protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 20 |
| AclWI | GGATC | 2 cut(s) | 175, 188 |
| AcyI | GRCGYC | 1 cut(s) | 385 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 20 |
| AgsI | TTSAA | 1 cut(s) | 206 |
| AjnI | CCWGG | 1 cut(s) | 13 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 165, 197 |
| AluBI | AGCT | 2 cut(s) | 137, 191 |
| AluI | AGCT | 2 cut(s) | 137, 191 |
| Alw26I | GTCTC | 1 cut(s) | 308 |
| AlwI | GGATC | 2 cut(s) | 175, 188 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 239, 350 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| AseI | ATTAAT | 1 cut(s) | 369 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 1 cut(s) | 240 |
| AsuC2I | CCSGG | 2 cut(s) | 215, 354 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 82 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 135, 168 |
| BamHI | GGATCC | 1 cut(s) | 180 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 1 cut(s) | 15 |
| BcnI | CCSGG | 2 cut(s) | 215, 354 |
| BcoDI | GTCTC | 1 cut(s) | 308 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| Bme1390I | CCNGG | 3 cut(s) | 15, 215, 354 |
| BmgT120I | GGNCC | 1 cut(s) | 240 |
| BmiI | GGNNCC | 1 cut(s) | 182 |
| BmrFI | CCNGG | 3 cut(s) | 15, 215, 354 |
| BmsI | GCATC | 2 cut(s) | 14, 167 |
| BpuMI | CCSGG | 2 cut(s) | 215, 354 |
| Bsa29I | ATCGAT | 1 cut(s) | 408 |
| BsaHI | GRCGYC | 1 cut(s) | 385 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 20 |
| Bse1I | ACTGG | 3 cut(s) | 25, 182, 257 |
| Bse3DI | GCAATG | 1 cut(s) | 130 |
| BseBI | CCWGG | 1 cut(s) | 15 |
| BseCI | ATCGAT | 1 cut(s) | 408 |
| BseGI | GGATG | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BseMI | GCAATG | 1 cut(s) | 130 |
| BseMII | CTCAG | 1 cut(s) | 326 |
| BseNI | ACTGG | 3 cut(s) | 25, 182, 257 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BshFI | GGCC | 2 cut(s) | 241, 352 |
| BshVI | ATCGAT | 1 cut(s) | 408 |
| BsiSI | CCGG | 2 cut(s) | 214, 353 |
| BslFI | GGGAC | 1 cut(s) | 372 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BsmAI | GTCTC | 1 cut(s) | 308 |
| BsmFI | GGGAC | 1 cut(s) | 372 |
| BsnI | GGCC | 2 cut(s) | 241, 352 |
| Bsp143I | GATC | 3 cut(s) | 31, 180, 405 |
| BspANI | GGCC | 2 cut(s) | 241, 352 |
| BspCNI | CTCAG | 1 cut(s) | 327 |
| BspDI | ATCGAT | 1 cut(s) | 408 |
| BspLI | GGNNCC | 1 cut(s) | 182 |
| BspPI | GGATC | 2 cut(s) | 175, 188 |
| BsrDI | GCAATG | 1 cut(s) | 130 |
| BsrI | ACTGG | 3 cut(s) | 25, 182, 257 |
| BssMI | GATC | 3 cut(s) | 31, 180, 405 |
| BssNI | GRCGYC | 1 cut(s) | 385 |
| Bst2UI | CCWGG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 1 cut(s) | 148 |
| BstACI | GRCGYC | 1 cut(s) | 385 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 24, 164 |
| BstDEI | CTNAG | 1 cut(s) | 335 |
| BstF5I | GGATG | 1 cut(s) | 29 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstKTI | GATC | 3 cut(s) | 34, 183, 408 |
| BstMAI | GTCTC | 1 cut(s) | 308 |
| BstMBI | GATC | 3 cut(s) | 31, 180, 405 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 24, 164 |
| BstNI | CCWGG | 1 cut(s) | 15 |
| BstSCI | CCNGG | 3 cut(s) | 13, 213, 352 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| Bsu15I | ATCGAT | 1 cut(s) | 408 |
| BsuRI | GGCC | 2 cut(s) | 241, 352 |
| BsuTUI | ATCGAT | 1 cut(s) | 408 |
| BtsCI | GGATG | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 2 cut(s) | 18, 175 |
| CaiI | CAGNNNCTG | 1 cut(s) | 20 |
| CfoI | GCGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 1 cut(s) | 240 |
| ClaI | ATCGAT | 1 cut(s) | 408 |
| CseI | GACGC | 1 cut(s) | 374 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviAII | CATG | 4 cut(s) | 49, 91, 199, 323 |
| CviJI | RGCY | 7 cut(s) | 47, 137, 191, 241, 269, 329, 352 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 137, 191, 241, 269, 329, 352 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DdeI | CTNAG | 1 cut(s) | 335 |
| DpnI | GATC | 3 cut(s) | 33, 182, 407 |
| DpnII | GATC | 3 cut(s) | 31, 180, 405 |
| EcoRII | CCWGG | 1 cut(s) | 13 |
| FaeI | CATG | 4 cut(s) | 52, 94, 202, 326 |
| FaiI | YATR | 6 cut(s) | 50, 92, 200, 252, 324, 374 |
| FaqI | GGGAC | 1 cut(s) | 372 |
| FatI | CATG | 4 cut(s) | 48, 90, 198, 322 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 1 cut(s) | 36 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| FspBI | CTAG | 1 cut(s) | 140 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GluI | GCNGC | 1 cut(s) | 45 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HaeIII | GGCC | 2 cut(s) | 241, 352 |
| HapII | CCGG | 2 cut(s) | 214, 353 |
| HgaI | GACGC | 1 cut(s) | 374 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin1I | GRCGYC | 1 cut(s) | 385 |
| Hin1II | CATG | 4 cut(s) | 52, 94, 202, 326 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HinfI | GANTC | 1 cut(s) | 316 |
| HpaII | CCGG | 2 cut(s) | 214, 353 |
| HphI | GGTGA | 2 cut(s) | 29, 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 140 |
| HpyAV | CCTTC | 1 cut(s) | 342 |
| HpyCH4III | ACNGT | 1 cut(s) | 148 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 298 |
| HpyCH4V | TGCA | 3 cut(s) | 27, 158, 167 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 24, 164 |
| HpyF3I | CTNAG | 1 cut(s) | 335 |
| HpySE526I | ACGT | 2 cut(s) | 60, 298 |
| Hsp92I | GRCGYC | 1 cut(s) | 385 |
| Hsp92II | CATG | 4 cut(s) | 52, 94, 202, 326 |
| HspAI | GCGC | 1 cut(s) | 357 |
| Kzo9I | GATC | 3 cut(s) | 31, 180, 405 |
| LpnPI | CCDG | 7 cut(s) | 6, 27, 163, 227, 270, 326, 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| LweI | GCATC | 2 cut(s) | 14, 167 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MaeII | ACGT | 2 cut(s) | 60, 298 |
| MaeIII | GTNAC | 1 cut(s) | 338 |
| MalI | GATC | 3 cut(s) | 33, 182, 407 |
| MboI | GATC | 3 cut(s) | 31, 180, 405 |
| MboII | GAAGA | 3 cut(s) | 26, 110, 113 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MluCI | AATT | 1 cut(s) | 9 |
| MlyI | GAGTC | 1 cut(s) | 310 |
| MnlI | CCTC | 2 cut(s) | 258, 319 |
| MseI | TTAA | 3 cut(s) | 225, 369, 412 |
| MspI | CCGG | 2 cut(s) | 214, 353 |
| MspR9I | CCNGG | 3 cut(s) | 15, 215, 354 |
| MvaI | CCWGG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 24, 164 |
| NciI | CCSGG | 2 cut(s) | 215, 354 |
| NdeII | GATC | 3 cut(s) | 31, 180, 405 |
| NlaIII | CATG | 4 cut(s) | 52, 94, 202, 326 |
| NlaIV | GGNNCC | 1 cut(s) | 182 |
| NmuCI | GTSAC | 1 cut(s) | 338 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 20 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| PshBI | ATTAAT | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 1 cut(s) | 182 |
| PspPI | GGNCC | 1 cut(s) | 240 |
| PstNI | CAGNNNCTG | 1 cut(s) | 20 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| SaqAI | TTAA | 3 cut(s) | 225, 369, 412 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 3 cut(s) | 31, 180, 405 |
| Sau96I | GGNCC | 1 cut(s) | 240 |
| SchI | GAGTC | 1 cut(s) | 310 |
| ScrFI | CCNGG | 3 cut(s) | 15, 215, 354 |
| SetI | ASST | 5 cut(s) | 63, 72, 139, 193, 301 |
| SfaNI | GCATC | 2 cut(s) | 14, 167 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SspMI | CTAG | 1 cut(s) | 140 |
| StyD4I | CCNGG | 3 cut(s) | 13, 213, 352 |
| TaaI | ACNGT | 1 cut(s) | 148 |
| TaiI | ACGT | 2 cut(s) | 63, 301 |
| TaqI | TCGA | 2 cut(s) | 277, 408 |
| TasI | AATT | 1 cut(s) | 9 |
| Tru1I | TTAA | 3 cut(s) | 225, 369, 412 |
| Tru9I | TTAA | 3 cut(s) | 225, 369, 412 |
| TscAI | CASTG | 2 cut(s) | 25, 182 |
| TseFI | GTSAC | 1 cut(s) | 338 |
| TseI | GCWGC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 1 cut(s) | 338 |
| TspDTI | ATGAA | 1 cut(s) | 65 |
| TspRI | CASTG | 2 cut(s) | 25, 182 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 20 |
| VspI | ATTAAT | 1 cut(s) | 369 |
| XbaI | TCTAGA | 1 cut(s) | 139 |
| XspI | CTAG | 1 cut(s) | 140 |