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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1056 |
| AarI | CACCTGC | 2 cut(s) | 163, 252 |
| Acc36I | ACCTGC | 2 cut(s) | 163, 252 |
| AccB1I | GGYRCC | 2 cut(s) | 409, 506 |
| AccII | CGCG | 1 cut(s) | 475 |
| AclWI | GGATC | 4 cut(s) | 40, 78, 263, 404 |
| AcsI | RAATTY | 1 cut(s) | 814 |
| AcyI | GRCGYC | 2 cut(s) | 130, 542 |
| AdeI | CACNNNGTG | 1 cut(s) | 738 |
| AfaI | GTAC | 1 cut(s) | 1004 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 586, 682, 689 |
| AgsI | TTSAA | 1 cut(s) | 424 |
| AjiI | CACGTC | 1 cut(s) | 485 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 178, 210, 900, 932 |
| AluBI | AGCT | 5 cut(s) | 60, 83, 113, 234, 863 |
| AluI | AGCT | 5 cut(s) | 60, 83, 113, 234, 863 |
| Alw26I | GTCTC | 2 cut(s) | 93, 218 |
| AlwI | GGATC | 4 cut(s) | 40, 78, 263, 404 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 169 |
| AoxI | GGCC | 6 cut(s) | 182, 430, 553, 577, 697, 712 |
| ApeKI | GCWGC | 8 cut(s) | 57, 169, 470, 478, 603, 793, 899, 933 |
| ApoI | RAATTY | 1 cut(s) | 814 |
| AspLEI | GCGC | 3 cut(s) | 475, 515, 976 |
| AspS9I | GGNCC | 3 cut(s) | 182, 553, 577 |
| AsuC2I | CCSGG | 2 cut(s) | 581, 896 |
| AsuHPI | GGTGA | 3 cut(s) | 460, 817, 920 |
| AsuNHI | GCTAGC | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 1 cut(s) | 412 |
| BanI | GGYRCC | 2 cut(s) | 409, 506 |
| BbvI | GCAGC | 8 cut(s) | 69, 156, 457, 490, 590, 780, 886, 920 |
| BccI | CCATC | 4 cut(s) | 40, 184, 561, 568 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 756, 790 |
| BcnI | CCSGG | 2 cut(s) | 581, 896 |
| BcoDI | GTCTC | 2 cut(s) | 93, 218 |
| BfaI | CTAG | 4 cut(s) | 9, 384, 755, 984 |
| BfmI | CTRYAG | 5 cut(s) | 170, 259, 889, 900, 942 |
| BfoI | RGCGCY | 1 cut(s) | 516 |
| BfuAI | ACCTGC | 2 cut(s) | 163, 252 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 150 |
| BglII | AGATCT | 2 cut(s) | 224, 374 |
| Bme1390I | CCNGG | 2 cut(s) | 581, 896 |
| BmgBI | CACGTC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 3 cut(s) | 182, 553, 577 |
| BmiI | GGNNCC | 2 cut(s) | 411, 508 |
| BmrFI | CCNGG | 2 cut(s) | 581, 896 |
| BmrI | ACTGGG | 2 cut(s) | 76, 359 |
| BmsI | GCATC | 4 cut(s) | 156, 441, 516, 856 |
| BmtI | GCTAGC | 1 cut(s) | 12 |
| BmuI | ACTGGG | 2 cut(s) | 76, 359 |
| BpmI | CTGGAG | 1 cut(s) | 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 40 |
| BpuMI | CCSGG | 2 cut(s) | 581, 896 |
| Bsa29I | ATCGAT | 1 cut(s) | 524 |
| BsaBI | GATNNNNATC | 1 cut(s) | 379 |
| BsaHI | GRCGYC | 2 cut(s) | 130, 542 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 2 cut(s) | 185, 330 |
| BsaWI | WCCGGW | 3 cut(s) | 682, 827, 840 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 554, 584 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 586, 682, 689 |
| Bse118I | RCCGGY | 2 cut(s) | 144, 509 |
| Bse1I | ACTGG | 5 cut(s) | 71, 354, 708, 723, 966 |
| Bse8I | GATNNNNATC | 1 cut(s) | 379 |
| BseCI | ATCGAT | 1 cut(s) | 524 |
| BseDI | CCNNGG | 2 cut(s) | 185, 330 |
| BseGI | GGATG | 4 cut(s) | 51, 195, 579, 836 |
| BseJI | GATNNNNATC | 1 cut(s) | 379 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 586, 682, 689 |
| BseMII | CTCAG | 3 cut(s) | 54, 362, 692 |
| BseNI | ACTGG | 5 cut(s) | 71, 354, 708, 723, 966 |
| BseSI | GKGCMC | 1 cut(s) | 412 |
| BseXI | GCAGC | 8 cut(s) | 69, 156, 457, 490, 590, 780, 886, 920 |
| BseYI | CCCAGC | 2 cut(s) | 234, 356 |
| BsgI | GTGCAG | 2 cut(s) | 419, 481 |
| Bsh1236I | CGCG | 1 cut(s) | 475 |
| Bsh1285I | CGRYCG | 2 cut(s) | 319, 368 |
| BshFI | GGCC | 6 cut(s) | 184, 432, 555, 579, 699, 714 |
| BshNI | GGYRCC | 2 cut(s) | 409, 506 |
| BshVI | ATCGAT | 1 cut(s) | 524 |
| BsiEI | CGRYCG | 2 cut(s) | 319, 368 |
| BsiSI | CCGG | 8 cut(s) | 127, 145, 510, 580, 683, 828, 841, 895 |
| BslFI | GGGAC | 3 cut(s) | 320, 375, 1064 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 586, 682, 689 |
| BsmAI | GTCTC | 2 cut(s) | 93, 218 |
| BsmBI | CGTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 3 cut(s) | 320, 375, 1064 |
| BsnI | GGCC | 6 cut(s) | 184, 432, 555, 579, 699, 714 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 412 |
| BspANI | GGCC | 6 cut(s) | 184, 432, 555, 579, 699, 714 |
| BspCNI | CTCAG | 3 cut(s) | 53, 363, 693 |
| BspDI | ATCGAT | 1 cut(s) | 524 |
| BspFNI | CGCG | 1 cut(s) | 475 |
| BspLI | GGNNCC | 2 cut(s) | 411, 508 |
| BspMAI | CTGCAG | 4 cut(s) | 174, 263, 904, 946 |
| BspMI | ACCTGC | 2 cut(s) | 163, 252 |
| BspOI | GCTAGC | 1 cut(s) | 12 |
| BspPI | GGATC | 4 cut(s) | 40, 78, 263, 404 |
| BspT107I | GGYRCC | 2 cut(s) | 409, 506 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 144, 509 |
| BsrI | ACTGG | 5 cut(s) | 71, 354, 708, 723, 966 |
| BssAI | RCCGGY | 2 cut(s) | 144, 509 |
| BssECI | CCNNGG | 2 cut(s) | 185, 330 |
| BssNI | GRCGYC | 2 cut(s) | 130, 542 |
| BssT1I | CCWWGG | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 6 cut(s) | 317, 331, 366, 440, 677, 1100 |
| Bst6I | CTCTTC | 1 cut(s) | 96 |
| BstACI | GRCGYC | 2 cut(s) | 130, 542 |
| BstC8I | GCNNGC | 7 cut(s) | 10, 115, 146, 434, 511, 517, 531 |
| BstDEI | CTNAG | 4 cut(s) | 40, 371, 701, 800 |
| BstDSI | CCRYGG | 1 cut(s) | 330 |
| BstF5I | GGATG | 4 cut(s) | 51, 195, 579, 836 |
| BstFNI | CGCG | 1 cut(s) | 475 |
| BstH2I | RGCGCY | 1 cut(s) | 516 |
| BstHHI | GCGC | 3 cut(s) | 475, 515, 976 |
| BstMAI | GTCTC | 2 cut(s) | 93, 218 |
| BstMCI | CGRYCG | 2 cut(s) | 319, 368 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 150, 159, 539, 749, 950, 971, 980 |
| BstSCI | CCNGG | 2 cut(s) | 579, 894 |
| BstSFI | CTRYAG | 5 cut(s) | 170, 259, 889, 900, 942 |
| BstSLI | GKGCMC | 1 cut(s) | 412 |
| BstUI | CGCG | 1 cut(s) | 475 |
| BstV1I | GCAGC | 8 cut(s) | 69, 156, 457, 490, 590, 780, 886, 920 |
| BstX2I | RGATCY | 4 cut(s) | 32, 224, 255, 374 |
| BstYI | RGATCY | 4 cut(s) | 32, 224, 255, 374 |
| Bsu15I | ATCGAT | 1 cut(s) | 524 |
| BsuRI | GGCC | 6 cut(s) | 184, 432, 555, 579, 699, 714 |
| BsuTUI | ATCGAT | 1 cut(s) | 524 |
| BtgI | CCRYGG | 1 cut(s) | 330 |
| BtrI | CACGTC | 1 cut(s) | 485 |
| BtsCI | GGATG | 4 cut(s) | 51, 195, 579, 836 |
| BtsI | GCAGTG | 1 cut(s) | 700 |
| BtsIMutI | CAGTG | 3 cut(s) | 445, 700, 715 |
| BveI | ACCTGC | 2 cut(s) | 163, 252 |
| Cac8I | GCNNGC | 7 cut(s) | 10, 115, 146, 434, 511, 517, 531 |
| CaiI | CAGNNNCTG | 1 cut(s) | 169 |
| CfoI | GCGC | 3 cut(s) | 475, 515, 976 |
| Cfr10I | RCCGGY | 2 cut(s) | 144, 509 |
| Cfr13I | GGNCC | 3 cut(s) | 182, 553, 577 |
| ClaI | ATCGAT | 1 cut(s) | 524 |
| CseI | GACGC | 2 cut(s) | 119, 531 |
| Csp6I | GTAC | 1 cut(s) | 1003 |
| CviAII | CATG | 1 cut(s) | 620 |
| CviQI | GTAC | 1 cut(s) | 1003 |
| DdeI | CTNAG | 4 cut(s) | 40, 371, 701, 800 |
| DraIII | CACNNNGTG | 1 cut(s) | 738 |
| Eam1104I | CTCTTC | 1 cut(s) | 96 |
| EarI | CTCTTC | 1 cut(s) | 96 |
| EciI | GGCGGA | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 1 cut(s) | 185 |
| Eco147I | AGGCCT | 1 cut(s) | 432 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| EcoT14I | CCWWGG | 1 cut(s) | 185 |
| ErhI | CCWWGG | 1 cut(s) | 185 |
| Esp3I | CGTCTC | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 623 |
| FaiI | YATR | 9 cut(s) | 25, 559, 621, 852, 870, 872, 881, 1056, 1077 |
| FaqI | GGGAC | 3 cut(s) | 320, 375, 1064 |
| FatI | CATG | 1 cut(s) | 619 |
| FauI | CCCGC | 2 cut(s) | 21, 141 |
| FauNDI | CATATG | 1 cut(s) | 870 |
| FokI | GGATG | 4 cut(s) | 58, 202, 586, 843 |
| FspBI | CTAG | 4 cut(s) | 9, 384, 755, 984 |
| GlaI | GCGC | 3 cut(s) | 474, 514, 975 |
| GsaI | CCCAGC | 2 cut(s) | 238, 360 |
| GsuI | CTGGAG | 1 cut(s) | 305 |
| HaeII | RGCGCY | 1 cut(s) | 516 |
| HaeIII | GGCC | 6 cut(s) | 184, 432, 555, 579, 699, 714 |
| HapII | CCGG | 8 cut(s) | 127, 145, 510, 580, 683, 828, 841, 895 |
| HgaI | GACGC | 2 cut(s) | 119, 531 |
| HhaI | GCGC | 3 cut(s) | 475, 515, 976 |
| Hin1I | GRCGYC | 2 cut(s) | 130, 542 |
| Hin1II | CATG | 1 cut(s) | 623 |
| Hin6I | GCGC | 3 cut(s) | 473, 513, 974 |
| HinP1I | GCGC | 3 cut(s) | 473, 513, 974 |
| HinfI | GANTC | 1 cut(s) | 960 |
| HpaII | CCGG | 8 cut(s) | 127, 145, 510, 580, 683, 828, 841, 895 |
| HphI | GGTGA | 3 cut(s) | 460, 817, 920 |
| Hpy188I | TCNGA | 2 cut(s) | 218, 231 |
| Hpy188III | TCNNGA | 5 cut(s) | 284, 378, 394, 1025, 1038 |
| Hpy99I | CGWCG | 3 cut(s) | 99, 135, 486 |
| HpyAV | CCTTC | 1 cut(s) | 754 |
| HpyCH4III | ACNGT | 6 cut(s) | 317, 331, 366, 440, 677, 1100 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 150, 159, 539, 749, 950, 971, 980 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 371, 701, 800 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92I | GRCGYC | 2 cut(s) | 130, 542 |
| Hsp92II | CATG | 1 cut(s) | 623 |
| HspAI | GCGC | 3 cut(s) | 473, 513, 974 |
| KroI | GCCGGC | 2 cut(s) | 144, 509 |
| KroNI | GCCGGC | 2 cut(s) | 146, 511 |
| LmnI | GCTCC | 4 cut(s) | 80, 110, 231, 286 |
| Lsp1109I | GCAGC | 8 cut(s) | 69, 156, 457, 490, 590, 780, 886, 920 |
| LweI | GCATC | 4 cut(s) | 156, 441, 516, 856 |
| MaeI | CTAG | 4 cut(s) | 9, 384, 755, 984 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 4 cut(s) | 803, 823, 926, 937 |
| MboII | GAAGA | 3 cut(s) | 83, 436, 629 |
| MflI | RGATCY | 4 cut(s) | 32, 224, 255, 374 |
| MhlI | GDGCHC | 1 cut(s) | 412 |
| MluCI | AATT | 2 cut(s) | 814, 1108 |
| MlyI | GAGTC | 1 cut(s) | 969 |
| MmeI | TCCRAC | 4 cut(s) | 227, 273, 667, 696 |
| MnlI | CCTC | 9 cut(s) | 10, 43, 243, 328, 679, 683, 803, 807, 1034 |
| MroNI | GCCGGC | 2 cut(s) | 144, 509 |
| MseI | TTAA | 4 cut(s) | 818, 948, 1107, 1111 |
| MslI | CAYNNNNRTG | 1 cut(s) | 852 |
| MspA1I | CMGCKG | 1 cut(s) | 933 |
| MspI | CCGG | 8 cut(s) | 127, 145, 510, 580, 683, 828, 841, 895 |
| MspR9I | CCNGG | 2 cut(s) | 581, 896 |
| MvnI | CGCG | 1 cut(s) | 475 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 150, 159, 539, 749, 950, 971, 980 |
| NaeI | GCCGGC | 2 cut(s) | 146, 511 |
| NciI | CCSGG | 2 cut(s) | 581, 896 |
| NdeI | CATATG | 1 cut(s) | 870 |
| NgoMIV | GCCGGC | 2 cut(s) | 144, 509 |
| NheI | GCTAGC | 1 cut(s) | 8 |
| NlaIII | CATG | 1 cut(s) | 623 |
| NlaIV | GGNNCC | 2 cut(s) | 411, 508 |
| NmuCI | GTSAC | 2 cut(s) | 823, 926 |
| PacI | TTAATTAA | 1 cut(s) | 1111 |
| PaqCI | CACCTGC | 2 cut(s) | 163, 252 |
| PceI | AGGCCT | 1 cut(s) | 432 |
| PdiI | GCCGGC | 2 cut(s) | 146, 511 |
| PleI | GAGTC | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 968 |
| PsiI | TTATAA | 1 cut(s) | 1056 |
| PspFI | CCCAGC | 2 cut(s) | 234, 356 |
| PspN4I | GGNNCC | 2 cut(s) | 411, 508 |
| PspPI | GGNCC | 3 cut(s) | 182, 553, 577 |
| PstI | CTGCAG | 4 cut(s) | 174, 263, 904, 946 |
| PstNI | CAGNNNCTG | 1 cut(s) | 169 |
| PsuI | RGATCY | 4 cut(s) | 32, 224, 255, 374 |
| RsaI | GTAC | 1 cut(s) | 1004 |
| RsaNI | GTAC | 1 cut(s) | 1003 |
| RseI | CAYNNNNRTG | 1 cut(s) | 852 |
| SaqAI | TTAA | 4 cut(s) | 818, 948, 1107, 1111 |
| Sau96I | GGNCC | 3 cut(s) | 182, 553, 577 |
| SchI | GAGTC | 1 cut(s) | 969 |
| ScrFI | CCNGG | 2 cut(s) | 581, 896 |
| SduI | GDGCHC | 1 cut(s) | 412 |
| SfaNI | GCATC | 4 cut(s) | 156, 441, 516, 856 |
| SfcI | CTRYAG | 5 cut(s) | 170, 259, 889, 900, 942 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 852 |
| Sse9I | AATT | 2 cut(s) | 814, 1108 |
| SseBI | AGGCCT | 1 cut(s) | 432 |
| SspMI | CTAG | 4 cut(s) | 9, 384, 755, 984 |
| StuI | AGGCCT | 1 cut(s) | 432 |
| StyD4I | CCNGG | 2 cut(s) | 579, 894 |
| StyI | CCWWGG | 1 cut(s) | 185 |
| TaaI | ACNGT | 6 cut(s) | 317, 331, 366, 440, 677, 1100 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TaqI | TCGA | 3 cut(s) | 379, 524, 1095 |
| TasI | AATT | 2 cut(s) | 814, 1108 |
| TatI | WGTACW | 1 cut(s) | 1002 |
| TauI | GCSGC | 6 cut(s) | 15, 325, 346, 457, 478, 766 |
| Tru1I | TTAA | 4 cut(s) | 818, 948, 1107, 1111 |
| Tru9I | TTAA | 4 cut(s) | 818, 948, 1107, 1111 |
| TscAI | CASTG | 3 cut(s) | 445, 700, 715 |
| TseFI | GTSAC | 2 cut(s) | 823, 926 |
| TseI | GCWGC | 8 cut(s) | 57, 169, 470, 478, 603, 793, 899, 933 |
| Tsp45I | GTSAC | 2 cut(s) | 823, 926 |
| TspDTI | ATGAA | 1 cut(s) | 608 |
| TspGWI | ACGGA | 2 cut(s) | 134, 909 |
| TspRI | CASTG | 3 cut(s) | 445, 700, 715 |
| XapI | RAATTY | 1 cut(s) | 814 |
| XspI | CTAG | 4 cut(s) | 9, 384, 755, 984 |