Domain of unknown function
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PK_Tyr_Ser-Thr | PF07714 | 28 - 240 | 1.9e-07 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 29 - 292 | 2.9e-21 | Protein kinase domain |
| VPS15-like_hel | PF22956 | 502 - 865 | 1.7e-123 | VPS15-like, helical domain |
| Beta-prop_WDR5 | PF25175 | 1131 - 1218 | 5.2e-08 | WDR5 beta-propeller domain |
| WD40_Prp19 | PF24814 | 1131 - 1337 | 3.2e-10 | Prp19 WD40 domain |
| WD40 | PF00400 | 1132 - 1169 | 1.3e-08 | WD domain, G-beta repeat |
| Beta-prop_THOC3 | PF25174 | 1135 - 1332 | 2.1e-09 | THOC3 beta-propeller domain |
| WD40_Gbeta | PF25391 | 1137 - 1345 | 2.4e-07 | G protein beta WD-40 repeat protein |
| WD40_WDHD1_1st | PF24817 | 1141 - 1342 | 2.7e-06 | WDHD1 first WD40 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 4145 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 31 |
| Acc16I | TGCGCA | 1 cut(s) | 2345 |
| Acc36I | ACCTGC | 6 cut(s) | 60, 69, 879, 2349, 4085, 4145 |
| AccB1I | GGYRCC | 2 cut(s) | 4133, 4192 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 800, 3374 |
| AccI | GTMKAC | 2 cut(s) | 881, 2512 |
| AccII | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| AccIII | TCCGGA | 2 cut(s) | 1750, 3871 |
| AclWI | GGATC | 7 cut(s) | 761, 2876, 3089, 3102, 3163, 3940, 4389 |
| AcoI | YGGCCR | 2 cut(s) | 2316, 2924 |
| AcsI | RAATTY | 7 cut(s) | 1120, 1405, 1743, 2716, 3757, 3841, 4225 |
| AcuI | CTGAAG | 5 cut(s) | 1319, 1491, 1598, 2031, 2057 |
| AcyI | GRCGYC | 2 cut(s) | 32, 38 |
| AdeI | CACNNNGTG | 1 cut(s) | 4147 |
| AfaI | GTAC | 6 cut(s) | 203, 2648, 2938, 2987, 3201, 3797 |
| AflIII | ACRYGT | 1 cut(s) | 2619 |
| AgeI | ACCGGT | 2 cut(s) | 569, 3420 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 64, 1432, 1950, 4250 |
| AjnI | CCWGG | 7 cut(s) | 27, 465, 1321, 2358, 4143, 4303, 4330 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3953, 3985 |
| Alw21I | GWGCWC | 6 cut(s) | 350, 2068, 2867, 3420, 3577, 3951 |
| Alw44I | GTGCAC | 1 cut(s) | 3573 |
| AlwI | GGATC | 7 cut(s) | 761, 2876, 3089, 3102, 3163, 3940, 4389 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2288, 3374, 4550 |
| Ama87I | CYCGRG | 2 cut(s) | 599, 2753 |
| Aor13HI | TCCGGA | 2 cut(s) | 1750, 3871 |
| ApaLI | GTGCAC | 1 cut(s) | 3573 |
| ApoI | RAATTY | 7 cut(s) | 1120, 1405, 1743, 2716, 3757, 3841, 4225 |
| AsiGI | ACCGGT | 2 cut(s) | 569, 3420 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1057, 1332, 2016, 2948, 3841 |
| AspLEI | GCGC | 9 cut(s) | 19, 177, 210, 242, 354, 1176, 2346, 2853, 3605 |
| AspS9I | GGNCC | 8 cut(s) | 151, 264, 2036, 3816, 3905, 4074, 4200, 4418 |
| AsuC2I | CCSGG | 1 cut(s) | 3596 |
| AsuHPI | GGTGA | 9 cut(s) | 242, 248, 455, 481, 635, 1208, 1337, 2828, 4349 |
| AsuNHI | GCTAGC | 2 cut(s) | 1037, 1076 |
| AvaI | CYCGRG | 2 cut(s) | 599, 2753 |
| AvaII | GGWCC | 3 cut(s) | 151, 2036, 3816 |
| BaeGI | GKGCMC | 1 cut(s) | 3577 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2969, 3002, 3629, 3662 |
| BalI | TGGCCA | 2 cut(s) | 2318, 2926 |
| BamHI | GGATCC | 1 cut(s) | 3094 |
| BanI | GGYRCC | 2 cut(s) | 4133, 4192 |
| BanII | GRGCYC | 1 cut(s) | 1136 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2195, 2227, 3726, 3758 |
| BauI | CACGAG | 3 cut(s) | 80, 3146, 3387 |
| BbsI | GAAGAC | 1 cut(s) | 1479 |
| Bbv12I | GWGCWC | 6 cut(s) | 350, 2068, 2867, 3420, 3577, 3951 |
| BceAI | ACGGC | 5 cut(s) | 49, 195, 3428, 3555, 4520 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1555, 1589 |
| BciT130I | CCWGG | 7 cut(s) | 29, 467, 1323, 2360, 4145, 4305, 4332 |
| BciVI | GTATCC | 2 cut(s) | 2346, 2970 |
| BclI | TGATCA | 2 cut(s) | 1366, 3454 |
| BcnI | CCSGG | 1 cut(s) | 3596 |
| BfmI | CTRYAG | 5 cut(s) | 678, 872, 2280, 3190, 4092 |
| BfoI | RGCGCY | 1 cut(s) | 211 |
| BfuAI | ACCTGC | 6 cut(s) | 60, 69, 879, 2349, 4085, 4145 |
| BfuI | GTATCC | 2 cut(s) | 2346, 2970 |
| BlpI | GCTNAGC | 2 cut(s) | 696, 1833 |
| BmcAI | AGTACT | 1 cut(s) | 2938 |
| Bme1390I | CCNGG | 8 cut(s) | 29, 467, 1323, 2360, 3596, 4145, 4305, 4332 |
| Bme18I | GGWCC | 3 cut(s) | 151, 2036, 3816 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 64, 1432, 1950, 4250 |
| BmeT110I | CYCGRG | 2 cut(s) | 599, 2753 |
| BmgT120I | GGNCC | 8 cut(s) | 151, 264, 2036, 3816, 3905, 4074, 4200, 4418 |
| BmrFI | CCNGG | 8 cut(s) | 29, 467, 1323, 2360, 3596, 4145, 4305, 4332 |
| BmrI | ACTGGG | 3 cut(s) | 1148, 1984, 4359 |
| BmtI | GCTAGC | 2 cut(s) | 1041, 1080 |
| BmuI | ACTGGG | 3 cut(s) | 1148, 1984, 4359 |
| BpiI | GAAGAC | 1 cut(s) | 1479 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4492, 4524 |
| BpmI | CTGGAG | 1 cut(s) | 3581 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 696, 1833 |
| BpuEI | CTTGAG | 4 cut(s) | 728, 1900, 2557, 3591 |
| BpuMI | CCSGG | 1 cut(s) | 3596 |
| Bsa29I | ATCGAT | 2 cut(s) | 189, 340 |
| BsaHI | GRCGYC | 2 cut(s) | 32, 38 |
| BsaI | GGTCTC | 2 cut(s) | 224, 3677 |
| BsaJI | CCNNGG | 9 cut(s) | 27, 1683, 2754, 3086, 3595, 4196, 4203, 4331, 4530 |
| BsaWI | WCCGGW | 5 cut(s) | 569, 841, 1750, 3420, 3871 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2124, 2154, 3373, 3403 |
| Bse118I | RCCGGY | 2 cut(s) | 569, 3420 |
| Bse1I | ACTGG | 9 cut(s) | 271, 1048, 1143, 1432, 1821, 1932, 1990, 3098, 4354 |
| Bse3DI | GCAATG | 6 cut(s) | 1113, 1540, 1650, 2860, 4108, 4316 |
| BseAI | TCCGGA | 2 cut(s) | 1750, 3871 |
| BseBI | CCWGG | 7 cut(s) | 29, 467, 1323, 2360, 4145, 4305, 4332 |
| BseCI | ATCGAT | 2 cut(s) | 189, 340 |
| BseDI | CCNNGG | 9 cut(s) | 27, 1683, 2754, 3086, 3595, 4196, 4203, 4331, 4530 |
| BseGI | GGATG | 7 cut(s) | 1065, 1225, 1369, 2837, 3096, 3311, 4308 |
| BseMI | GCAATG | 6 cut(s) | 1113, 1540, 1650, 2860, 4108, 4316 |
| BseMII | CTCAG | 8 cut(s) | 376, 687, 984, 1043, 1106, 2526, 3291, 4179 |
| BseNI | ACTGG | 9 cut(s) | 271, 1048, 1143, 1432, 1821, 1932, 1990, 3098, 4354 |
| BseRI | GAGGAG | 5 cut(s) | 1573, 2740, 3890, 4032, 4284 |
| BseSI | GKGCMC | 1 cut(s) | 3577 |
| BsgI | GTGCAG | 4 cut(s) | 38, 1698, 2481, 4508 |
| Bsh1236I | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| BshNI | GGYRCC | 2 cut(s) | 4133, 4192 |
| BshTI | ACCGGT | 2 cut(s) | 569, 3420 |
| BshVI | ATCGAT | 2 cut(s) | 189, 340 |
| BsiHKAI | GWGCWC | 6 cut(s) | 350, 2068, 2867, 3420, 3577, 3951 |
| BsiHKCI | CYCGRG | 2 cut(s) | 599, 2753 |
| BsiSI | CCGG | 6 cut(s) | 570, 842, 1751, 3421, 3595, 3872 |
| BslFI | GGGAC | 3 cut(s) | 2022, 2736, 3829 |
| BsmBI | CGTCTC | 5 cut(s) | 218, 278, 1682, 4237, 4495 |
| BsmFI | GGGAC | 3 cut(s) | 2022, 2736, 3829 |
| BsmI | GAATGC | 2 cut(s) | 4126, 4299 |
| Bso31I | GGTCTC | 2 cut(s) | 224, 3677 |
| BsoBI | CYCGRG | 2 cut(s) | 599, 2753 |
| Bsp1286I | GDGCHC | 7 cut(s) | 350, 1136, 2068, 2867, 3420, 3577, 3951 |
| Bsp13I | TCCGGA | 2 cut(s) | 1750, 3871 |
| Bsp1407I | TGTACA | 1 cut(s) | 3795 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 696, 1833 |
| Bsp19I | CCATGG | 1 cut(s) | 3086 |
| BspCNI | CTCAG | 8 cut(s) | 375, 688, 985, 1042, 1105, 2527, 3292, 4180 |
| BspDI | ATCGAT | 2 cut(s) | 189, 340 |
| BspEI | TCCGGA | 2 cut(s) | 1750, 3871 |
| BspFNI | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| BspHI | TCATGA | 1 cut(s) | 2878 |
| BspMAI | CTGCAG | 2 cut(s) | 876, 4096 |
| BspMI | ACCTGC | 6 cut(s) | 60, 69, 879, 2349, 4085, 4145 |
| BspOI | GCTAGC | 2 cut(s) | 1041, 1080 |
| BspPI | GGATC | 7 cut(s) | 761, 2876, 3089, 3102, 3163, 3940, 4389 |
| BspQI | GCTCTTC | 1 cut(s) | 2056 |
| BspT107I | GGYRCC | 2 cut(s) | 4133, 4192 |
| BspTNI | GGTCTC | 2 cut(s) | 224, 3677 |
| BsrDI | GCAATG | 6 cut(s) | 1113, 1540, 1650, 2860, 4108, 4316 |
| BsrFI | RCCGGY | 2 cut(s) | 569, 3420 |
| BsrGI | TGTACA | 1 cut(s) | 3795 |
| BsrI | ACTGG | 9 cut(s) | 271, 1048, 1143, 1432, 1821, 1932, 1990, 3098, 4354 |
| BssAI | RCCGGY | 2 cut(s) | 569, 3420 |
| BssECI | CCNNGG | 9 cut(s) | 27, 1683, 2754, 3086, 3595, 4196, 4203, 4331, 4530 |
| BssNAI | GTATAC | 1 cut(s) | 882 |
| BssNI | GRCGYC | 2 cut(s) | 32, 38 |
| BssSI | CACGAG | 3 cut(s) | 80, 3146, 3387 |
| BssT1I | CCWWGG | 5 cut(s) | 1683, 3086, 4196, 4203, 4530 |
| Bst1107I | GTATAC | 1 cut(s) | 882 |
| Bst2BI | CACGAG | 3 cut(s) | 80, 3146, 3387 |
| Bst2UI | CCWGG | 7 cut(s) | 29, 467, 1323, 2360, 4145, 4305, 4332 |
| Bst4CI | ACNGT | 9 cut(s) | 417, 443, 1478, 2312, 2869, 2941, 3493, 4409, 4464 |
| Bst6I | CTCTTC | 4 cut(s) | 221, 2056, 3046, 3349 |
| BstACI | GRCGYC | 2 cut(s) | 32, 38 |
| BstAPI | GCANNNNNTGC | 9 cut(s) | 61, 644, 1847, 1985, 2091, 2451, 4486, 4541, 4550 |
| BstAUI | TGTACA | 1 cut(s) | 3795 |
| BstDSI | CCRYGG | 1 cut(s) | 3086 |
| BstEII | GGTNACC | 1 cut(s) | 2336 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 158 |
| BstF5I | GGATG | 7 cut(s) | 1065, 1225, 1369, 2837, 3096, 3311, 4308 |
| BstFNI | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| BstH2I | RGCGCY | 1 cut(s) | 211 |
| BstHHI | GCGC | 9 cut(s) | 19, 177, 210, 242, 354, 1176, 2346, 2853, 3605 |
| BstNI | CCWGG | 7 cut(s) | 29, 467, 1323, 2360, 4145, 4305, 4332 |
| BstNSI | RCATGY | 3 cut(s) | 1315, 2623, 3627 |
| BstPI | GGTNACC | 1 cut(s) | 2336 |
| BstSCI | CCNGG | 8 cut(s) | 27, 465, 1321, 2358, 3594, 4143, 4303, 4330 |
| BstSFI | CTRYAG | 5 cut(s) | 678, 872, 2280, 3190, 4092 |
| BstSLI | GKGCMC | 1 cut(s) | 3577 |
| BstUI | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| BstV2I | GAAGAC | 1 cut(s) | 1479 |
| BstX2I | RGATCY | 2 cut(s) | 3094, 3932 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1298, 3812 |
| BstYI | RGATCY | 2 cut(s) | 3094, 3932 |
| BstZ17I | GTATAC | 1 cut(s) | 882 |
| Bsu15I | ATCGAT | 2 cut(s) | 189, 340 |
| BsuI | GTATCC | 2 cut(s) | 2346, 2970 |
| BsuTUI | ATCGAT | 2 cut(s) | 189, 340 |
| BtgI | CCRYGG | 1 cut(s) | 3086 |
| BtsCI | GGATG | 7 cut(s) | 1065, 1225, 1369, 2837, 3096, 3311, 4308 |
| BtsI | GCAGTG | 3 cut(s) | 2452, 3018, 3178 |
| BtsIMutI | CAGTG | 9 cut(s) | 134, 422, 1041, 1136, 2452, 3018, 3178, 3489, 4554 |
| BveI | ACCTGC | 6 cut(s) | 60, 69, 879, 2349, 4085, 4145 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2288, 3374, 4550 |
| CciI | TCATGA | 1 cut(s) | 2878 |
| CfoI | GCGC | 9 cut(s) | 19, 177, 210, 242, 354, 1176, 2346, 2853, 3605 |
| Cfr10I | RCCGGY | 2 cut(s) | 569, 3420 |
| Cfr13I | GGNCC | 8 cut(s) | 151, 264, 2036, 3816, 3905, 4074, 4200, 4418 |
| ClaI | ATCGAT | 2 cut(s) | 189, 340 |
| CseI | GACGC | 4 cut(s) | 21, 27, 117, 1043 |
| CsiI | ACCWGGT | 1 cut(s) | 4143 |
| Csp6I | GTAC | 6 cut(s) | 202, 2647, 2937, 2986, 3200, 3796 |
| CspAI | ACCGGT | 2 cut(s) | 569, 3420 |
| CviQI | GTAC | 6 cut(s) | 202, 2647, 2937, 2986, 3200, 3796 |
| DraIII | CACNNNGTG | 1 cut(s) | 4147 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 31 |
| DriI | GACNNNNNGTC | 4 cut(s) | 64, 1432, 1950, 4250 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 31 |
| EaeI | YGGCCR | 2 cut(s) | 2316, 2924 |
| Eam1104I | CTCTTC | 4 cut(s) | 221, 2056, 3046, 3349 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 64, 1432, 1950, 4250 |
| EarI | CTCTTC | 4 cut(s) | 221, 2056, 3046, 3349 |
| Eco130I | CCWWGG | 5 cut(s) | 1683, 3086, 4196, 4203, 4530 |
| Eco147I | AGGCCT | 1 cut(s) | 3385 |
| Eco24I | GRGCYC | 1 cut(s) | 1136 |
| Eco31I | GGTCTC | 2 cut(s) | 224, 3677 |
| Eco32I | GATATC | 4 cut(s) | 670, 1201, 2080, 3712 |
| Eco47I | GGWCC | 3 cut(s) | 151, 2036, 3816 |
| Eco57I | CTGAAG | 5 cut(s) | 1319, 1491, 1598, 2031, 2057 |
| Eco88I | CYCGRG | 2 cut(s) | 599, 2753 |
| Eco91I | GGTNACC | 1 cut(s) | 2336 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 158 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2036, 3816, 3905, 4074 |
| EcoO65I | GGTNACC | 1 cut(s) | 2336 |
| EcoRI | GAATTC | 3 cut(s) | 1405, 2716, 3841 |
| EcoRII | CCWGG | 7 cut(s) | 27, 465, 1321, 2358, 4143, 4303, 4330 |
| EcoRV | GATATC | 4 cut(s) | 670, 1201, 2080, 3712 |
| EcoT14I | CCWWGG | 5 cut(s) | 1683, 3086, 4196, 4203, 4530 |
| EcoT22I | ATGCAT | 3 cut(s) | 1354, 2305, 3313 |
| EcoT38I | GRGCYC | 1 cut(s) | 1136 |
| ErhI | CCWWGG | 5 cut(s) | 1683, 3086, 4196, 4203, 4530 |
| Esp3I | CGTCTC | 5 cut(s) | 218, 278, 1682, 4237, 4495 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 218, 250, 2229, 2261, 3535, 3567, 4098, 4130 |
| FaqI | GGGAC | 3 cut(s) | 2022, 2736, 3829 |
| FauI | CCCGC | 1 cut(s) | 2152 |
| FauNDI | CATATG | 3 cut(s) | 825, 1633, 3642 |
| FbaI | TGATCA | 2 cut(s) | 1366, 3454 |
| FblI | GTMKAC | 2 cut(s) | 881, 2512 |
| FokI | GGATG | 7 cut(s) | 1052, 1232, 1356, 2844, 3103, 3298, 4295 |
| FriOI | GRGCYC | 1 cut(s) | 1136 |
| FspI | TGCGCA | 1 cut(s) | 2345 |
| GlaI | GCGC | 9 cut(s) | 18, 176, 209, 241, 353, 1175, 2345, 2852, 3604 |
| GsuI | CTGGAG | 1 cut(s) | 3581 |
| HaeII | RGCGCY | 1 cut(s) | 211 |
| HapII | CCGG | 6 cut(s) | 570, 842, 1751, 3421, 3595, 3872 |
| HgaI | GACGC | 4 cut(s) | 21, 27, 117, 1043 |
| HhaI | GCGC | 9 cut(s) | 19, 177, 210, 242, 354, 1176, 2346, 2853, 3605 |
| Hin1I | GRCGYC | 2 cut(s) | 32, 38 |
| Hin6I | GCGC | 9 cut(s) | 17, 175, 208, 240, 352, 1174, 2344, 2851, 3603 |
| HinP1I | GCGC | 9 cut(s) | 17, 175, 208, 240, 352, 1174, 2344, 2851, 3603 |
| HincII | GTYRAC | 5 cut(s) | 776, 1026, 2872, 4347, 4524 |
| HindII | GTYRAC | 5 cut(s) | 776, 1026, 2872, 4347, 4524 |
| HindIII | AAGCTT | 1 cut(s) | 2842 |
| HpaI | GTTAAC | 1 cut(s) | 4347 |
| HpaII | CCGG | 6 cut(s) | 570, 842, 1751, 3421, 3595, 3872 |
| HphI | GGTGA | 9 cut(s) | 242, 248, 455, 481, 635, 1208, 1337, 2828, 4349 |
| Hpy166II | GTNNAC | 9 cut(s) | 776, 882, 1026, 1867, 2513, 2872, 3575, 4347, 4524 |
| Hpy8I | GTNNAC | 9 cut(s) | 776, 882, 1026, 1867, 2513, 2872, 3575, 4347, 4524 |
| Hpy99I | CGWCG | 5 cut(s) | 37, 43, 70, 143, 4377 |
| HpyCH4III | ACNGT | 9 cut(s) | 417, 443, 1478, 2312, 2869, 2941, 3493, 4409, 4464 |
| HpyCH4IV | ACGT | 2 cut(s) | 1691, 4372 |
| HpySE526I | ACGT | 2 cut(s) | 1691, 4372 |
| Hsp92I | GRCGYC | 2 cut(s) | 32, 38 |
| HspAI | GCGC | 9 cut(s) | 17, 175, 208, 240, 352, 1174, 2344, 2851, 3603 |
| KflI | GGGWCCC | 2 cut(s) | 2036, 3816 |
| Kpn2I | TCCGGA | 2 cut(s) | 1750, 3871 |
| Ksp22I | TGATCA | 2 cut(s) | 1366, 3454 |
| KspAI | GTTAAC | 1 cut(s) | 4347 |
| LguI | GCTCTTC | 1 cut(s) | 2056 |
| LmnI | GCTCC | 7 cut(s) | 601, 1962, 2491, 2727, 3034, 3597, 3620 |
| MabI | ACCWGGT | 1 cut(s) | 4143 |
| MaeII | ACGT | 2 cut(s) | 1691, 4372 |
| MaeIII | GTNAC | 8 cut(s) | 396, 437, 469, 1697, 2130, 2336, 3898, 4403 |
| MfeI | CAATTG | 1 cut(s) | 1665 |
| MflI | RGATCY | 2 cut(s) | 3094, 3932 |
| MhlI | GDGCHC | 7 cut(s) | 350, 1136, 2068, 2867, 3420, 3577, 3951 |
| MlsI | TGGCCA | 2 cut(s) | 2318, 2926 |
| MluNI | TGGCCA | 2 cut(s) | 2318, 2926 |
| MlyI | GAGTC | 2 cut(s) | 176, 3032 |
| MmeI | TCCRAC | 7 cut(s) | 21, 816, 2604, 3359, 3498, 3598, 4417 |
| Mox20I | TGGCCA | 2 cut(s) | 2318, 2926 |
| Mph1103I | ATGCAT | 3 cut(s) | 1354, 2305, 3313 |
| MroI | TCCGGA | 2 cut(s) | 1750, 3871 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1057, 1332, 2016, 2948, 3841 |
| MscI | TGGCCA | 2 cut(s) | 2318, 2926 |
| MseI | TTAA | 7 cut(s) | 450, 653, 1224, 1553, 1907, 4346, 4605 |
| MslI | CAYNNNNRTG | 2 cut(s) | 621, 2389 |
| Msp20I | TGGCCA | 2 cut(s) | 2318, 2926 |
| MspA1I | CMGCKG | 1 cut(s) | 4547 |
| MspI | CCGG | 6 cut(s) | 570, 842, 1751, 3421, 3595, 3872 |
| MspR9I | CCNGG | 8 cut(s) | 29, 467, 1323, 2360, 3596, 4145, 4305, 4332 |
| MunI | CAATTG | 1 cut(s) | 1665 |
| Mva1269I | GAATGC | 2 cut(s) | 4126, 4299 |
| MvaI | CCWGG | 7 cut(s) | 29, 467, 1323, 2360, 4145, 4305, 4332 |
| MvnI | CGCG | 9 cut(s) | 17, 19, 105, 177, 198, 240, 352, 1176, 2851 |
| NciI | CCSGG | 1 cut(s) | 3596 |
| NcoI | CCATGG | 1 cut(s) | 3086 |
| NdeI | CATATG | 3 cut(s) | 825, 1633, 3642 |
| NheI | GCTAGC | 2 cut(s) | 1037, 1076 |
| NmuCI | GTSAC | 3 cut(s) | 437, 469, 1697 |
| NsbI | TGCGCA | 1 cut(s) | 2345 |
| NsiI | ATGCAT | 3 cut(s) | 1354, 2305, 3313 |
| NspI | RCATGY | 3 cut(s) | 1315, 2623, 3627 |
| PaeI | GCATGC | 1 cut(s) | 1315 |
| PagI | TCATGA | 1 cut(s) | 2878 |
| PaqCI | CACCTGC | 1 cut(s) | 4145 |
| PceI | AGGCCT | 1 cut(s) | 3385 |
| PciI | ACATGT | 1 cut(s) | 2619 |
| PciSI | GCTCTTC | 1 cut(s) | 2056 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 29, 195 |
| PctI | GAATGC | 2 cut(s) | 4126, 4299 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1057, 1332, 2016, 2948, 3841 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 800, 3374 |
| PfoI | TCCNGGA | 1 cut(s) | 2358 |
| PinAI | ACCGGT | 2 cut(s) | 569, 3420 |
| PleI | GAGTC | 2 cut(s) | 176, 3032 |
| PpsI | GAGTC | 2 cut(s) | 176, 3032 |
| PpuMI | RGGWCCY | 2 cut(s) | 2036, 3816 |
| PscI | ACATGT | 1 cut(s) | 2619 |
| Psp5II | RGGWCCY | 2 cut(s) | 2036, 3816 |
| Psp6I | CCWGG | 7 cut(s) | 27, 465, 1321, 2358, 4143, 4303, 4330 |
| PspEI | GGTNACC | 1 cut(s) | 2336 |
| PspGI | CCWGG | 7 cut(s) | 27, 465, 1321, 2358, 4143, 4303, 4330 |
| PspPI | GGNCC | 8 cut(s) | 151, 264, 2036, 3816, 3905, 4074, 4200, 4418 |
| PspPPI | RGGWCCY | 2 cut(s) | 2036, 3816 |
| PstI | CTGCAG | 2 cut(s) | 876, 4096 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2288, 3374, 4550 |
| PsuI | RGATCY | 2 cut(s) | 3094, 3932 |
| PvuII | CAGCTG | 1 cut(s) | 4547 |
| RsaI | GTAC | 6 cut(s) | 203, 2648, 2938, 2987, 3201, 3797 |
| RsaNI | GTAC | 6 cut(s) | 202, 2647, 2937, 2986, 3200, 3796 |
| RseI | CAYNNNNRTG | 2 cut(s) | 621, 2389 |
| SapI | GCTCTTC | 1 cut(s) | 2056 |
| SaqAI | TTAA | 7 cut(s) | 450, 653, 1224, 1553, 1907, 4346, 4605 |
| Sau96I | GGNCC | 8 cut(s) | 151, 264, 2036, 3816, 3905, 4074, 4200, 4418 |
| SbfI | CCTGCAGG | 1 cut(s) | 876 |
| ScaI | AGTACT | 1 cut(s) | 2938 |
| SchI | GAGTC | 2 cut(s) | 176, 3032 |
| ScrFI | CCNGG | 8 cut(s) | 29, 467, 1323, 2360, 3596, 4145, 4305, 4332 |
| SdaI | CCTGCAGG | 1 cut(s) | 876 |
| SduI | GDGCHC | 7 cut(s) | 350, 1136, 2068, 2867, 3420, 3577, 3951 |
| SexAI | ACCWGGT | 1 cut(s) | 4143 |
| SfcI | CTRYAG | 5 cut(s) | 678, 872, 2280, 3190, 4092 |
| SgrAI | CRCCGGYG | 1 cut(s) | 569 |
| SinI | GGWCC | 3 cut(s) | 151, 2036, 3816 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 621, 2389 |
| SmlI | CTYRAG | 4 cut(s) | 707, 1879, 2572, 3606 |
| SmoI | CTYRAG | 4 cut(s) | 707, 1879, 2572, 3606 |
| SphI | GCATGC | 1 cut(s) | 1315 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 876 |
| SseBI | AGGCCT | 1 cut(s) | 3385 |
| StuI | AGGCCT | 1 cut(s) | 3385 |
| StyD4I | CCNGG | 8 cut(s) | 27, 465, 1321, 2358, 3594, 4143, 4303, 4330 |
| StyI | CCWWGG | 5 cut(s) | 1683, 3086, 4196, 4203, 4530 |
| TaaI | ACNGT | 9 cut(s) | 417, 443, 1478, 2312, 2869, 2941, 3493, 4409, 4464 |
| TaiI | ACGT | 2 cut(s) | 1694, 4375 |
| TatI | WGTACW | 4 cut(s) | 2936, 2985, 3199, 3795 |
| TauI | GCSGC | 1 cut(s) | 180 |
| Tru1I | TTAA | 7 cut(s) | 450, 653, 1224, 1553, 1907, 4346, 4605 |
| Tru9I | TTAA | 7 cut(s) | 450, 653, 1224, 1553, 1907, 4346, 4605 |
| TscAI | CASTG | 9 cut(s) | 134, 422, 1048, 1143, 2452, 3018, 3178, 3496, 4561 |
| TseFI | GTSAC | 3 cut(s) | 437, 469, 1697 |
| Tsp45I | GTSAC | 3 cut(s) | 437, 469, 1697 |
| TspGWI | ACGGA | 5 cut(s) | 302, 519, 903, 4261, 4301 |
| TspRI | CASTG | 9 cut(s) | 134, 422, 1048, 1143, 2452, 3018, 3178, 3496, 4561 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 800, 3374 |
| VneI | GTGCAC | 1 cut(s) | 3573 |
| VpaK11BI | GGWCC | 3 cut(s) | 151, 2036, 3816 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 158 |
| XapI | RAATTY | 7 cut(s) | 1120, 1405, 1743, 2716, 3757, 3841, 4225 |
| XbaI | TCTAGA | 1 cut(s) | 2596 |
| XceI | RCATGY | 3 cut(s) | 1315, 2623, 3627 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3375 |
| XmiI | GTMKAC | 2 cut(s) | 881, 2512 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1057, 1332, 2016, 2948, 3841 |
| ZrmI | AGTACT | 1 cut(s) | 2938 |
| Zsp2I | ATGCAT | 3 cut(s) | 1354, 2305, 3313 |