RchiOBHm_Chr1g0346381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
38630127 .. 38633444
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57265

Sequence Viewer

Length: 960 bp
ATGGCTGTGATGCGAATCCGATCCGGGTTCTGGATGTGTGATTGGATCCGTTCGGATCTTGTTGCAGATCCACTGGTGGTTGGTTGCTGTGTGATTCCGAACCTTGTCCTAGGTGGCTCGAAGGCGGCGTTGGCTAGGATTTTTCCTCGGGCGGGCGGCGGTGCGATTGGGGACGGCGACGGAGGGAGTGGTGTCGATCTCCTTTCTGGAAGGGTGCTCACGAGGTGTGGGATGTTGGTGGTGAGTGTGGTGGTGAGGAAGGATCTCTGCCAGTTCCTTGTCGGCGATGATGTCGGGGTCCGAGATAGGCAACGGAGTGGCGGGCATGGTGGTCTGATGGTGGTGGCCGGCCTCCCTGTGCAAGGGCTATCTTGGGCTGGGGTCAGGGCTTGGGCACTTCGGGCCTGTTCTTGGCCTGGCTGTCCTTGGGCCTGGGGCTTCACCCTAGGTCCATTAGGTTTTATTTCATTTACTATTGTTTTTTATTTATACCATTTAGTTTGTTTGCGCTATTTGCGAGCAATAAGTCCCTACAATTATTGTGTAGGGCTAGTCGGGCTTTGTGTCTGTGTGTGCACTCTAAGTGCCTTGTCTGCTCTAGGTAGGCGGCGAGTTCCTTGCTTCGTCAAATGGTCGCTACCGCCTAGTGGCAGGGTGAGACTAAGTGTCGCCGGGTCTCTCCGGCGGCAACATAGTAGGAAAGCTGTGCTAAAGCTGGCAATTATGCTACGTTGTAATCGTGTTACATATCGAGTTATCTTTCCGTTATGTCACCGCTATGTCAAAGCAAATCGAGTAGCCAGTAGAGCACTCTTTGCTAGTTGGTGCTTCTTTGAATACATGTATTATGTAGAGATTCCTGATATCATTTCGGGACATACTCTAGATGCTTATTGTAATCAGGGGTTTAGGCTTAATGTCCCCCCCGTGTATTCGACAGTTTCATTAATTAAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

34.99

Weight (kDa)

9.79

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 125, 152, 156, 159, 321, 607, 641, 685, 775
AclWI GGATC 6 cut(s) 15, 40, 53, 62, 63, 270
AcoI YGGCCR 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 225
AfiI CCNNNNNNNGG 5 cut(s) 30, 152, 362, 411, 647
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 1 cut(s) 836
AhdI GACNNNNNGTC 1 cut(s) 665
AjnI CCWGG 2 cut(s) 415, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 704, 715
AluI AGCT 2 cut(s) 704, 715
Alw21I GWGCWC 3 cut(s) 219, 578, 811
Alw26I GTCTC 2 cut(s) 652, 681
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 6 cut(s) 15, 40, 53, 62, 63, 270
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 5 cut(s) 345, 349, 402, 413, 429
ApaLI GTGCAC 1 cut(s) 574
AseI ATTAAT 1 cut(s) 947
AspA2I CCTAGG 2 cut(s) 109, 445
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 4 cut(s) 298, 402, 429, 449
AsuC2I CCSGG 2 cut(s) 25, 673
AsuHPI GGTGA 5 cut(s) 253, 265, 433, 667, 764
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 298, 449
AvrII CCTAGG 2 cut(s) 109, 445
BaeGI GKGCMC 2 cut(s) 397, 578
BamHI GGATCC 1 cut(s) 45
BauI CACGAG 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 219, 578, 811
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BciT130I CCWGG 2 cut(s) 417, 433
BcnI CCSGG 2 cut(s) 25, 673
BcoDI GTCTC 2 cut(s) 652, 681
BfaI CTAG 8 cut(s) 110, 135, 446, 551, 599, 645, 819, 884
BisI GCNGC 4 cut(s) 126, 157, 608, 686
BlnI CCTAGG 2 cut(s) 109, 445
BlsI GCNGC 4 cut(s) 127, 158, 609, 687
Bme1390I CCNGG 4 cut(s) 25, 417, 433, 673
Bme18I GGWCC 2 cut(s) 298, 449
BmeRI GACNNNNNGTC 1 cut(s) 665
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 298, 402, 429, 449
BmiI GGNNCC 2 cut(s) 47, 299
BmrFI CCNGG 4 cut(s) 25, 417, 433, 673
BmsI GCATC 1 cut(s) 877
BpuMI CCSGG 2 cut(s) 25, 673
BsaBI GATNNNNATC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 5 cut(s) 109, 146, 425, 432, 445
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 152, 362, 411, 647
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 78, 271, 801
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 2 cut(s) 417, 433
BseDI CCNNGG 5 cut(s) 109, 146, 425, 432, 445
BseGI GGATG 2 cut(s) 39, 237
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 5 cut(s) 30, 152, 362, 411, 647
BseNI ACTGG 3 cut(s) 78, 271, 801
BseSI GKGCMC 2 cut(s) 397, 578
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 5 cut(s) 347, 351, 404, 415, 431
BsiHKAI GWGCWC 3 cut(s) 219, 578, 811
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 24, 348, 672, 682
BslFI GGGAC 4 cut(s) 185, 513, 888, 905
BslI CCNNNNNNNGG 5 cut(s) 30, 152, 362, 411, 647
BsmAI GTCTC 2 cut(s) 652, 681
BsmFI GGGAC 4 cut(s) 185, 513, 888, 905
BsnI GGCC 5 cut(s) 347, 351, 404, 415, 431
Bso31I GGTCTC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 4 cut(s) 219, 397, 578, 811
Bsp143I GATC 6 cut(s) 20, 45, 55, 67, 196, 262
BspACI CCGC 9 cut(s) 125, 152, 156, 159, 321, 607, 641, 685, 775
BspANI GGCC 5 cut(s) 347, 351, 404, 415, 431
BspLI GGNNCC 2 cut(s) 47, 299
BspPI GGATC 6 cut(s) 15, 40, 53, 62, 63, 270
BspTNI GGTCTC 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 3 cut(s) 78, 271, 801
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 5 cut(s) 109, 146, 425, 432, 445
BssMI GATC 6 cut(s) 20, 45, 55, 67, 196, 262
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 3 cut(s) 109, 425, 445
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 417, 433
Bst4CI ACNGT 1 cut(s) 940
BstAPI GCANNNNNTGC 1 cut(s) 815
BstC8I GCNNGC 5 cut(s) 154, 323, 349, 519, 717
BstDEI CTNAG 2 cut(s) 581, 662
BstENI CCTNNNNNAGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 39, 237
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 23, 48, 58, 70, 199, 265
BstMAI GTCTC 2 cut(s) 652, 681
BstMBI GATC 6 cut(s) 20, 45, 55, 67, 196, 262
BstMWI GCNNNNNNNGC 7 cut(s) 131, 401, 514, 556, 593, 806, 815
BstNI CCWGG 2 cut(s) 417, 433
BstNSI RCATGY 1 cut(s) 844
BstSCI CCNGG 4 cut(s) 23, 415, 431, 671
BstSLI GKGCMC 2 cut(s) 397, 578
BstX2I RGATCY 4 cut(s) 45, 55, 67, 262
BstYI RGATCY 4 cut(s) 45, 55, 67, 262
BsuRI GGCC 5 cut(s) 347, 351, 404, 415, 431
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 39, 237
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 5 cut(s) 154, 323, 349, 519, 717
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 298, 402, 429, 449
CviAII CATG 2 cut(s) 326, 841
DdeI CTNAG 2 cut(s) 581, 662
DpnI GATC 6 cut(s) 22, 47, 57, 69, 198, 264
DpnII GATC 6 cut(s) 20, 45, 55, 67, 196, 262
DraIII CACNNNGTG 1 cut(s) 225
DriI GACNNNNNGTC 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 345
Eam1105I GACNNNNNGTC 1 cut(s) 665
Eco130I CCWWGG 3 cut(s) 109, 425, 445
Eco31I GGTCTC 1 cut(s) 681
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 2 cut(s) 298, 449
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 415, 431
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 109, 425, 445
ErhI CCWWGG 3 cut(s) 109, 425, 445
FaeI CATG 2 cut(s) 329, 844
FaqI GGGAC 4 cut(s) 185, 513, 888, 905
FatI CATG 2 cut(s) 325, 840
FauI CCCGC 2 cut(s) 145, 314
Fnu4HI GCNGC 4 cut(s) 126, 157, 608, 686
FokI GGATG 2 cut(s) 46, 244
FseI GGCCGGCC 1 cut(s) 351
Fsp4HI GCNGC 4 cut(s) 126, 157, 608, 686
FspBI CTAG 8 cut(s) 110, 135, 446, 551, 599, 645, 819, 884
GlaI GCGC 1 cut(s) 509
GluI GCNGC 4 cut(s) 126, 157, 608, 686
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 5 cut(s) 347, 351, 404, 415, 431
HapII CCGG 4 cut(s) 24, 348, 672, 682
HhaI GCGC 1 cut(s) 510
Hin1II CATG 2 cut(s) 329, 844
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 3 cut(s) 15, 94, 856
HpaII CCGG 4 cut(s) 24, 348, 672, 682
HphI GGTGA 5 cut(s) 253, 265, 433, 667, 764
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 5 cut(s) 20, 55, 99, 302, 336
Hpy188III TCNNGA 6 cut(s) 31, 207, 220, 860, 873, 884
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 115, 204, 253
HpyCH4III ACNGT 1 cut(s) 940
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 3 cut(s) 65, 361, 576
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 401, 514, 556, 593, 806, 815
HpyF3I CTNAG 2 cut(s) 581, 662
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 2 cut(s) 329, 844
HspAI GCGC 1 cut(s) 508
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Kzo9I GATC 6 cut(s) 20, 45, 55, 67, 196, 262
LweI GCATC 1 cut(s) 877
MaeI CTAG 8 cut(s) 110, 135, 446, 551, 599, 645, 819, 884
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 742, 770
MalI GATC 6 cut(s) 22, 47, 57, 69, 198, 264
MboI GATC 6 cut(s) 20, 45, 55, 67, 196, 262
MflI RGATCY 4 cut(s) 45, 55, 67, 262
MhlI GDGCHC 4 cut(s) 219, 397, 578, 811
MluCI AATT 3 cut(s) 535, 720, 948
MnlI CCTC 5 cut(s) 156, 176, 216, 249, 362
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 3 cut(s) 915, 947, 951
MslI CAYNNNNRTG 1 cut(s) 777
MspI CCGG 4 cut(s) 24, 348, 672, 682
MspR9I CCNGG 4 cut(s) 25, 417, 433, 673
MvaI CCWGG 2 cut(s) 417, 433
MwoI GCNNNNNNNGC 7 cut(s) 131, 401, 514, 556, 593, 806, 815
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 2 cut(s) 25, 673
NdeII GATC 6 cut(s) 20, 45, 55, 67, 196, 262
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 2 cut(s) 329, 844
NlaIV GGNNCC 2 cut(s) 47, 299
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 1 cut(s) 844
PacI TTAATTAA 1 cut(s) 951
PciI ACATGT 1 cut(s) 840
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 736
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 15, 94, 856
PkrI GCNGC 4 cut(s) 127, 158, 609, 687
PscI ACATGT 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 947
Psp6I CCWGG 2 cut(s) 415, 431
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 2 cut(s) 415, 431
PspN4I GGNNCC 2 cut(s) 47, 299
PspPI GGNCC 4 cut(s) 298, 402, 429, 449
PsuI RGATCY 4 cut(s) 45, 55, 67, 262
RigI GGCCGGCC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 3 cut(s) 915, 947, 951
SatI GCNGC 4 cut(s) 126, 157, 608, 686
Sau3AI GATC 6 cut(s) 20, 45, 55, 67, 196, 262
Sau96I GGNCC 4 cut(s) 298, 402, 429, 449
ScrFI CCNGG 4 cut(s) 25, 417, 433, 673
SduI GDGCHC 4 cut(s) 219, 397, 578, 811
SetI ASST 9 cut(s) 105, 115, 227, 451, 460, 604, 706, 717, 733
SfaNI GCATC 1 cut(s) 877
SinI GGWCC 2 cut(s) 298, 449
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse9I AATT 3 cut(s) 535, 720, 948
SsiI CCGC 9 cut(s) 125, 152, 156, 159, 321, 607, 641, 685, 775
SspMI CTAG 8 cut(s) 110, 135, 446, 551, 599, 645, 819, 884
StyD4I CCNGG 4 cut(s) 23, 415, 431, 671
StyI CCWWGG 3 cut(s) 109, 425, 445
TaaI ACNGT 1 cut(s) 940
TaiI ACGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 119, 195, 751, 793, 935
TasI AATT 3 cut(s) 535, 720, 948
TauI GCSGC 4 cut(s) 128, 159, 610, 688
TfiI GAWTC 3 cut(s) 15, 94, 856
Tru1I TTAA 3 cut(s) 915, 947, 951
Tru9I TTAA 3 cut(s) 915, 947, 951
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 2 cut(s) 456, 933
TspGWI ACGGA 4 cut(s) 38, 195, 328, 753
TspRI CASTG 1 cut(s) 78
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 2 cut(s) 298, 449
VspI ATTAAT 1 cut(s) 947
XagI CCTNNNNNAGG 1 cut(s) 360
XbaI TCTAGA 1 cut(s) 883
XceI RCATGY 1 cut(s) 844
XmaJI CCTAGG 2 cut(s) 109, 445
XspI CTAG 8 cut(s) 110, 135, 446, 551, 599, 645, 819, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.