VQ motif
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccI | GTMKAC | 1 cut(s) | 469 |
| AccII | CGCG | 1 cut(s) | 720 |
| AciI | CCGC | 3 cut(s) | 78, 604, 718 |
| AclWI | GGATC | 3 cut(s) | 464, 482, 990 |
| AcoI | YGGCCR | 1 cut(s) | 858 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcuI | CTGAAG | 2 cut(s) | 114, 406 |
| AcyI | GRCGYC | 1 cut(s) | 950 |
| AfaI | GTAC | 2 cut(s) | 135, 1042 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 819, 837 |
| AgsI | TTSAA | 4 cut(s) | 119, 522, 743, 925 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 892 |
| AjnI | CCWGG | 1 cut(s) | 260 |
| AleI | CACNNNNGTG | 1 cut(s) | 594 |
| AluBI | AGCT | 1 cut(s) | 746 |
| AluI | AGCT | 1 cut(s) | 746 |
| Alw21I | GWGCWC | 1 cut(s) | 1037 |
| Alw26I | GTCTC | 3 cut(s) | 251, 331, 1026 |
| AlwI | GGATC | 3 cut(s) | 464, 482, 990 |
| AoxI | GGCC | 3 cut(s) | 263, 271, 858 |
| ApeKI | GCWGC | 3 cut(s) | 83, 731, 847 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 920, 952 |
| AseI | ATTAAT | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 722 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AsuC2I | CCSGG | 3 cut(s) | 857, 911, 1063 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 689, 722, 925 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| BanII | GRGCYC | 2 cut(s) | 911, 1062 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 992, 1024 |
| BauI | CACGAG | 1 cut(s) | 637 |
| BbsI | GAAGAC | 2 cut(s) | 720, 1104 |
| Bbv12I | GWGCWC | 1 cut(s) | 1037 |
| BbvI | GCAGC | 3 cut(s) | 95, 743, 834 |
| BccI | CCATC | 5 cut(s) | 195, 263, 500, 536, 708 |
| BceAI | ACGGC | 1 cut(s) | 943 |
| BciT130I | CCWGG | 1 cut(s) | 262 |
| BclI | TGATCA | 2 cut(s) | 535, 787 |
| BcnI | CCSGG | 3 cut(s) | 857, 911, 1063 |
| BcoDI | GTCTC | 3 cut(s) | 251, 331, 1026 |
| BfaI | CTAG | 2 cut(s) | 363, 563 |
| BglII | AGATCT | 2 cut(s) | 13, 864 |
| BisI | GCNGC | 3 cut(s) | 84, 732, 848 |
| BlpI | GCTNAGC | 1 cut(s) | 905 |
| BlsI | GCNGC | 3 cut(s) | 85, 733, 849 |
| BmcAI | AGTACT | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 4 cut(s) | 262, 857, 911, 1063 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 892 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmiI | GGNNCC | 3 cut(s) | 61, 762, 824 |
| BmrFI | CCNGG | 4 cut(s) | 262, 857, 911, 1063 |
| BmsI | GCATC | 3 cut(s) | 98, 425, 790 |
| BpiI | GAAGAC | 2 cut(s) | 720, 1104 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 905 |
| BpuEI | CTTGAG | 1 cut(s) | 756 |
| BpuMI | CCSGG | 3 cut(s) | 857, 911, 1063 |
| BsaHI | GRCGYC | 1 cut(s) | 950 |
| BsaI | GGTCTC | 1 cut(s) | 251 |
| BsaJI | CCNNGG | 1 cut(s) | 1061 |
| BsaWI | WCCGGW | 3 cut(s) | 707, 819, 1081 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 654, 684, 689, 719, 1027, 1057 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 819, 837 |
| Bse1I | ACTGG | 4 cut(s) | 173, 213, 612, 1038 |
| BseBI | CCWGG | 1 cut(s) | 262 |
| BseDI | CCNNGG | 1 cut(s) | 1061 |
| BseGI | GGATG | 3 cut(s) | 416, 492, 700 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 819, 837 |
| BseMII | CTCAG | 3 cut(s) | 326, 633, 896 |
| BseNI | ACTGG | 4 cut(s) | 173, 213, 612, 1038 |
| BseRI | GAGGAG | 4 cut(s) | 147, 770, 773, 992 |
| BseX3I | CGGCCG | 1 cut(s) | 858 |
| BseXI | GCAGC | 3 cut(s) | 95, 743, 834 |
| Bsh1236I | CGCG | 1 cut(s) | 720 |
| Bsh1285I | CGRYCG | 1 cut(s) | 861 |
| BshFI | GGCC | 3 cut(s) | 265, 273, 860 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsiEI | CGRYCG | 1 cut(s) | 861 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1037 |
| BsiSI | CCGG | 6 cut(s) | 708, 820, 857, 911, 1063, 1082 |
| BslFI | GGGAC | 2 cut(s) | 341, 659 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 819, 837 |
| BsmAI | GTCTC | 3 cut(s) | 251, 331, 1026 |
| BsmBI | CGTCTC | 2 cut(s) | 331, 1026 |
| BsmFI | GGGAC | 2 cut(s) | 341, 659 |
| BsmI | GAATGC | 1 cut(s) | 409 |
| BsnI | GGCC | 3 cut(s) | 265, 273, 860 |
| Bso31I | GGTCTC | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 3 cut(s) | 911, 1037, 1062 |
| Bsp143I | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 905 |
| BspACI | CCGC | 3 cut(s) | 78, 604, 718 |
| BspANI | GGCC | 3 cut(s) | 265, 273, 860 |
| BspCNI | CTCAG | 3 cut(s) | 327, 632, 897 |
| BspFNI | CGCG | 1 cut(s) | 720 |
| BspHI | TCATGA | 1 cut(s) | 499 |
| BspLI | GGNNCC | 3 cut(s) | 61, 762, 824 |
| BspPI | GGATC | 3 cut(s) | 464, 482, 990 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BspTNI | GGTCTC | 1 cut(s) | 251 |
| BsrI | ACTGG | 4 cut(s) | 173, 213, 612, 1038 |
| BssECI | CCNNGG | 1 cut(s) | 1061 |
| BssMI | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| BssNAI | GTATAC | 1 cut(s) | 470 |
| BssNI | GRCGYC | 1 cut(s) | 950 |
| BssSI | CACGAG | 1 cut(s) | 637 |
| Bst1107I | GTATAC | 1 cut(s) | 470 |
| Bst2BI | CACGAG | 1 cut(s) | 637 |
| Bst2UI | CCWGG | 1 cut(s) | 262 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 293, 467, 682 |
| Bst6I | CTCTTC | 1 cut(s) | 838 |
| BstACI | GRCGYC | 1 cut(s) | 950 |
| BstC8I | GCNNGC | 2 cut(s) | 214, 579 |
| BstDEI | CTNAG | 3 cut(s) | 335, 619, 905 |
| BstEII | GGTNACC | 1 cut(s) | 913 |
| BstF5I | GGATG | 3 cut(s) | 416, 492, 700 |
| BstFNI | CGCG | 1 cut(s) | 720 |
| BstHHI | GCGC | 1 cut(s) | 722 |
| BstKTI | GATC | 7 cut(s) | 16, 459, 490, 538, 790, 867, 985 |
| BstMAI | GTCTC | 3 cut(s) | 251, 331, 1026 |
| BstMBI | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| BstMCI | CGRYCG | 1 cut(s) | 861 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 728, 809, 880 |
| BstNI | CCWGG | 1 cut(s) | 262 |
| BstPI | GGTNACC | 1 cut(s) | 913 |
| BstSCI | CCNGG | 4 cut(s) | 260, 855, 909, 1061 |
| BstUI | CGCG | 1 cut(s) | 720 |
| BstV1I | GCAGC | 3 cut(s) | 95, 743, 834 |
| BstV2I | GAAGAC | 2 cut(s) | 720, 1104 |
| BstX2I | RGATCY | 3 cut(s) | 13, 456, 864 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 593 |
| BstYI | RGATCY | 3 cut(s) | 13, 456, 864 |
| BstZ17I | GTATAC | 1 cut(s) | 470 |
| BstZI | CGGCCG | 1 cut(s) | 858 |
| BsuRI | GGCC | 3 cut(s) | 265, 273, 860 |
| BtsCI | GGATG | 3 cut(s) | 416, 492, 700 |
| BtsIMutI | CAGTG | 2 cut(s) | 430, 678 |
| Cac8I | GCNNGC | 2 cut(s) | 214, 579 |
| CciI | TCATGA | 1 cut(s) | 499 |
| CfoI | GCGC | 1 cut(s) | 722 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CseI | GACGC | 2 cut(s) | 910, 939 |
| Csp6I | GTAC | 2 cut(s) | 134, 1041 |
| CviAII | CATG | 3 cut(s) | 239, 500, 527 |
| CviQI | GTAC | 2 cut(s) | 134, 1041 |
| DdeI | CTNAG | 3 cut(s) | 335, 619, 905 |
| DpnI | GATC | 7 cut(s) | 15, 458, 489, 537, 789, 866, 984 |
| DpnII | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| DriI | GACNNNNNGTC | 1 cut(s) | 892 |
| EaeI | YGGCCR | 1 cut(s) | 858 |
| EagI | CGGCCG | 1 cut(s) | 858 |
| Eam1104I | CTCTTC | 1 cut(s) | 838 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 892 |
| EarI | CTCTTC | 1 cut(s) | 838 |
| EciI | GGCGGA | 2 cut(s) | 93, 619 |
| EclXI | CGGCCG | 1 cut(s) | 858 |
| Eco147I | AGGCCT | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 2 cut(s) | 911, 1062 |
| Eco31I | GGTCTC | 1 cut(s) | 251 |
| Eco32I | GATATC | 1 cut(s) | 507 |
| Eco52I | CGGCCG | 1 cut(s) | 858 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 406 |
| Eco91I | GGTNACC | 1 cut(s) | 913 |
| EcoO65I | GGTNACC | 1 cut(s) | 913 |
| EcoRII | CCWGG | 1 cut(s) | 260 |
| EcoRV | GATATC | 1 cut(s) | 507 |
| EcoT22I | ATGCAT | 1 cut(s) | 113 |
| EcoT38I | GRGCYC | 2 cut(s) | 911, 1062 |
| Esp3I | CGTCTC | 2 cut(s) | 331, 1026 |
| FaeI | CATG | 3 cut(s) | 242, 503, 530 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 561, 593 |
| FaqI | GGGAC | 2 cut(s) | 341, 659 |
| FatI | CATG | 3 cut(s) | 238, 499, 526 |
| FbaI | TGATCA | 2 cut(s) | 535, 787 |
| FblI | GTMKAC | 1 cut(s) | 469 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 732, 848 |
| FokI | GGATG | 3 cut(s) | 403, 479, 687 |
| FriOI | GRGCYC | 2 cut(s) | 911, 1062 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 732, 848 |
| FspBI | CTAG | 2 cut(s) | 363, 563 |
| GlaI | GCGC | 1 cut(s) | 721 |
| GluI | GCNGC | 3 cut(s) | 84, 732, 848 |
| HaeIII | GGCC | 3 cut(s) | 265, 273, 860 |
| HapII | CCGG | 6 cut(s) | 708, 820, 857, 911, 1063, 1082 |
| HgaI | GACGC | 2 cut(s) | 910, 939 |
| HhaI | GCGC | 1 cut(s) | 722 |
| Hin1I | GRCGYC | 1 cut(s) | 950 |
| Hin1II | CATG | 3 cut(s) | 242, 503, 530 |
| Hin6I | GCGC | 1 cut(s) | 720 |
| HinP1I | GCGC | 1 cut(s) | 720 |
| HinfI | GANTC | 2 cut(s) | 663, 877 |
| HpaII | CCGG | 6 cut(s) | 708, 820, 857, 911, 1063, 1082 |
| HphI | GGTGA | 4 cut(s) | 130, 689, 722, 925 |
| Hpy166II | GTNNAC | 2 cut(s) | 470, 653 |
| Hpy188I | TCNGA | 2 cut(s) | 976, 1026 |
| Hpy188III | TCNNGA | 5 cut(s) | 500, 539, 637, 773, 1116 |
| Hpy8I | GTNNAC | 2 cut(s) | 470, 653 |
| Hpy99I | CGWCG | 7 cut(s) | 377, 674, 898, 932, 955, 958, 976 |
| HpyAV | CCTTC | 3 cut(s) | 423, 430, 994 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 293, 467, 682 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyCH4V | TGCA | 7 cut(s) | 111, 323, 409, 416, 581, 599, 1015 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 728, 809, 880 |
| HpyF3I | CTNAG | 3 cut(s) | 335, 619, 905 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| Hsp92I | GRCGYC | 1 cut(s) | 950 |
| Hsp92II | CATG | 3 cut(s) | 242, 503, 530 |
| HspAI | GCGC | 1 cut(s) | 720 |
| Ksp22I | TGATCA | 2 cut(s) | 535, 787 |
| Kzo9I | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| LmnI | GCTCC | 3 cut(s) | 80, 760, 822 |
| Lsp1109I | GCAGC | 3 cut(s) | 95, 743, 834 |
| LweI | GCATC | 3 cut(s) | 98, 425, 790 |
| MaeI | CTAG | 2 cut(s) | 363, 563 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MaeIII | GTNAC | 5 cut(s) | 38, 229, 851, 913, 1084 |
| MalI | GATC | 7 cut(s) | 15, 458, 489, 537, 789, 866, 984 |
| MboI | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| MfeI | CAATTG | 1 cut(s) | 163 |
| MflI | RGATCY | 3 cut(s) | 13, 456, 864 |
| MhlI | GDGCHC | 3 cut(s) | 911, 1037, 1062 |
| MluCI | AATT | 3 cut(s) | 163, 279, 806 |
| MlyI | GAGTC | 2 cut(s) | 672, 886 |
| MmeI | TCCRAC | 2 cut(s) | 575, 954 |
| Mph1103I | ATGCAT | 1 cut(s) | 113 |
| MseI | TTAA | 3 cut(s) | 150, 297, 438 |
| MslI | CAYNNNNRTG | 3 cut(s) | 531, 591, 594 |
| MspI | CCGG | 6 cut(s) | 708, 820, 857, 911, 1063, 1082 |
| MspR9I | CCNGG | 4 cut(s) | 262, 857, 911, 1063 |
| MunI | CAATTG | 1 cut(s) | 163 |
| Mva1269I | GAATGC | 1 cut(s) | 409 |
| MvaI | CCWGG | 1 cut(s) | 262 |
| MvnI | CGCG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 728, 809, 880 |
| NciI | CCSGG | 3 cut(s) | 857, 911, 1063 |
| NdeII | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| NlaIII | CATG | 3 cut(s) | 242, 503, 530 |
| NlaIV | GGNNCC | 3 cut(s) | 61, 762, 824 |
| NmeAIII | GCCGAG | 4 cut(s) | 886, 900, 1021, 1119 |
| NmuCI | GTSAC | 3 cut(s) | 229, 913, 1084 |
| NsiI | ATGCAT | 1 cut(s) | 113 |
| OliI | CACNNNNGTG | 1 cut(s) | 594 |
| PagI | TCATGA | 1 cut(s) | 499 |
| PceI | AGGCCT | 1 cut(s) | 265 |
| PctI | GAATGC | 1 cut(s) | 409 |
| PkrI | GCNGC | 3 cut(s) | 85, 733, 849 |
| PleI | GAGTC | 2 cut(s) | 671, 885 |
| PpsI | GAGTC | 2 cut(s) | 671, 885 |
| PshBI | ATTAAT | 1 cut(s) | 150 |
| Psp6I | CCWGG | 1 cut(s) | 260 |
| PspEI | GGTNACC | 1 cut(s) | 913 |
| PspGI | CCWGG | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 3 cut(s) | 61, 762, 824 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PsuI | RGATCY | 3 cut(s) | 13, 456, 864 |
| RsaI | GTAC | 2 cut(s) | 135, 1042 |
| RsaNI | GTAC | 2 cut(s) | 134, 1041 |
| RseI | CAYNNNNRTG | 3 cut(s) | 531, 591, 594 |
| SaqAI | TTAA | 3 cut(s) | 150, 297, 438 |
| SatI | GCNGC | 3 cut(s) | 84, 732, 848 |
| Sau3AI | GATC | 7 cut(s) | 13, 456, 487, 535, 787, 864, 982 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| ScaI | AGTACT | 1 cut(s) | 1042 |
| SchI | GAGTC | 2 cut(s) | 672, 886 |
| ScrFI | CCNGG | 4 cut(s) | 262, 857, 911, 1063 |
| SduI | GDGCHC | 3 cut(s) | 911, 1037, 1062 |
| SetI | ASST | 7 cut(s) | 49, 343, 484, 564, 634, 748, 772 |
| SfaNI | GCATC | 3 cut(s) | 98, 425, 790 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 531, 591, 594 |
| SmlI | CTYRAG | 1 cut(s) | 771 |
| SmoI | CTYRAG | 1 cut(s) | 771 |
| Sse9I | AATT | 3 cut(s) | 163, 279, 806 |
| SseBI | AGGCCT | 1 cut(s) | 265 |
| SsiI | CCGC | 3 cut(s) | 78, 604, 718 |
| SspMI | CTAG | 2 cut(s) | 363, 563 |
| StuI | AGGCCT | 1 cut(s) | 265 |
| StyD4I | CCNGG | 4 cut(s) | 260, 855, 909, 1061 |
| TaaI | ACNGT | 4 cut(s) | 32, 293, 467, 682 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 3 cut(s) | 106, 180, 885 |
| TasI | AATT | 3 cut(s) | 163, 279, 806 |
| TatI | WGTACW | 2 cut(s) | 133, 1040 |
| Tru1I | TTAA | 3 cut(s) | 150, 297, 438 |
| Tru9I | TTAA | 3 cut(s) | 150, 297, 438 |
| TscAI | CASTG | 2 cut(s) | 430, 685 |
| TseFI | GTSAC | 3 cut(s) | 229, 913, 1084 |
| TseI | GCWGC | 3 cut(s) | 83, 731, 847 |
| Tsp45I | GTSAC | 3 cut(s) | 229, 913, 1084 |
| TspDTI | ATGAA | 2 cut(s) | 255, 543 |
| TspGWI | ACGGA | 4 cut(s) | 390, 485, 638, 882 |
| TspRI | CASTG | 2 cut(s) | 430, 685 |
| VspI | ATTAAT | 1 cut(s) | 150 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 833 |
| XmiI | GTMKAC | 1 cut(s) | 469 |
| XspI | CTAG | 2 cut(s) | 363, 563 |
| ZrmI | AGTACT | 1 cut(s) | 1042 |
| Zsp2I | ATGCAT | 1 cut(s) | 113 |