RchiOBHm_Chr1g0320181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Forward (+)
7820878 .. 7821654
777 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55035

Sequence Viewer

Length: 726 bp
ATGGAGGCTCAGGAGGCAGTTTCGGTCTGGGTTCGGGTGGACCTGGGTCCGATCTGGGTTTGGGGTTGGACGGGGGTCTGCACGTGTGACTCCGTGTTGTTTCTGGGGCAGTTGGAGTGGCTCTGGGACACGGATGGCCGGCGGCGAACCGTGGATGCTCTGCGGCAACTGGGGGCTGGGGGAGGGTCGTTGCGATCCCGATCTGGTAGGTTATGGATCGGGTTTTGGGCACCGATTGGGTTGAAGAAGGGCCTGCACAGTGTCGTGGTGATACGGCGGTGCAGAGTTGCTGAGCGGCGGCGTCAGCCTACTCGGGGGCGGTCTGGTGCCGGCGGTTGCAAATCGTTGCTTGCTTGGTGGGCTTCTGCTTTGGGCCTCTGGGAGAGAGGGTGGATGGGCCGGGTTTCGGCTGTTTGGCTTTGCTGCTTCGTTTGCTGTTGGTGGGTTGCTTTGCGCATGCTGCGCGAAATAAGTCCCTGCATTCGTTGTGTAGGGATGGTTGGGCTTTTTGCCTGTGGGTGCACTCGATGTGCCTTGTCTGCTCTAGGGTGGCGGCGAGTTCCTTGCTTTGTCAAATGGTCGCTGCCTCCTAGTGGCAGGGTGAGACTACATGCCACTGGATGGAGATTCAAGTGGCAACATGATAGGAAAGCTGGTAGTATGGAAATTACGCTTTGCTGCATTAAGGTTGCAGTTCGAGTAATCTTTCCGTTGTGTCACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.3

Weight (kDa)

10.55

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 229, 326
AccB7I CCANNNNNTGG 1 cut(s) 621
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 1 cut(s) 465
AciI CCGC 9 cut(s) 142, 163, 277, 295, 298, 319, 333, 553, 721
AclWI GGATC 2 cut(s) 189, 224
AcoI YGGCCR 1 cut(s) 136
AcvI CACGTG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 301
AfiI CCNNNNNNNGG 4 cut(s) 314, 406, 593, 621
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 244, 631
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 653
AluI AGCT 1 cut(s) 653
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 598
Alw44I GTGCAC 1 cut(s) 520
AlwI GGATC 2 cut(s) 189, 224
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 4 cut(s) 136, 250, 373, 397
ApaLI GTGCAC 1 cut(s) 520
ApeKI GCWGC 4 cut(s) 423, 460, 583, 678
AspLEI GCGC 2 cut(s) 456, 465
AspS9I GGNCC 5 cut(s) 40, 47, 250, 373, 397
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 3 cut(s) 280, 613, 710
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 2 cut(s) 40, 47
BaeGI GKGCMC 2 cut(s) 232, 524
BaeI ACNNNNGTAYC 2 cut(s) 263, 296
BanI GGYRCC 2 cut(s) 229, 326
BbrPI CACGTG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 4 cut(s) 410, 447, 570, 665
BccI CCATC 4 cut(s) 128, 388, 490, 615
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 3 cut(s) 545, 591, 724
BisI GCNGC 9 cut(s) 143, 164, 296, 299, 424, 461, 554, 584, 679
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 9 cut(s) 144, 165, 297, 300, 425, 462, 555, 585, 680
Bme1390I CCNGG 2 cut(s) 44, 401
Bme18I GGWCC 2 cut(s) 40, 47
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 5 cut(s) 40, 47, 250, 373, 397
BmiI GGNNCC 3 cut(s) 48, 231, 328
BmrFI CCNGG 2 cut(s) 44, 401
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 179
BoxI GACNNNNGTC 2 cut(s) 45, 74
Bpu10I CCTNAGC 1 cut(s) 9
Bpu1102I GCTNAGC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 43, 150
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 406, 593, 621
Bse118I RCCGGY 2 cut(s) 138, 329
Bse1I ACTGG 2 cut(s) 174, 622
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 43, 150
BseGI GGATG 5 cut(s) 139, 160, 399, 501, 626
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 4 cut(s) 314, 406, 593, 621
BseMII CTCAG 2 cut(s) 23, 282
BseNI ACTGG 2 cut(s) 174, 622
BseSI GKGCMC 2 cut(s) 232, 524
BseXI GCAGC 4 cut(s) 410, 447, 570, 665
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 3 cut(s) 64, 239, 301
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 4 cut(s) 138, 252, 375, 399
BshNI GGYRCC 2 cut(s) 229, 326
BsiHKAI GWGCWC 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 3 cut(s) 139, 330, 400
BslFI GGGAC 2 cut(s) 140, 459
BslI CCNNNNNNNGG 4 cut(s) 314, 406, 593, 621
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 140, 459
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 4 cut(s) 138, 252, 375, 399
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 232, 524
Bsp143I GATC 4 cut(s) 51, 194, 200, 216
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 9 cut(s) 142, 163, 277, 295, 298, 319, 333, 553, 721
BspANI GGCC 4 cut(s) 138, 252, 375, 399
BspCNI CTCAG 2 cut(s) 22, 283
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 48, 231, 328
BspPI GGATC 2 cut(s) 189, 224
BspT107I GGYRCC 2 cut(s) 229, 326
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 138, 329
BsrI ACTGG 2 cut(s) 174, 622
BssAI RCCGGY 2 cut(s) 138, 329
BssECI CCNNGG 2 cut(s) 43, 150
BssMI GATC 4 cut(s) 51, 194, 200, 216
BssNI GRCGYC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 151, 260
BstACI GRCGYC 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 5 cut(s) 140, 254, 331, 351, 458
BstDEI CTNAG 2 cut(s) 9, 291
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 5 cut(s) 139, 160, 399, 501, 626
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 2 cut(s) 456, 465
BstKTI GATC 4 cut(s) 54, 197, 203, 219
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 51, 194, 200, 216
BstMWI GCNNNNNNNGC 7 cut(s) 14, 304, 359, 432, 460, 462, 539
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 2 cut(s) 460, 614
BstPAI GACNNNNGTC 2 cut(s) 45, 74
BstSCI CCNGG 2 cut(s) 42, 399
BstSLI GKGCMC 2 cut(s) 232, 524
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 410, 447, 570, 665
BsuRI GGCC 4 cut(s) 138, 252, 375, 399
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 5 cut(s) 139, 160, 399, 501, 626
BtsIMutI CAGTG 2 cut(s) 265, 615
Cac8I GCNNGC 5 cut(s) 140, 254, 331, 351, 458
CfoI GCGC 2 cut(s) 456, 465
Cfr10I RCCGGY 2 cut(s) 138, 329
Cfr13I GGNCC 5 cut(s) 40, 47, 250, 373, 397
CseI GACGC 1 cut(s) 290
CviAII CATG 3 cut(s) 457, 611, 641
DdeI CTNAG 2 cut(s) 9, 291
DpnI GATC 4 cut(s) 53, 196, 202, 218
DpnII GATC 4 cut(s) 51, 194, 200, 216
EaeI YGGCCR 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 40, 47
Eco72I CACGTG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 460, 614, 644
FaiI YATR 5 cut(s) 214, 458, 612, 642, 662
FaqI GGGAC 2 cut(s) 140, 459
FatI CATG 3 cut(s) 456, 610, 640
Fnu4HI GCNGC 9 cut(s) 143, 164, 296, 299, 424, 461, 554, 584, 679
FokI GGATG 5 cut(s) 146, 167, 406, 508, 633
Fsp4HI GCNGC 9 cut(s) 143, 164, 296, 299, 424, 461, 554, 584, 679
FspBI CTAG 3 cut(s) 545, 591, 724
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 2 cut(s) 455, 464
GluI GCNGC 9 cut(s) 143, 164, 296, 299, 424, 461, 554, 584, 679
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 4 cut(s) 138, 252, 375, 399
HapII CCGG 3 cut(s) 139, 330, 400
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 456, 465
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 3 cut(s) 460, 614, 644
Hin6I GCGC 2 cut(s) 454, 463
HinP1I GCGC 2 cut(s) 454, 463
HinfI GANTC 2 cut(s) 89, 627
HpaII CCGG 3 cut(s) 139, 330, 400
HphI GGTGA 3 cut(s) 280, 613, 710
Hpy166II GTNNAC 2 cut(s) 40, 522
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 11, 198
Hpy8I GTNNAC 2 cut(s) 40, 522
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 151, 260
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 8 cut(s) 81, 256, 282, 339, 480, 522, 681, 692
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 304, 359, 432, 460, 462, 539
HpyF3I CTNAG 2 cut(s) 9, 291
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 3 cut(s) 460, 614, 644
HspAI GCGC 2 cut(s) 454, 463
KroI GCCGGC 2 cut(s) 138, 329
KroNI GCCGGC 2 cut(s) 140, 331
Kzo9I GATC 4 cut(s) 51, 194, 200, 216
Lsp1109I GCAGC 4 cut(s) 410, 447, 570, 665
LweI GCATC 1 cut(s) 145
MaeI CTAG 3 cut(s) 545, 591, 724
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 86, 716
MalI GATC 4 cut(s) 53, 196, 202, 218
MbiI CCGCTC 1 cut(s) 295
MboI GATC 4 cut(s) 51, 194, 200, 216
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 232, 524
MluCI AATT 1 cut(s) 666
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 47, 93
MnlI CCTC 5 cut(s) 7, 176, 380, 386, 597
MroNI GCCGGC 2 cut(s) 138, 329
MseI TTAA 1 cut(s) 684
MspI CCGG 3 cut(s) 139, 330, 400
MspR9I CCNGG 2 cut(s) 44, 401
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 7 cut(s) 14, 304, 359, 432, 460, 462, 539
NaeI GCCGGC 2 cut(s) 140, 331
NciI CCSGG 1 cut(s) 401
NdeII GATC 4 cut(s) 51, 194, 200, 216
NgoMIV GCCGGC 2 cut(s) 138, 329
NlaIII CATG 3 cut(s) 460, 614, 644
NlaIV GGNNCC 3 cut(s) 48, 231, 328
NmuCI GTSAC 2 cut(s) 86, 716
NsbI TGCGCA 1 cut(s) 455
NspI RCATGY 2 cut(s) 460, 614
PaeI GCATGC 1 cut(s) 460
PctI GAATGC 1 cut(s) 480
PdiI GCCGGC 2 cut(s) 140, 331
PfeI GAWTC 1 cut(s) 627
PflMI CCANNNNNTGG 1 cut(s) 621
PkrI GCNGC 9 cut(s) 144, 165, 297, 300, 425, 462, 555, 585, 680
PleI GAGTC 1 cut(s) 83
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 84
PshAI GACNNNNGTC 2 cut(s) 45, 74
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 48, 231, 328
PspPI GGNCC 5 cut(s) 40, 47, 250, 373, 397
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 9 cut(s) 143, 164, 296, 299, 424, 461, 554, 584, 679
Sau3AI GATC 4 cut(s) 51, 194, 200, 216
Sau96I GGNCC 5 cut(s) 40, 47, 250, 373, 397
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 44, 401
SduI GDGCHC 2 cut(s) 232, 524
SetI ASST 5 cut(s) 45, 86, 212, 655, 690
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 2 cut(s) 40, 47
SphI GCATGC 1 cut(s) 460
Sse9I AATT 1 cut(s) 666
SsiI CCGC 9 cut(s) 142, 163, 277, 295, 298, 319, 333, 553, 721
SspMI CTAG 3 cut(s) 545, 591, 724
StyD4I CCNGG 2 cut(s) 42, 399
TaaI ACNGT 2 cut(s) 151, 260
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 526, 697
TaqII GACCGA 1 cut(s) 13
TasI AATT 1 cut(s) 666
TauI GCSGC 5 cut(s) 145, 166, 298, 301, 556
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 2 cut(s) 265, 622
TseFI GTSAC 2 cut(s) 86, 716
TseI GCWGC 4 cut(s) 423, 460, 583, 678
Tsp45I GTSAC 2 cut(s) 86, 716
TspGWI ACGGA 3 cut(s) 82, 146, 699
TspRI CASTG 2 cut(s) 265, 622
Van91I CCANNNNNTGG 1 cut(s) 621
VneI GTGCAC 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 40, 47
XceI RCATGY 2 cut(s) 460, 614
XspI CTAG 3 cut(s) 545, 591, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.