protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 176 - 287 | 2.6e-24 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 162 |
| AccII | CGCG | 1 cut(s) | 824 |
| AciI | CCGC | 3 cut(s) | 342, 345, 824 |
| AclI | AACGTT | 1 cut(s) | 418 |
| AclWI | GGATC | 2 cut(s) | 16, 29 |
| AcsI | RAATTY | 1 cut(s) | 29 |
| AcuI | CTGAAG | 2 cut(s) | 696, 831 |
| AcvI | CACGTG | 1 cut(s) | 476 |
| AdeI | CACNNNGTG | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 18 |
| AflII | CTTAAG | 1 cut(s) | 646 |
| AgsI | TTSAA | 4 cut(s) | 29, 206, 218, 406 |
| AjnI | CCWGG | 1 cut(s) | 607 |
| AluBI | AGCT | 2 cut(s) | 374, 839 |
| AluI | AGCT | 2 cut(s) | 374, 839 |
| AlwI | GGATC | 2 cut(s) | 16, 29 |
| AoxI | GGCC | 5 cut(s) | 9, 190, 796, 1013, 1038 |
| ApeKI | GCWGC | 4 cut(s) | 316, 371, 590, 593 |
| ApoI | RAATTY | 1 cut(s) | 29 |
| AseI | ATTAAT | 1 cut(s) | 354 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 3 cut(s) | 169, 520, 530 |
| BamHI | GGATCC | 1 cut(s) | 21 |
| BanII | GRGCYC | 1 cut(s) | 568 |
| BbrPI | CACGTG | 1 cut(s) | 476 |
| BbsI | GAAGAC | 2 cut(s) | 626, 1029 |
| BbvI | GCAGC | 4 cut(s) | 303, 383, 577, 605 |
| BccI | CCATC | 1 cut(s) | 827 |
| BciT130I | CCWGG | 1 cut(s) | 609 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BfaI | CTAG | 3 cut(s) | 107, 257, 288 |
| BfmI | CTRYAG | 2 cut(s) | 432, 591 |
| BfrI | CTTAAG | 1 cut(s) | 646 |
| BisI | GCNGC | 6 cut(s) | 317, 345, 372, 591, 594, 825 |
| BlsI | GCNGC | 6 cut(s) | 318, 346, 373, 592, 595, 826 |
| Bme1390I | CCNGG | 1 cut(s) | 609 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 2 cut(s) | 23, 606 |
| BmrFI | CCNGG | 1 cut(s) | 609 |
| BmsI | GCATC | 2 cut(s) | 927, 932 |
| BpiI | GAAGAC | 2 cut(s) | 626, 1029 |
| BpuEI | CTTGAG | 1 cut(s) | 977 |
| BsaAI | YACGTR | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 1 cut(s) | 489 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 972, 1002 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 18 |
| Bse1I | ACTGG | 1 cut(s) | 917 |
| Bse3DI | GCAATG | 4 cut(s) | 105, 404, 534, 834 |
| BseBI | CCWGG | 1 cut(s) | 609 |
| BseDI | CCNNGG | 1 cut(s) | 489 |
| BseGI | GGATG | 2 cut(s) | 466, 942 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BseMI | GCAATG | 4 cut(s) | 105, 404, 534, 834 |
| BseNI | ACTGG | 1 cut(s) | 917 |
| BseXI | GCAGC | 4 cut(s) | 303, 383, 577, 605 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 824 |
| BshFI | GGCC | 5 cut(s) | 11, 192, 798, 1015, 1040 |
| BsiSI | CCGG | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BsmI | GAATGC | 1 cut(s) | 659 |
| BsnI | GGCC | 5 cut(s) | 11, 192, 798, 1015, 1040 |
| Bsp1286I | GDGCHC | 1 cut(s) | 568 |
| Bsp143I | GATC | 3 cut(s) | 21, 262, 436 |
| BspACI | CCGC | 3 cut(s) | 342, 345, 824 |
| BspANI | GGCC | 5 cut(s) | 11, 192, 798, 1015, 1040 |
| BspFNI | CGCG | 1 cut(s) | 824 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 2 cut(s) | 23, 606 |
| BspMAI | CTGCAG | 1 cut(s) | 595 |
| BspPI | GGATC | 2 cut(s) | 16, 29 |
| BspTI | CTTAAG | 1 cut(s) | 646 |
| BsrDI | GCAATG | 4 cut(s) | 105, 404, 534, 834 |
| BsrI | ACTGG | 1 cut(s) | 917 |
| BssECI | CCNNGG | 1 cut(s) | 489 |
| BssMI | GATC | 3 cut(s) | 21, 262, 436 |
| BssT1I | CCWWGG | 1 cut(s) | 489 |
| Bst2UI | CCWGG | 1 cut(s) | 609 |
| Bst4CI | ACNGT | 2 cut(s) | 556, 604 |
| BstAFI | CTTAAG | 1 cut(s) | 646 |
| BstBAI | YACGTR | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 2 cut(s) | 906, 985 |
| BstF5I | GGATG | 2 cut(s) | 466, 942 |
| BstFNI | CGCG | 1 cut(s) | 824 |
| BstKTI | GATC | 3 cut(s) | 24, 265, 439 |
| BstMBI | GATC | 3 cut(s) | 21, 262, 436 |
| BstNI | CCWGG | 1 cut(s) | 609 |
| BstNSI | RCATGY | 3 cut(s) | 128, 316, 323 |
| BstSCI | CCNGG | 1 cut(s) | 607 |
| BstSFI | CTRYAG | 2 cut(s) | 432, 591 |
| BstUI | CGCG | 1 cut(s) | 824 |
| BstV1I | GCAGC | 4 cut(s) | 303, 383, 577, 605 |
| BstV2I | GAAGAC | 2 cut(s) | 626, 1029 |
| BstX2I | RGATCY | 1 cut(s) | 21 |
| BstYI | RGATCY | 1 cut(s) | 21 |
| BsuRI | GGCC | 5 cut(s) | 11, 192, 798, 1015, 1040 |
| BtgZI | GCGATG | 1 cut(s) | 805 |
| BtsCI | GGATG | 2 cut(s) | 466, 942 |
| Cac8I | GCNNGC | 2 cut(s) | 906, 985 |
| CciI | TCATGA | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 462, 497 |
| CviAII | CATG | 8 cut(s) | 14, 125, 170, 313, 320, 440, 583, 869 |
| DpnI | GATC | 3 cut(s) | 23, 264, 438 |
| DpnII | GATC | 3 cut(s) | 21, 262, 436 |
| DraIII | CACNNNGTG | 1 cut(s) | 476 |
| EciI | GGCGGA | 1 cut(s) | 331 |
| Eco130I | CCWWGG | 1 cut(s) | 489 |
| Eco147I | AGGCCT | 1 cut(s) | 798 |
| Eco24I | GRGCYC | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 2 cut(s) | 696, 831 |
| Eco72I | CACGTG | 1 cut(s) | 476 |
| EcoRII | CCWGG | 1 cut(s) | 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 568 |
| ErhI | CCWWGG | 1 cut(s) | 489 |
| FaeI | CATG | 8 cut(s) | 17, 128, 173, 316, 323, 443, 586, 872 |
| FatI | CATG | 8 cut(s) | 13, 124, 169, 312, 319, 439, 582, 868 |
| FauNDI | CATATG | 2 cut(s) | 42, 932 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 6 cut(s) | 317, 345, 372, 591, 594, 825 |
| FokI | GGATG | 2 cut(s) | 473, 949 |
| FriOI | GRGCYC | 1 cut(s) | 568 |
| Fsp4HI | GCNGC | 6 cut(s) | 317, 345, 372, 591, 594, 825 |
| FspBI | CTAG | 3 cut(s) | 107, 257, 288 |
| GluI | GCNGC | 6 cut(s) | 317, 345, 372, 591, 594, 825 |
| HaeIII | GGCC | 5 cut(s) | 11, 192, 798, 1015, 1040 |
| HapII | CCGG | 1 cut(s) | 193 |
| Hin1II | CATG | 8 cut(s) | 17, 128, 173, 316, 323, 443, 586, 872 |
| HincII | GTYRAC | 1 cut(s) | 227 |
| HindII | GTYRAC | 1 cut(s) | 227 |
| HinfI | GANTC | 1 cut(s) | 732 |
| HpaII | CCGG | 1 cut(s) | 193 |
| HphI | GGTGA | 3 cut(s) | 169, 520, 530 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 486 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 682 |
| Hpy188III | TCNNGA | 2 cut(s) | 440, 956 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 486 |
| HpyAV | CCTTC | 2 cut(s) | 809, 962 |
| HpyCH4III | ACNGT | 2 cut(s) | 556, 604 |
| HpyCH4IV | ACGT | 3 cut(s) | 418, 475, 745 |
| HpySE526I | ACGT | 3 cut(s) | 418, 475, 745 |
| Hsp92II | CATG | 8 cut(s) | 17, 128, 173, 316, 323, 443, 586, 872 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 3 cut(s) | 21, 262, 436 |
| LmnI | GCTCC | 1 cut(s) | 980 |
| LpnPI | CCDG | 8 cut(s) | 206, 444, 594, 615, 621, 930, 969, 982 |
| Lsp1109I | GCAGC | 4 cut(s) | 303, 383, 577, 605 |
| LweI | GCATC | 2 cut(s) | 927, 932 |
| MaeI | CTAG | 3 cut(s) | 107, 257, 288 |
| MaeII | ACGT | 3 cut(s) | 418, 475, 745 |
| MaeIII | GTNAC | 4 cut(s) | 52, 283, 494, 574 |
| MalI | GATC | 3 cut(s) | 23, 264, 438 |
| MboI | GATC | 3 cut(s) | 21, 262, 436 |
| MboII | GAAGA | 4 cut(s) | 626, 693, 837, 1034 |
| MflI | RGATCY | 1 cut(s) | 21 |
| MhlI | GDGCHC | 1 cut(s) | 568 |
| MluCI | AATT | 7 cut(s) | 5, 29, 77, 157, 206, 479, 941 |
| MnlI | CCTC | 9 cut(s) | 48, 349, 359, 403, 508, 648, 746, 776, 959 |
| MseI | TTAA | 3 cut(s) | 354, 647, 1048 |
| MslI | CAYNNNNRTG | 2 cut(s) | 45, 935 |
| MspCI | CTTAAG | 1 cut(s) | 646 |
| MspI | CCGG | 1 cut(s) | 193 |
| MspR9I | CCNGG | 1 cut(s) | 609 |
| Mva1269I | GAATGC | 1 cut(s) | 659 |
| MvaI | CCWGG | 1 cut(s) | 609 |
| MvnI | CGCG | 1 cut(s) | 824 |
| NdeI | CATATG | 2 cut(s) | 42, 932 |
| NdeII | GATC | 3 cut(s) | 21, 262, 436 |
| NlaIII | CATG | 8 cut(s) | 17, 128, 173, 316, 323, 443, 586, 872 |
| NlaIV | GGNNCC | 2 cut(s) | 23, 606 |
| NmeAIII | GCCGAG | 1 cut(s) | 1016 |
| NmuCI | GTSAC | 2 cut(s) | 52, 494 |
| NspI | RCATGY | 3 cut(s) | 128, 316, 323 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PceI | AGGCCT | 1 cut(s) | 798 |
| PctI | GAATGC | 1 cut(s) | 659 |
| PfeI | GAWTC | 1 cut(s) | 732 |
| PkrI | GCNGC | 6 cut(s) | 318, 346, 373, 592, 595, 826 |
| PmaCI | CACGTG | 1 cut(s) | 476 |
| PmlI | CACGTG | 1 cut(s) | 476 |
| Ppu21I | YACGTR | 1 cut(s) | 476 |
| PshBI | ATTAAT | 1 cut(s) | 354 |
| PsiI | TTATAA | 1 cut(s) | 162 |
| Psp1406I | AACGTT | 1 cut(s) | 418 |
| Psp6I | CCWGG | 1 cut(s) | 607 |
| PspCI | CACGTG | 1 cut(s) | 476 |
| PspGI | CCWGG | 1 cut(s) | 607 |
| PspN4I | GGNNCC | 2 cut(s) | 23, 606 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PstI | CTGCAG | 1 cut(s) | 595 |
| PsuI | RGATCY | 1 cut(s) | 21 |
| RseI | CAYNNNNRTG | 2 cut(s) | 45, 935 |
| SaqAI | TTAA | 3 cut(s) | 354, 647, 1048 |
| SatI | GCNGC | 6 cut(s) | 317, 345, 372, 591, 594, 825 |
| Sau3AI | GATC | 3 cut(s) | 21, 262, 436 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| ScrFI | CCNGG | 1 cut(s) | 609 |
| SduI | GDGCHC | 1 cut(s) | 568 |
| SfaNI | GCATC | 2 cut(s) | 927, 932 |
| SfcI | CTRYAG | 2 cut(s) | 432, 591 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 45, 935 |
| SmlI | CTYRAG | 2 cut(s) | 646, 956 |
| SmoI | CTYRAG | 2 cut(s) | 646, 956 |
| Sse9I | AATT | 7 cut(s) | 5, 29, 77, 157, 206, 479, 941 |
| SseBI | AGGCCT | 1 cut(s) | 798 |
| SsiI | CCGC | 3 cut(s) | 342, 345, 824 |
| SspMI | CTAG | 3 cut(s) | 107, 257, 288 |
| StuI | AGGCCT | 1 cut(s) | 798 |
| StyD4I | CCNGG | 1 cut(s) | 607 |
| StyI | CCWWGG | 1 cut(s) | 489 |
| TaaI | ACNGT | 2 cut(s) | 556, 604 |
| TaiI | ACGT | 3 cut(s) | 421, 478, 748 |
| TaqI | TCGA | 2 cut(s) | 302, 364 |
| TasI | AATT | 7 cut(s) | 5, 29, 77, 157, 206, 479, 941 |
| TauI | GCSGC | 2 cut(s) | 347, 827 |
| TfiI | GAWTC | 1 cut(s) | 732 |
| Tru1I | TTAA | 3 cut(s) | 354, 647, 1048 |
| Tru9I | TTAA | 3 cut(s) | 354, 647, 1048 |
| TseFI | GTSAC | 2 cut(s) | 52, 494 |
| TseI | GCWGC | 4 cut(s) | 316, 371, 590, 593 |
| Tsp45I | GTSAC | 2 cut(s) | 52, 494 |
| TspDTI | ATGAA | 6 cut(s) | 17, 198, 456, 545, 857, 919 |
| TspGWI | ACGGA | 1 cut(s) | 473 |
| Vha464I | CTTAAG | 1 cut(s) | 646 |
| VspI | ATTAAT | 1 cut(s) | 354 |
| XapI | RAATTY | 1 cut(s) | 29 |
| XceI | RCATGY | 3 cut(s) | 128, 316, 323 |
| XspI | CTAG | 3 cut(s) | 107, 257, 288 |