Rh2BG573500

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
78971593 .. 78982997
11405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG573500.1

Sequence Viewer

Length: 2397 bp
ATGGCTGCGCCAGTTGTCCCCAGTTTGATTGTCAACGAACTTCTTAACAAGCACAACTCCGAAGATTGGAGAGTTCGCGTCAAAACCTATTTAGTAGCTAAAGGTCTTTGGAGTACTGTTGTAGTTGAGGCCACTGAGCCTCGTCTTAAAGGCAAAGATAAACGTGAGGCTTGGAAAAAGACCAACGCAGAGGCTCTGCATGCAATTCATCTTTGTTGCGGAAATGATGCCTTTAAAGTTATCAGGGACGAAGAGTCAGCCCACAAAGCCTGGGAGGCCTTAAAATCTCACTACCCAGGCGGTCTTCAAAGCTGTGATGCTCAGCTAGAGGTAGAAAAAGCTGATGAGTCAGAGGAAGAAGTGGATCAAGGTGATGGAGATGGAGATAAGAACAGTTCCAACGATGATACAGACTATAAACCTTTCTTTCGTGCCGCGAAACATTGGAAGTGGAAGATTGTAATGGACTTTCTTAAAGACCACCCCGAGGCAATAAGAAAACCAGCTCCATCAGACGACGGCAAGACGGTTCTTCATTATGCAGTCGATGCTGTGCGGGAGGATATTGTTCGAAGGTTATTGCAGTATATTAATACAGATGATGATTTGGAAATAAGGGACGATCAATGGTGTAGCGCACTTGATTATTGTTATATAGTTCCTGAAAAAGATGGAACGGTCGAAATAGCTAAATGTTTGCTTGACAAGAAAAAGGAGCTACTTGCAGGTGATGTCGATCCCCGAGTGATCCGCGACTTACTTGTCGGAGCTTATATTCACGGCAGATCAAAACTGGCTGACTATCTCTATAAGGTCACTCCCCTCAAAACTGACGATCCCCATGTCGCTCATCTTATTTCCCTCAGTTTTAGCACCAAGAGATTTGGTATTGCGTGCGATTTAATCCAGAAACACCCAAGCTTGGCCATTGCTAAAGACAACTCTGACAATTCCCCTTTGAACGAATTGGCATGTACACCTTCAGCATTCTTAAGTGGAAGCCAGCTCAAATTTTGGGAAAAATTGATTTATCATGTTATATCCATAAAACCTACTCCTCCCGTCAAGAGCGAGGAAGAACCTACTCTTACCATGGACAACAAAGGAAAACTTACACCTCCATTGCATGCAATTTCCATAGACGTTCCCACACAAGAAGATGGCAAAGGAAAACCCACTCCTACACCCCATGCAGTTCCCAAAGACTTTCCAACACATGAAGATGACAGAGATAAGCAGAGTGGTCTCATTCCCTCAGTTACAGCTCTATTTCAAGGACTAATAACGGAGAATATTTGCAAGTTTTTTGGGATACATCGTATCTATCGAATGAAATTGCACCATGTTCGCAGCCTTGAAATTCTAGTTTGCATGTGTAAAGTGCTGACGACAAAAAAGATGAAAAATTGTGACATAAAGCAAAAAGAATTCGTGGAAACAGCAATCTTCCAAGCAGCAGAACGAGGGCTTGTTGAGTTTCTTACTAATATATTTAGAGTAAACCCAGACTTGGCAACAATAAAAAATGAAAAAGGCCGAAACATATTTCAAGTAGCAGTCAAGTGTCGTCAAGCAAAAGTTTATAATCTTATACATGGGTTCAACAAAGACACCAGAAAAACTCTGATGGGTATGACAGATAATGATGACAACAATATGCTACATATGGTGGGACTTTTCTCACCATTTGCACAAACCAACTGCATACGTGGTGCGGCTTTGCAGATGCAAAAAGAACTACAATGGTTCAAGGAGTTGGAGAGCATGGCTAGCCCAGAGGATCTTGAAGCTGCAAACGATACGCATGCTATGAAACCGAGTGAGTTTTTCTCTAAGAACCATGAAGAATTGATCAAGGAGGCAGAAACGTCAATGAAAGAAACAGCTACCTCTTGTACAGTTGCATGTGCTCTCATTGTAACCATGATGTTTGCTGCAGCATTCACAGTTCCCGGTGGAAATAATGAAGACGATGGTATTCCCAAATTCTTGAATAAAAGGGCCTTTAGGGTTTTTATAGTTGCAGACGCTCTATCACTCTTTACTTCCACTACTTCAGTAATGTTCTTTCTAGGAGTTCTCACGTCACGTTATGCAGAAGAAGATTTTCTCATATCTTTGCCTCGAAAAATGATATTGGGTCTTCTGACACTTTTTCTCTCCGTGGCTGCCATGATGATCGCTTTTACCTCGGCCCTGTTTCTTATGCTTCCCACAGACTCATGGATTGCTTTTCCTACTTCTTTACTCACTGGTATTCCAATTGCCTCATTTATATGGATGCAATTTCCCTTTCTCGTGGAGATTTTTATTTCTACTTATATACCACGAACATTCCGCAAGAATGTGAATGAGAAATTAAACCTTGGAAGAGTTAGATTTAGAGATGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

798

Amino Acids

90.03

Weight (kDa)

6.32

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 28 - 99 3e-10 gag-polypeptide of LTR copia-type
PGG PF13962 624 - 735 4.6e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1584
AarI CACCTGC 1 cut(s) 716
AasI GACNNNNNNGTC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 716
AccII CGCG 3 cut(s) 78, 437, 753
AciI CCGC 7 cut(s) 219, 300, 435, 556, 751, 1715, 2338
AclWI GGATC 5 cut(s) 372, 731, 742, 830, 1788
AcoI YGGCCR 1 cut(s) 924
AcsI RAATTY 4 cut(s) 1010, 1359, 1427, 1985
AcuI CTGAAG 2 cut(s) 966, 2040
AfaI GTAC 3 cut(s) 115, 976, 1897
AfiI CCNNNNNNNGG 4 cut(s) 66, 487, 922, 1510
AflII CTTAAG 1 cut(s) 991
AgsI TTSAA 9 cut(s) 308, 961, 1274, 1358, 1550, 1603, 1750, 1787, 1993
AhdI GACNNNNNGTC 1 cut(s) 253
AjiI CACGTC 1 cut(s) 2085
AjnI CCWGG 2 cut(s) 269, 295
Alw21I GWGCWC 1 cut(s) 1912
Alw26I GTCTC 1 cut(s) 1250
AlwI GGATC 5 cut(s) 372, 731, 742, 830, 1788
Ama87I CYCGRG 2 cut(s) 485, 741
AoxI GGCC 6 cut(s) 129, 276, 924, 1534, 2001, 2193
ApeKI GCWGC 7 cut(s) 5, 1350, 1454, 1790, 1934, 1937, 2168
ApoI RAATTY 4 cut(s) 1010, 1359, 1427, 1985
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 2106
AspLEI GCGC 2 cut(s) 10, 638
AspS9I GGNCC 2 cut(s) 2001, 2194
AsuC2I CCSGG 1 cut(s) 1953
AsuHPI GGTGA 3 cut(s) 383, 740, 1674
AsuII TTCGAA 1 cut(s) 571
AsuNHI GCTAGC 1 cut(s) 1769
AvaI CYCGRG 2 cut(s) 485, 741
BalI TGGCCA 1 cut(s) 926
BauI CACGAG 1 cut(s) 2297
BbsI GAAGAC 3 cut(s) 296, 1974, 2135
Bbv12I GWGCWC 1 cut(s) 1912
BbvI GCAGC 6 cut(s) 1362, 1466, 1777, 1921, 1949, 2155
BccI CCATC 7 cut(s) 368, 374, 517, 665, 1154, 1621, 1967
BceAI ACGGC 2 cut(s) 535, 796
BcgI CGANNNNNNTGC 4 cut(s) 1328, 1362, 1787, 1821
BciT130I CCWGG 2 cut(s) 271, 297
BciVI GTATCC 1 cut(s) 1305
BclI TGATCA 1 cut(s) 1851
BcnI CCSGG 1 cut(s) 1953
BcoDI GTCTC 1 cut(s) 1250
BfaI CTAG 4 cut(s) 326, 1364, 1770, 2072
BfmI CTRYAG 1 cut(s) 1935
BfrI CTTAAG 1 cut(s) 991
BfuAI ACCTGC 1 cut(s) 716
BfuI GTATCC 1 cut(s) 1305
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 9 cut(s) 6, 435, 1351, 1455, 1716, 1791, 1935, 1938, 2169
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 9 cut(s) 7, 436, 1352, 1456, 1717, 1792, 1936, 1939, 2170
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 271, 297, 1953
BmeRI GACNNNNNGTC 1 cut(s) 253
BmeT110I CYCGRG 2 cut(s) 485, 741
BmgBI CACGTC 1 cut(s) 2085
BmgT120I GGNCC 2 cut(s) 2001, 2194
BmrFI CCNGG 3 cut(s) 271, 297, 1953
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 6 cut(s) 217, 307, 538, 1716, 2271, 2377
BmtI GCTAGC 1 cut(s) 1773
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 3 cut(s) 296, 1974, 2135
BplI GAGNNNNNCTC 2 cut(s) 1814, 1846
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 571
BpuMI CCSGG 1 cut(s) 1953
BsaAI YACGTR 1 cut(s) 1709
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 1250
BsaJI CCNNGG 7 cut(s) 270, 295, 486, 1092, 2163, 2190, 2365
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 487, 922, 1510
Bse1I ACTGG 4 cut(s) 11, 21, 798, 2257
Bse3DI GCAATG 2 cut(s) 927, 1121
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 2 cut(s) 271, 297
BseDI CCNNGG 7 cut(s) 270, 295, 486, 1092, 2163, 2190, 2365
BseGI GGATG 1 cut(s) 2286
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 4 cut(s) 66, 487, 922, 1510
BseMI GCAATG 2 cut(s) 927, 1121
BseMII CTCAG 4 cut(s) 126, 335, 877, 1269
BseNI ACTGG 4 cut(s) 11, 21, 798, 2257
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 6 cut(s) 1362, 1466, 1777, 1921, 1949, 2155
Bsh1236I CGCG 3 cut(s) 78, 437, 753
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 6 cut(s) 131, 278, 926, 1536, 2003, 2195
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 1912
BsiHKCI CYCGRG 2 cut(s) 485, 741
BsiSI CCGG 1 cut(s) 1953
BslFI GGGAC 4 cut(s) 2, 260, 632, 1686
BslI CCNNNNNNNGG 4 cut(s) 66, 487, 922, 1510
BsmAI GTCTC 1 cut(s) 1250
BsmFI GGGAC 4 cut(s) 2, 260, 632, 1686
BsmI GAATGC 2 cut(s) 986, 1940
BsnI GGCC 6 cut(s) 131, 278, 926, 1536, 2003, 2195
Bso31I GGTCTC 1 cut(s) 1250
BsoBI CYCGRG 2 cut(s) 485, 741
Bsp119I TTCGAA 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 1912
Bsp1407I TGTACA 2 cut(s) 974, 1895
Bsp143I GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 7 cut(s) 219, 300, 435, 556, 751, 1715, 2338
BspANI GGCC 6 cut(s) 131, 278, 926, 1536, 2003, 2195
BspCNI CTCAG 4 cut(s) 127, 334, 876, 1268
BspFNI CGCG 3 cut(s) 78, 437, 753
BspMAI CTGCAG 1 cut(s) 1939
BspMI ACCTGC 1 cut(s) 716
BspOI GCTAGC 1 cut(s) 1773
BspPI GGATC 5 cut(s) 372, 731, 742, 830, 1788
BspT104I TTCGAA 1 cut(s) 571
BspTI CTTAAG 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 1250
BsrDI GCAATG 2 cut(s) 927, 1121
BsrGI TGTACA 2 cut(s) 974, 1895
BsrI ACTGG 4 cut(s) 11, 21, 798, 2257
BssECI CCNNGG 7 cut(s) 270, 295, 486, 1092, 2163, 2190, 2365
BssMI GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
BssSI CACGAG 1 cut(s) 2297
BssT1I CCWWGG 2 cut(s) 1092, 2365
Bst2BI CACGAG 1 cut(s) 2297
Bst2UI CCWGG 2 cut(s) 271, 297
Bst4CI ACNGT 6 cut(s) 118, 395, 529, 679, 1900, 1948
Bst6I CTCTTC 2 cut(s) 246, 2365
BstAFI CTTAAG 1 cut(s) 991
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 2 cut(s) 974, 1895
BstBAI YACGTR 1 cut(s) 1709
BstBI TTCGAA 1 cut(s) 571
BstC8I GCNNGC 6 cut(s) 201, 895, 1004, 1128, 1771, 1806
BstDEI CTNAG 5 cut(s) 135, 321, 863, 1255, 1833
BstDSI CCRYGG 2 cut(s) 1092, 2163
BstF5I GGATG 1 cut(s) 2286
BstFNI CGCG 3 cut(s) 78, 437, 753
BstHHI GCGC 2 cut(s) 10, 638
BstKTI GATC 9 cut(s) 367, 625, 739, 750, 788, 838, 1783, 1854, 2181
BstMAI GTCTC 1 cut(s) 1250
BstMBI GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 5 cut(s) 200, 266, 275, 548, 1770
BstNI CCWGG 2 cut(s) 271, 297
BstNSI RCATGY 6 cut(s) 203, 975, 1130, 1375, 1808, 1908
BstSCI CCNGG 3 cut(s) 269, 295, 1951
BstSFI CTRYAG 1 cut(s) 1935
BstUI CGCG 3 cut(s) 78, 437, 753
BstV1I GCAGC 6 cut(s) 1362, 1466, 1777, 1921, 1949, 2155
BstV2I GAAGAC 3 cut(s) 296, 1974, 2135
BstX2I RGATCY 1 cut(s) 1780
BstYI RGATCY 1 cut(s) 1780
BsuI GTATCC 1 cut(s) 1305
BsuRI GGCC 6 cut(s) 131, 278, 926, 1536, 2003, 2195
BtgI CCRYGG 2 cut(s) 1092, 2163
BtrI CACGTC 1 cut(s) 2085
BtsCI GGATG 1 cut(s) 2286
BtsIMutI CAGTG 2 cut(s) 132, 2250
BveI ACCTGC 1 cut(s) 716
Cac8I GCNNGC 6 cut(s) 201, 895, 1004, 1128, 1771, 1806
CfoI GCGC 2 cut(s) 10, 638
Cfr13I GGNCC 2 cut(s) 2001, 2194
CseI GACGC 2 cut(s) 67, 2036
Csp6I GTAC 3 cut(s) 114, 975, 1896
CviQI GTAC 3 cut(s) 114, 975, 1896
DdeI CTNAG 5 cut(s) 135, 321, 863, 1255, 1833
DpnI GATC 9 cut(s) 366, 624, 738, 749, 787, 837, 1782, 1853, 2180
DpnII GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
DraI TTTAAA 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 761
DriI GACNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 761
EaeI YGGCCR 1 cut(s) 924
Eam1104I CTCTTC 2 cut(s) 246, 2365
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 2 cut(s) 246, 2365
Eco130I CCWWGG 2 cut(s) 1092, 2365
Eco147I AGGCCT 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 1250
Eco57I CTGAAG 2 cut(s) 966, 2040
Eco88I CYCGRG 2 cut(s) 485, 741
EcoO109I RGGNCCY 1 cut(s) 2001
EcoRI GAATTC 1 cut(s) 1427
EcoRII CCWGG 2 cut(s) 269, 295
EcoT14I CCWWGG 2 cut(s) 1092, 2365
ErhI CCWWGG 2 cut(s) 1092, 2365
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FaqI GGGAC 4 cut(s) 2, 260, 632, 1686
FauI CCCGC 1 cut(s) 549
FauNDI CATATG 1 cut(s) 1665
FbaI TGATCA 1 cut(s) 1851
Fnu4HI GCNGC 9 cut(s) 6, 435, 1351, 1455, 1716, 1791, 1935, 1938, 2169
FokI GGATG 1 cut(s) 2293
Fsp4HI GCNGC 9 cut(s) 6, 435, 1351, 1455, 1716, 1791, 1935, 1938, 2169
FspBI CTAG 4 cut(s) 326, 1364, 1770, 2072
GlaI GCGC 2 cut(s) 9, 637
GluI GCNGC 9 cut(s) 6, 435, 1351, 1455, 1716, 1791, 1935, 1938, 2169
HaeIII GGCC 6 cut(s) 131, 278, 926, 1536, 2003, 2195
HapII CCGG 1 cut(s) 1953
HgaI GACGC 2 cut(s) 67, 2036
HhaI GCGC 2 cut(s) 10, 638
Hin6I GCGC 2 cut(s) 8, 636
HinP1I GCGC 2 cut(s) 8, 636
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 3 cut(s) 254, 347, 2219
HpaII CCGG 1 cut(s) 1953
HphI GGTGA 3 cut(s) 383, 740, 1674
Hpy166II GTNNAC 3 cut(s) 34, 977, 1501
Hpy188I TCNGA 7 cut(s) 61, 352, 514, 767, 946, 1626, 2148
Hpy188III TCNNGA 5 cut(s) 662, 907, 1066, 1784, 1990
Hpy8I GTNNAC 3 cut(s) 34, 977, 1501
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 567, 990
HpyCH4III ACNGT 6 cut(s) 118, 395, 529, 679, 1900, 1948
HpyCH4IV ACGT 6 cut(s) 163, 1143, 1708, 1868, 2084, 2089
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 266, 275, 548, 1770
HpyF3I CTNAG 5 cut(s) 135, 321, 863, 1255, 1833
HpySE526I ACGT 6 cut(s) 163, 1143, 1708, 1868, 2084, 2089
HspAI GCGC 2 cut(s) 8, 636
Ksp22I TGATCA 1 cut(s) 1851
Kzo9I GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
LmnI GCTCC 3 cut(s) 511, 715, 767
Lsp1109I GCAGC 6 cut(s) 1362, 1466, 1777, 1921, 1949, 2155
LweI GCATC 6 cut(s) 217, 307, 538, 1716, 2271, 2377
MaeI CTAG 4 cut(s) 326, 1364, 1770, 2072
MaeII ACGT 6 cut(s) 163, 1143, 1708, 1868, 2084, 2089
MaeIII GTNAC 5 cut(s) 814, 1258, 1409, 1918, 2085
MalI GATC 9 cut(s) 366, 624, 738, 749, 787, 837, 1782, 1853, 2180
MboI GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
MfeI CAATTG 1 cut(s) 2262
MflI RGATCY 1 cut(s) 1780
MhlI GDGCHC 1 cut(s) 1912
MlsI TGGCCA 1 cut(s) 926
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 3 cut(s) 263, 356, 2213
MmeI TCCRAC 4 cut(s) 423, 745, 1235, 1737
Mox20I TGGCCA 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 2106
MscI TGGCCA 1 cut(s) 926
MseI TTAA 9 cut(s) 45, 147, 234, 281, 474, 591, 902, 992, 2360
MslI CAYNNNNRTG 2 cut(s) 1221, 2275
Msp20I TGGCCA 1 cut(s) 926
MspCI CTTAAG 1 cut(s) 991
MspI CCGG 1 cut(s) 1953
MspR9I CCNGG 3 cut(s) 271, 297, 1953
MunI CAATTG 1 cut(s) 2262
Mva1269I GAATGC 2 cut(s) 986, 1940
MvaI CCWGG 2 cut(s) 271, 297
MvnI CGCG 3 cut(s) 78, 437, 753
MwoI GCNNNNNNNGC 5 cut(s) 200, 266, 275, 548, 1770
NciI CCSGG 1 cut(s) 1953
NcoI CCATGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 1665
NdeII GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
NheI GCTAGC 1 cut(s) 1769
NmeAIII GCCGAG 1 cut(s) 2171
NmuCI GTSAC 3 cut(s) 814, 1409, 2085
NspI RCATGY 6 cut(s) 203, 975, 1130, 1375, 1808, 1908
NspV TTCGAA 1 cut(s) 571
PaeI GCATGC 3 cut(s) 203, 1130, 1808
PaqCI CACCTGC 1 cut(s) 716
PceI AGGCCT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 1324
PctI GAATGC 2 cut(s) 986, 1940
PdmI GAANNNNTTC 1 cut(s) 2106
PkrI GCNGC 9 cut(s) 7, 436, 1352, 1456, 1717, 1792, 1936, 1939, 2170
PleI GAGTC 3 cut(s) 262, 355, 2213
PpsI GAGTC 3 cut(s) 262, 355, 2213
Ppu21I YACGTR 1 cut(s) 1709
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 1584
Psp6I CCWGG 2 cut(s) 269, 295
PspGI CCWGG 2 cut(s) 269, 295
PspPI GGNCC 2 cut(s) 2001, 2194
PstI CTGCAG 1 cut(s) 1939
PsuI RGATCY 1 cut(s) 1780
RsaI GTAC 3 cut(s) 115, 976, 1897
RsaNI GTAC 3 cut(s) 114, 975, 1896
RseI CAYNNNNRTG 2 cut(s) 1221, 2275
SaqAI TTAA 9 cut(s) 45, 147, 234, 281, 474, 591, 902, 992, 2360
SatI GCNGC 9 cut(s) 6, 435, 1351, 1455, 1716, 1791, 1935, 1938, 2169
Sau3AI GATC 9 cut(s) 364, 622, 736, 747, 785, 835, 1780, 1851, 2178
Sau96I GGNCC 2 cut(s) 2001, 2194
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 3 cut(s) 263, 356, 2213
ScrFI CCNGG 3 cut(s) 271, 297, 1953
SduI GDGCHC 1 cut(s) 1912
SfaNI GCATC 6 cut(s) 217, 307, 538, 1716, 2271, 2377
SfcI CTRYAG 1 cut(s) 1935
SfuI TTCGAA 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 1221, 2275
SmlI CTYRAG 1 cut(s) 991
SmoI CTYRAG 1 cut(s) 991
SphI GCATGC 3 cut(s) 203, 1130, 1808
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 7 cut(s) 219, 300, 435, 556, 751, 1715, 2338
SspI AATATT 1 cut(s) 1294
SspMI CTAG 4 cut(s) 326, 1364, 1770, 2072
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 3 cut(s) 269, 295, 1951
StyI CCWWGG 2 cut(s) 1092, 2365
TaaI ACNGT 6 cut(s) 118, 395, 529, 679, 1900, 1948
TaiI ACGT 6 cut(s) 166, 1146, 1711, 1871, 2087, 2092
TaqI TCGA 6 cut(s) 546, 571, 681, 735, 1327, 2125
TatI WGTACW 3 cut(s) 113, 974, 1895
TauI GCSGC 2 cut(s) 437, 1718
Tru1I TTAA 9 cut(s) 45, 147, 234, 281, 474, 591, 902, 992, 2360
Tru9I TTAA 9 cut(s) 45, 147, 234, 281, 474, 591, 902, 992, 2360
TscAI CASTG 2 cut(s) 139, 2257
TseFI GTSAC 3 cut(s) 814, 1409, 2085
TseI GCWGC 7 cut(s) 5, 1350, 1454, 1790, 1934, 1937, 2168
Tsp45I GTSAC 3 cut(s) 814, 1409, 2085
TspGWI ACGGA 2 cut(s) 1301, 2152
TspRI CASTG 2 cut(s) 139, 2257
Vha464I CTTAAG 1 cut(s) 991
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 4 cut(s) 1010, 1359, 1427, 1985
XceI RCATGY 6 cut(s) 203, 975, 1130, 1375, 1808, 1908
XmnI GAANNNNTTC 1 cut(s) 2106
XspI CTAG 4 cut(s) 326, 1364, 1770, 2072
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.