ankyrin repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 42 | 4.6e-07 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 28 - 97 | 1e-08 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 178 - 263 | 2e-06 | Ankyrin repeats (3 copies) |
| PGG | PF13962 | 609 - 721 | 7e-26 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1751 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1130 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 353 |
| AccBSI | CCGCTC | 1 cut(s) | 901 |
| AccII | CGCG | 2 cut(s) | 480, 1777 |
| AccIII | TCCGGA | 1 cut(s) | 1025 |
| AclI | AACGTT | 1 cut(s) | 1176 |
| AclWI | GGATC | 4 cut(s) | 698, 711, 803, 1770 |
| AcoI | YGGCCR | 2 cut(s) | 15, 99 |
| AcsI | RAATTY | 3 cut(s) | 1316, 1627, 2034 |
| AfaI | GTAC | 5 cut(s) | 718, 860, 1168, 1299, 1855 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 146, 353, 1003, 1004, 2280 |
| AgsI | TTSAA | 7 cut(s) | 167, 295, 740, 779, 1042, 1502, 1745 |
| AjiI | CACGTC | 1 cut(s) | 871 |
| AjnI | CCWGG | 2 cut(s) | 269, 1909 |
| Alw21I | GWGCWC | 2 cut(s) | 1870, 1939 |
| Alw26I | GTCTC | 4 cut(s) | 1220, 1557, 1584, 1984 |
| Alw44I | GTGCAC | 1 cut(s) | 1935 |
| AlwI | GGATC | 4 cut(s) | 698, 711, 803, 1770 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 632, 1910 |
| Ama87I | CYCGRG | 1 cut(s) | 548 |
| Aor13HI | TCCGGA | 1 cut(s) | 1025 |
| AoxI | GGCC | 4 cut(s) | 15, 99, 156, 2098 |
| ApaLI | GTGCAC | 1 cut(s) | 1935 |
| ApeKI | GCWGC | 9 cut(s) | 5, 266, 626, 926, 1673, 1687, 1892, 1895, 2150 |
| ApoI | RAATTY | 3 cut(s) | 1316, 1627, 2034 |
| AseI | ATTAAT | 2 cut(s) | 671, 1808 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1630 |
| AspLEI | GCGC | 1 cut(s) | 1771 |
| AspS9I | GGNCC | 1 cut(s) | 2098 |
| AsuC2I | CCSGG | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 4 cut(s) | 161, 368, 911, 2029 |
| AvaI | CYCGRG | 1 cut(s) | 548 |
| BaeGI | GKGCMC | 1 cut(s) | 1939 |
| BalI | TGGCCA | 1 cut(s) | 101 |
| BamHI | GGATCC | 1 cut(s) | 703 |
| BauI | CACGAG | 1 cut(s) | 1541 |
| BbsI | GAAGAC | 1 cut(s) | 690 |
| Bbv12I | GWGCWC | 2 cut(s) | 1870, 1939 |
| BbvI | GCAGC | 9 cut(s) | 17, 253, 638, 938, 1685, 1699, 1879, 1907, 2137 |
| BccI | CCATC | 4 cut(s) | 140, 347, 604, 2129 |
| BceAI | ACGGC | 1 cut(s) | 2 |
| BciT130I | CCWGG | 2 cut(s) | 271, 1911 |
| BcnI | CCSGG | 1 cut(s) | 245 |
| BcoDI | GTCTC | 4 cut(s) | 1220, 1557, 1584, 1984 |
| BfaI | CTAG | 3 cut(s) | 746, 2211, 2309 |
| BfmI | CTRYAG | 3 cut(s) | 362, 423, 1893 |
| BfoI | RGCGCY | 1 cut(s) | 1772 |
| BglII | AGATCT | 2 cut(s) | 329, 2262 |
| Bme1390I | CCNGG | 3 cut(s) | 245, 271, 1911 |
| BmeT110I | CYCGRG | 1 cut(s) | 548 |
| BmgBI | CACGTC | 1 cut(s) | 871 |
| BmgT120I | GGNCC | 1 cut(s) | 2098 |
| BmiI | GGNNCC | 3 cut(s) | 138, 484, 705 |
| BmrFI | CCNGG | 3 cut(s) | 245, 271, 1911 |
| BmrI | ACTGGG | 2 cut(s) | 18, 2189 |
| BmsI | GCATC | 7 cut(s) | 258, 313, 346, 428, 1975, 2193, 2229 |
| BmuI | ACTGGG | 2 cut(s) | 18, 2189 |
| BpiI | GAAGAC | 1 cut(s) | 690 |
| BpuEI | CTTGAG | 2 cut(s) | 927, 1754 |
| BpuMI | CCSGG | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 4 cut(s) | 102, 132, 244, 478 |
| BsaWI | WCCGGW | 1 cut(s) | 1025 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 467, 497 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 146, 353, 1003, 1004, 2280 |
| Bse1I | ACTGG | 8 cut(s) | 24, 389, 453, 705, 759, 988, 1233, 2195 |
| Bse3DI | GCAATG | 2 cut(s) | 837, 1324 |
| BseAI | TCCGGA | 1 cut(s) | 1025 |
| BseBI | CCWGG | 2 cut(s) | 271, 1911 |
| BseDI | CCNNGG | 4 cut(s) | 102, 132, 244, 478 |
| BseGI | GGATG | 5 cut(s) | 358, 443, 592, 599, 2244 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 146, 353, 1003, 1004, 2280 |
| BseMI | GCAATG | 2 cut(s) | 837, 1324 |
| BseMII | CTCAG | 6 cut(s) | 324, 624, 1044, 1416, 1736, 1995 |
| BseNI | ACTGG | 8 cut(s) | 24, 389, 453, 705, 759, 988, 1233, 2195 |
| BseRI | GAGGAG | 1 cut(s) | 1600 |
| BseSI | GKGCMC | 1 cut(s) | 1939 |
| BseXI | GCAGC | 9 cut(s) | 17, 253, 638, 938, 1685, 1699, 1879, 1907, 2137 |
| BsgI | GTGCAG | 1 cut(s) | 1692 |
| Bsh1236I | CGCG | 2 cut(s) | 480, 1777 |
| Bsh1285I | CGRYCG | 1 cut(s) | 414 |
| BshFI | GGCC | 4 cut(s) | 17, 101, 158, 2100 |
| BsiEI | CGRYCG | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1870, 1939 |
| BsiHKCI | CYCGRG | 1 cut(s) | 548 |
| BsiSI | CCGG | 2 cut(s) | 244, 1026 |
| BslFI | GGGAC | 2 cut(s) | 5, 328 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 146, 353, 1003, 1004, 2280 |
| BsmAI | GTCTC | 4 cut(s) | 1220, 1557, 1584, 1984 |
| BsmFI | GGGAC | 2 cut(s) | 5, 328 |
| BsmI | GAATGC | 1 cut(s) | 886 |
| BsnI | GGCC | 4 cut(s) | 17, 101, 158, 2100 |
| BsoBI | CYCGRG | 1 cut(s) | 548 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1870, 1939 |
| Bsp13I | TCCGGA | 1 cut(s) | 1025 |
| Bsp1407I | TGTACA | 1 cut(s) | 1853 |
| Bsp143I | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| Bsp19I | CCATGG | 1 cut(s) | 132 |
| BspANI | GGCC | 4 cut(s) | 17, 101, 158, 2100 |
| BspCNI | CTCAG | 6 cut(s) | 325, 625, 1045, 1417, 1735, 1994 |
| BspEI | TCCGGA | 1 cut(s) | 1025 |
| BspFNI | CGCG | 2 cut(s) | 480, 1777 |
| BspHI | TCATGA | 2 cut(s) | 771, 1312 |
| BspLI | GGNNCC | 3 cut(s) | 138, 484, 705 |
| BspMAI | CTGCAG | 1 cut(s) | 1897 |
| BspPI | GGATC | 4 cut(s) | 698, 711, 803, 1770 |
| BspQI | GCTCTTC | 1 cut(s) | 621 |
| BsrBI | CCGCTC | 1 cut(s) | 901 |
| BsrDI | GCAATG | 2 cut(s) | 837, 1324 |
| BsrGI | TGTACA | 1 cut(s) | 1853 |
| BsrI | ACTGG | 8 cut(s) | 24, 389, 453, 705, 759, 988, 1233, 2195 |
| BssECI | CCNNGG | 4 cut(s) | 102, 132, 244, 478 |
| BssMI | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| BssSI | CACGAG | 1 cut(s) | 1541 |
| BssT1I | CCWWGG | 2 cut(s) | 102, 132 |
| Bst2BI | CACGAG | 1 cut(s) | 1541 |
| Bst2UI | CCWGG | 2 cut(s) | 271, 1911 |
| Bst4CI | ACNGT | 5 cut(s) | 13, 763, 1127, 1858, 1906 |
| Bst6I | CTCTTC | 1 cut(s) | 621 |
| BstAUI | TGTACA | 1 cut(s) | 1853 |
| BstC8I | GCNNGC | 3 cut(s) | 99, 201, 300 |
| BstDEI | CTNAG | 9 cut(s) | 333, 587, 633, 797, 1053, 1425, 1722, 1981, 2332 |
| BstDSI | CCRYGG | 2 cut(s) | 132, 478 |
| BstEII | GGTNACC | 1 cut(s) | 1228 |
| BstF5I | GGATG | 5 cut(s) | 358, 443, 592, 599, 2244 |
| BstFNI | CGCG | 2 cut(s) | 480, 1777 |
| BstH2I | RGCGCY | 1 cut(s) | 1772 |
| BstHHI | GCGC | 1 cut(s) | 1771 |
| BstKTI | GATC | 7 cut(s) | 332, 414, 472, 706, 811, 1765, 2265 |
| BstMAI | GTCTC | 4 cut(s) | 1220, 1557, 1584, 1984 |
| BstMBI | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| BstMCI | CGRYCG | 1 cut(s) | 414 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 14, 200, 266, 923, 1738 |
| BstNI | CCWGG | 2 cut(s) | 271, 1911 |
| BstNSI | RCATGY | 3 cut(s) | 203, 1304, 1333 |
| BstPI | GGTNACC | 1 cut(s) | 1228 |
| BstSCI | CCNGG | 3 cut(s) | 243, 269, 1909 |
| BstSFI | CTRYAG | 3 cut(s) | 362, 423, 1893 |
| BstSLI | GKGCMC | 1 cut(s) | 1939 |
| BstUI | CGCG | 2 cut(s) | 480, 1777 |
| BstV1I | GCAGC | 9 cut(s) | 17, 253, 638, 938, 1685, 1699, 1879, 1907, 2137 |
| BstV2I | GAAGAC | 1 cut(s) | 690 |
| BstX2I | RGATCY | 3 cut(s) | 329, 703, 2262 |
| BstYI | RGATCY | 3 cut(s) | 329, 703, 2262 |
| BsuRI | GGCC | 4 cut(s) | 17, 101, 158, 2100 |
| BtgI | CCRYGG | 2 cut(s) | 132, 478 |
| BtgZI | GCGATG | 1 cut(s) | 2107 |
| BtrI | CACGTC | 1 cut(s) | 871 |
| BtsCI | GGATG | 5 cut(s) | 358, 443, 592, 599, 2244 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 752, 995 |
| Cac8I | GCNNGC | 3 cut(s) | 99, 201, 300 |
| CaiI | CAGNNNCTG | 2 cut(s) | 632, 1910 |
| CciI | TCATGA | 2 cut(s) | 771, 1312 |
| CfoI | GCGC | 1 cut(s) | 1771 |
| Cfr13I | GGNCC | 1 cut(s) | 2098 |
| Cfr42I | CCGCGG | 1 cut(s) | 481 |
| Csp6I | GTAC | 5 cut(s) | 717, 859, 1167, 1298, 1854 |
| CviQI | GTAC | 5 cut(s) | 717, 859, 1167, 1298, 1854 |
| DdeI | CTNAG | 9 cut(s) | 333, 587, 633, 797, 1053, 1425, 1722, 1981, 2332 |
| DpnI | GATC | 7 cut(s) | 331, 413, 471, 705, 810, 1764, 2264 |
| DpnII | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1130 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1130 |
| EaeI | YGGCCR | 2 cut(s) | 15, 99 |
| Eam1104I | CTCTTC | 1 cut(s) | 621 |
| EarI | CTCTTC | 1 cut(s) | 621 |
| EciI | GGCGGA | 3 cut(s) | 118, 1929, 2300 |
| Eco130I | CCWWGG | 2 cut(s) | 102, 132 |
| Eco32I | GATATC | 2 cut(s) | 229, 1162 |
| Eco88I | CYCGRG | 1 cut(s) | 548 |
| Eco91I | GGTNACC | 1 cut(s) | 1228 |
| EcoO65I | GGTNACC | 1 cut(s) | 1228 |
| EcoRI | GAATTC | 1 cut(s) | 2034 |
| EcoRII | CCWGG | 2 cut(s) | 269, 1909 |
| EcoRV | GATATC | 2 cut(s) | 229, 1162 |
| EcoT14I | CCWWGG | 2 cut(s) | 102, 132 |
| EcoT22I | ATGCAT | 1 cut(s) | 2186 |
| ErhI | CCWWGG | 2 cut(s) | 102, 132 |
| FaqI | GGGAC | 2 cut(s) | 5, 328 |
| FauI | CCCGC | 2 cut(s) | 212, 307 |
| FokI | GGATG | 5 cut(s) | 365, 450, 579, 586, 2251 |
| FspBI | CTAG | 3 cut(s) | 746, 2211, 2309 |
| GlaI | GCGC | 1 cut(s) | 1770 |
| HaeII | RGCGCY | 1 cut(s) | 1772 |
| HaeIII | GGCC | 4 cut(s) | 17, 101, 158, 2100 |
| HapII | CCGG | 2 cut(s) | 244, 1026 |
| HhaI | GCGC | 1 cut(s) | 1771 |
| Hin6I | GCGC | 1 cut(s) | 1769 |
| HinP1I | GCGC | 1 cut(s) | 1769 |
| HincII | GTYRAC | 1 cut(s) | 868 |
| HindII | GTYRAC | 1 cut(s) | 868 |
| HindIII | AAGCTT | 2 cut(s) | 168, 945 |
| HinfI | GANTC | 6 cut(s) | 125, 826, 963, 1095, 1269, 1736 |
| HpaII | CCGG | 2 cut(s) | 244, 1026 |
| HphI | GGTGA | 4 cut(s) | 161, 368, 911, 2029 |
| Hpy166II | GTNNAC | 3 cut(s) | 868, 1657, 1937 |
| Hpy188III | TCNNGA | 8 cut(s) | 409, 473, 772, 1026, 1313, 1523, 2236, 2309 |
| Hpy8I | GTNNAC | 3 cut(s) | 868, 1657, 1937 |
| HpyCH4III | ACNGT | 5 cut(s) | 13, 763, 1127, 1858, 1906 |
| HpyCH4IV | ACGT | 4 cut(s) | 870, 1176, 1285, 2047 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 14, 200, 266, 923, 1738 |
| HpyF3I | CTNAG | 9 cut(s) | 333, 587, 633, 797, 1053, 1425, 1722, 1981, 2332 |
| HpySE526I | ACGT | 4 cut(s) | 870, 1176, 1285, 2047 |
| HspAI | GCGC | 1 cut(s) | 1769 |
| Kpn2I | TCCGGA | 1 cut(s) | 1025 |
| KspI | CCGCGG | 1 cut(s) | 481 |
| Kzo9I | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| LguI | GCTCTTC | 1 cut(s) | 621 |
| LmnI | GCTCC | 1 cut(s) | 488 |
| Lsp1109I | GCAGC | 9 cut(s) | 17, 253, 638, 938, 1685, 1699, 1879, 1907, 2137 |
| LweI | GCATC | 7 cut(s) | 258, 313, 346, 428, 1975, 2193, 2229 |
| MaeI | CTAG | 3 cut(s) | 746, 2211, 2309 |
| MaeII | ACGT | 4 cut(s) | 870, 1176, 1285, 2047 |
| MaeIII | GTNAC | 7 cut(s) | 527, 792, 892, 1228, 1357, 1876, 2048 |
| MalI | GATC | 7 cut(s) | 331, 413, 471, 705, 810, 1764, 2264 |
| MbiI | CCGCTC | 1 cut(s) | 901 |
| MboI | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| MfeI | CAATTG | 1 cut(s) | 1682 |
| MflI | RGATCY | 3 cut(s) | 329, 703, 2262 |
| MhlI | GDGCHC | 2 cut(s) | 1870, 1939 |
| MlsI | TGGCCA | 1 cut(s) | 101 |
| MluNI | TGGCCA | 1 cut(s) | 101 |
| MlyI | GAGTC | 2 cut(s) | 1089, 1745 |
| MmeI | TCCRAC | 2 cut(s) | 627, 1603 |
| Mox20I | TGGCCA | 1 cut(s) | 101 |
| Mph1103I | ATGCAT | 1 cut(s) | 2186 |
| MroI | TCCGGA | 1 cut(s) | 1025 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1630 |
| MscI | TGGCCA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 2 cut(s) | 821, 1883 |
| Msp20I | TGGCCA | 1 cut(s) | 101 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 480 |
| MspI | CCGG | 2 cut(s) | 244, 1026 |
| MspR9I | CCNGG | 3 cut(s) | 245, 271, 1911 |
| MunI | CAATTG | 1 cut(s) | 1682 |
| Mva1269I | GAATGC | 1 cut(s) | 886 |
| MvaI | CCWGG | 2 cut(s) | 271, 1911 |
| MvnI | CGCG | 2 cut(s) | 480, 1777 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 14, 200, 266, 923, 1738 |
| NciI | CCSGG | 1 cut(s) | 245 |
| NcoI | CCATGG | 1 cut(s) | 132 |
| NdeII | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| NlaIV | GGNNCC | 3 cut(s) | 138, 484, 705 |
| NmuCI | GTSAC | 2 cut(s) | 892, 1876 |
| NsiI | ATGCAT | 1 cut(s) | 2186 |
| NspI | RCATGY | 3 cut(s) | 203, 1304, 1333 |
| PaeI | GCATGC | 1 cut(s) | 203 |
| PaeR7I | CTCGAG | 1 cut(s) | 548 |
| PagI | TCATGA | 2 cut(s) | 771, 1312 |
| PciSI | GCTCTTC | 1 cut(s) | 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1282 |
| PctI | GAATGC | 1 cut(s) | 886 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1630 |
| PfeI | GAWTC | 4 cut(s) | 125, 826, 963, 1269 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 353 |
| Ple19I | CGATCG | 1 cut(s) | 414 |
| PleI | GAGTC | 2 cut(s) | 1089, 1744 |
| PpsI | GAGTC | 2 cut(s) | 1089, 1744 |
| PshBI | ATTAAT | 2 cut(s) | 671, 1808 |
| PsiI | TTATAA | 1 cut(s) | 1751 |
| Psp1406I | AACGTT | 1 cut(s) | 1176 |
| Psp6I | CCWGG | 2 cut(s) | 269, 1909 |
| PspEI | GGTNACC | 1 cut(s) | 1228 |
| PspGI | CCWGG | 2 cut(s) | 269, 1909 |
| PspN4I | GGNNCC | 3 cut(s) | 138, 484, 705 |
| PspPI | GGNCC | 1 cut(s) | 2098 |
| PspXI | VCTCGAGB | 1 cut(s) | 548 |
| PstI | CTGCAG | 1 cut(s) | 1897 |
| PstNI | CAGNNNCTG | 2 cut(s) | 632, 1910 |
| PsuI | RGATCY | 3 cut(s) | 329, 703, 2262 |
| PvuI | CGATCG | 1 cut(s) | 414 |
| RsaI | GTAC | 5 cut(s) | 718, 860, 1168, 1299, 1855 |
| RsaNI | GTAC | 5 cut(s) | 717, 859, 1167, 1298, 1854 |
| RseI | CAYNNNNRTG | 2 cut(s) | 821, 1883 |
| SacII | CCGCGG | 1 cut(s) | 481 |
| SapI | GCTCTTC | 1 cut(s) | 621 |
| Sau3AI | GATC | 7 cut(s) | 329, 411, 469, 703, 808, 1762, 2262 |
| Sau96I | GGNCC | 1 cut(s) | 2098 |
| SchI | GAGTC | 2 cut(s) | 1089, 1745 |
| ScrFI | CCNGG | 3 cut(s) | 245, 271, 1911 |
| SduI | GDGCHC | 2 cut(s) | 1870, 1939 |
| SfaNI | GCATC | 7 cut(s) | 258, 313, 346, 428, 1975, 2193, 2229 |
| SfcI | CTRYAG | 3 cut(s) | 362, 423, 1893 |
| Sfr274I | CTCGAG | 1 cut(s) | 548 |
| Sfr303I | CCGCGG | 1 cut(s) | 481 |
| SgrBI | CCGCGG | 1 cut(s) | 481 |
| SlaI | CTCGAG | 1 cut(s) | 548 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 821, 1883 |
| SmlI | CTYRAG | 3 cut(s) | 548, 942, 1733 |
| SmoI | CTYRAG | 3 cut(s) | 548, 942, 1733 |
| SphI | GCATGC | 1 cut(s) | 203 |
| SspI | AATATT | 1 cut(s) | 515 |
| SspMI | CTAG | 3 cut(s) | 746, 2211, 2309 |
| StyD4I | CCNGG | 3 cut(s) | 243, 269, 1909 |
| StyI | CCWWGG | 2 cut(s) | 102, 132 |
| TaaI | ACNGT | 5 cut(s) | 13, 763, 1127, 1858, 1906 |
| TaiI | ACGT | 4 cut(s) | 873, 1179, 1288, 2050 |
| TaqI | TCGA | 8 cut(s) | 123, 252, 410, 414, 549, 903, 966, 1829 |
| TaqII | GACCGA | 1 cut(s) | 1377 |
| TatI | WGTACW | 1 cut(s) | 1853 |
| TauI | GCSGC | 4 cut(s) | 483, 1511, 1774, 1777 |
| TfiI | GAWTC | 4 cut(s) | 125, 826, 963, 1269 |
| TscAI | CASTG | 3 cut(s) | 31, 759, 995 |
| TseFI | GTSAC | 2 cut(s) | 892, 1876 |
| TseI | GCWGC | 9 cut(s) | 5, 266, 626, 926, 1673, 1687, 1892, 1895, 2150 |
| Tsp45I | GTSAC | 2 cut(s) | 892, 1876 |
| TspGWI | ACGGA | 1 cut(s) | 1775 |
| TspRI | CASTG | 3 cut(s) | 31, 759, 995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 353 |
| VneI | GTGCAC | 1 cut(s) | 1935 |
| VspI | ATTAAT | 2 cut(s) | 671, 1808 |
| XapI | RAATTY | 3 cut(s) | 1316, 1627, 2034 |
| XbaI | TCTAGA | 1 cut(s) | 2308 |
| XceI | RCATGY | 3 cut(s) | 203, 1304, 1333 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2092 |
| XhoI | CTCGAG | 1 cut(s) | 548 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1630 |
| XspI | CTAG | 3 cut(s) | 746, 2211, 2309 |
| Zsp2I | ATGCAT | 1 cut(s) | 2186 |