDI CCNNGG 6 cut(s) 100, 137, 396, 431, 438, 451
BseGI GGATG 2 cut(s) 30, 228
BseLI CCNNNNNNNGG 5 cut(s) 21, 143, 353, 417, 653
BseNI ACTGG 3 cut(s) 69, 262, 807
BseSI GKGCMC 2 cut(s) 388, 584
BseYI CCCAGC 1 cut(s) 368
BshFI GGCC 6 cut(s) 338, 342, 395, 410, 421, 437
BsiHKAI GWGCWC 3 cut(s) 210, 584, 817
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 4 cut(s) 15, 339, 678, 688
BslFI GGGAC 4 cut(s) 176, 519, 894, 911
BslI CCNNNNNNNGG 5 cut(s) 21, 143, 353, 417, 653
BsmAI GTCTC 2 cut(s) 658, 687
BsmFI GGGAC 4 cut(s) 176, 519, 894, 911
BsnI GGCC 6 cut(s) 338, 342, 395, 410, 421, 437
Bso31I GGTCTC 1 cut(s) 687
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 4 cut(s) 210, 388, 584, 817
Bsp143I GATC 6 cut(s) 11, 36, 46, 58, 187, 253
BspACI CCGC 9 cut(s) 116, 143, 147, 150, 312, 613, 647, 691, 781
BspANI GGCC 6 cut(s) 338, 342, 395, 410, 421, 437
BspLI GGNNCC 2 cut(s) 38, 290
BspPI GGATC 6 cut(s) 6, 31, 44, 53, 54, 261
BspTNI GGTCTC 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 3 cut(s) 69, 262, 807
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 100, 137, 396, 431, 438, 451
BssMI GATC 6 cut(s) 11, 36, 46, 58, 187, 253
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 4 cut(s) 100, 396, 431, 451
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 423, 439
Bst4CI ACNGT 2 cut(s) 481, 945
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 5 cut(s) 145, 314, 340, 525, 723
BstDEI CTNAG 2 cut(s) 587, 668
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 30, 228
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 6 cut(s) 14, 39, 49, 61, 190, 256
BstMAI GTCTC 2 cut(s) 658, 687
BstMBI GATC 6 cut(s) 11, 36, 46, 58, 187, 253
BstMWI GCNNNNNNNGC 7 cut(s) 122, 392, 520, 562, 599, 812, 821
BstNI CCWGG 2 cut(s) 423, 439
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 4 cut(s) 14, 421, 437, 677
BstSLI GKGCMC 2 cut(s) 388, 584
BstX2I RGATCY 4 cut(s) 36, 46, 58, 253
BstYI RGATCY 4 cut(s) 36, 46, 58, 253
BsuRI GGCC 6 cut(s) 338, 342, 395, 410, 421, 437
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 30, 228
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 5 cut(s) 145, 314, 340, 525, 723
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 5 cut(s) 289, 393, 408, 435, 455
CviAII CATG 2 cut(s) 317, 847
DdeI CTNAG 2 cut(s) 587, 668
DpnI GATC 6 cut(s) 13, 38, 48, 60, 189, 255
DpnII GATC 6 cut(s) 11, 36, 46, 58, 187, 253
DraIII CACNNNGTG 1 cut(s) 216
DriI GACNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 336
Eam1105I GACNNNNNGTC 1 cut(s) 671
Eco130I CCWWGG 4 cut(s) 100, 396, 431, 451
Eco31I GGTCTC 1 cut(s) 687
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 2 cut(s) 289, 455
Eco88I CYCGRG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 421, 437
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 4 cut(s) 100, 396, 431, 451
ErhI CCWWGG 4 cut(s) 100, 396, 431, 451
FaeI CATG 2 cut(s) 320, 850
FaqI GGGAC 4 cut(s) 176, 519, 894, 911
FatI CATG 2 cut(s) 316, 846
FauI CCCGC 2 cut(s) 136, 305
Fnu4HI GCNGC 4 cut(s) 117, 148, 614, 692
FokI GGATG 2 cut(s) 37, 235
FseI GGCCGGCC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 117, 148, 614, 692
FspBI CTAG 8 cut(s) 101, 126, 452, 557, 605, 651, 825, 890
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 117, 148, 614, 692
GsaI CCCAGC 1 cut(s) 372
HaeIII GGCC 6 cut(s) 338, 342, 395, 410, 421, 437
HapII CCGG 4 cut(s) 15, 339, 678, 688
HhaI GCGC 1 cut(s) 516
Hin1II CATG 2 cut(s) 320, 850
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 3 cut(s) 6, 85, 862
HpaII CCGG 4 cut(s) 15, 339, 678, 688
HphI GGTGA 5 cut(s) 244, 256, 439, 673, 770
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 5 cut(s) 11, 46, 90, 293, 327
Hpy188III TCNNGA 6 cut(s) 22, 198, 211, 866, 879, 890
Hpy8I GTNNAC 1 cut(s) 582
Hpy99I CGWCG 2 cut(s) 115, 173
HpyAV CCTTC 2 cut(s) 195, 244
HpyCH4III ACNGT 2 cut(s) 481, 945
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 3 cut(s) 56, 352, 582
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 392, 520, 562, 599, 812, 821
HpyF3I CTNAG 2 cut(s) 587, 668
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 2 cut(s) 320, 850
HspAI GCGC 1 cut(s) 514
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 6 cut(s) 11, 36, 46, 58, 187, 253
LweI GCATC 1 cut(s) 883
MaeI CTAG 8 cut(s) 101, 126, 452, 557, 605, 651, 825, 890
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 2 cut(s) 748, 776
MalI GATC 6 cut(s) 13, 38, 48, 60, 189, 255
MboI GATC 6 cut(s) 11, 36, 46, 58, 187, 253
MflI RGATCY 4 cut(s) 36, 46, 58, 253
MhlI GDGCHC 4 cut(s) 210, 388, 584, 817
MluCI AATT 2 cut(s) 541, 726
MnlI CCTC 5 cut(s) 147, 167, 207, 240, 353
MroNI GCCGGC 1 cut(s) 338
MseI TTAA 2 cut(s) 921, 952
MslI CAYNNNNRTG 1 cut(s) 783
MspI CCGG 4 cut(s) 15, 339, 678, 688
MspR9I CCNGG 4 cut(s) 16, 423, 439, 679
MvaI CCWGG 2 cut(s) 423, 439
MwoI GCNNNNNNNGC 7 cut(s) 122, 392, 520, 562, 599, 812, 821
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 2 cut(s) 16, 679
NdeII GATC 6 cut(s) 11, 36, 46, 58, 187, 253
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 2 cut(s) 320, 850
NlaIV GGNNCC 2 cut(s) 38, 290
NmuCI GTSAC 1 cut(s) 776
NspI RCATGY 1 cut(s) 850
PciI ACATGT 1 cut(s) 846
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 742
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 6, 85, 862
PkrI GCNGC 4 cut(s) 118, 149, 615, 693
PscI ACATGT 1 cut(s) 846
Psp6I CCWGG 2 cut(s) 421, 437
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 421, 437
PspN4I GGNNCC 2 cut(s) 38, 290
PspPI GGNCC 5 cut(s) 289, 393, 408, 435, 455
PsuI RGATCY 4 cut(s) 36, 46, 58, 253
RigI GGCCGGCC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 783
SaqAI TTAA 2 cut(s) 921, 952
SatI GCNGC 4 cut(s) 117, 148, 614, 692
Sau3AI GATC 6 cut(s) 11, 36, 46, 58, 187, 253
Sau96I GGNCC 5 cut(s) 289, 393, 408, 435, 455
ScrFI CCNGG 4 cut(s) 16, 423, 439, 679
SduI GDGCHC 4 cut(s) 210, 388, 584, 817
SetI ASST 9 cut(s) 96, 106, 218, 457, 466, 610, 712, 723, 739
SfaNI GCATC 1 cut(s) 883
SinI GGWCC 2 cut(s) 289, 455
SmiMI CAYNNNNRTG 1 cut(s) 783
Sse9I AATT 2 cut(s) 541, 726
SsiI CCGC 9 cut(s) 116, 143, 147, 150, 312, 613, 647, 691, 781
SspMI CTAG 8 cut(s) 101, 126, 452, 557, 605, 651, 825, 890
StyD4I CCNGG 4 cut(s) 14, 421, 437, 677
StyI CCWWGG 4 cut(s) 100, 396, 431, 451
TaaI ACNGT 2 cut(s) 481, 945
TaiI ACGT 1 cut(s) 739
TaqI TCGA 5 cut(s) 110, 186, 757, 799, 940
TasI AATT 2 cut(s) 541, 726
TauI GCSGC 4 cut(s) 119, 150, 616, 694
TfiI GAWTC 3 cut(s) 6, 85, 862
Tru1I TTAA 2 cut(s) 921, 952
Tru9I TTAA 2 cut(s) 921, 952
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 776
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 2 cut(s) 462, 938
TspGWI ACGGA 3 cut(s) 186, 319, 759
TspRI CASTG 1 cut(s) 69
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 289, 455
XagI CCTNNNNNAGG 1 cut(s) 351
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 850
XmaJI CCTAGG 2 cut(s) 100, 451
XspI CTAG 8 cut(s) 101, 126, 452, 557, 605, 651, 825, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.