protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 307 - 419 | 3.8e-22 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 618 |
| AccB1I | GGYRCC | 1 cut(s) | 35 |
| AccI | GTMKAC | 1 cut(s) | 66 |
| AclI | AACGTT | 1 cut(s) | 1112 |
| AclWI | GGATC | 1 cut(s) | 641 |
| AcsI | RAATTY | 3 cut(s) | 286, 509, 1128 |
| AcuI | CTGAAG | 1 cut(s) | 1184 |
| AfaI | GTAC | 3 cut(s) | 75, 782, 788 |
| AgsI | TTSAA | 6 cut(s) | 11, 204, 286, 291, 796, 1305 |
| AjiI | CACGTC | 1 cut(s) | 1137 |
| AjnI | CCWGG | 3 cut(s) | 742, 1006, 1274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 44, 76 |
| AluBI | AGCT | 5 cut(s) | 190, 409, 488, 688, 1478 |
| AluI | AGCT | 5 cut(s) | 190, 409, 488, 688, 1478 |
| Alw21I | GWGCWC | 1 cut(s) | 967 |
| Alw26I | GTCTC | 1 cut(s) | 929 |
| AlwI | GGATC | 1 cut(s) | 641 |
| AoxI | GGCC | 1 cut(s) | 1246 |
| ApeKI | GCWGC | 3 cut(s) | 749, 763, 989 |
| ApoI | RAATTY | 3 cut(s) | 286, 509, 1128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 664 |
| AsuII | TTCGAA | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 1377 |
| BanI | GGYRCC | 1 cut(s) | 35 |
| Bbv12I | GWGCWC | 1 cut(s) | 967 |
| BbvI | GCAGC | 3 cut(s) | 761, 775, 976 |
| BccI | CCATC | 3 cut(s) | 599, 721, 986 |
| BciT130I | CCWGG | 3 cut(s) | 744, 1008, 1276 |
| BcoDI | GTCTC | 1 cut(s) | 929 |
| BfaI | CTAG | 3 cut(s) | 42, 257, 485 |
| BfmI | CTRYAG | 2 cut(s) | 990, 1479 |
| BisI | GCNGC | 3 cut(s) | 750, 764, 990 |
| BlsI | GCNGC | 3 cut(s) | 751, 765, 991 |
| BmcAI | AGTACT | 1 cut(s) | 788 |
| Bme1390I | CCNGG | 3 cut(s) | 744, 1008, 1276 |
| BmgBI | CACGTC | 1 cut(s) | 1137 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 3 cut(s) | 744, 1008, 1276 |
| BmrI | ACTGGG | 1 cut(s) | 658 |
| BmsI | GCATC | 1 cut(s) | 1069 |
| BmuI | ACTGGG | 1 cut(s) | 658 |
| BpmI | CTGGAG | 1 cut(s) | 1029 |
| Bpu14I | TTCGAA | 1 cut(s) | 230 |
| Bsa29I | ATCGAT | 1 cut(s) | 1044 |
| BsaJI | CCNNGG | 1 cut(s) | 872 |
| Bse1I | ACTGG | 2 cut(s) | 653, 1030 |
| Bse3DI | GCAATG | 3 cut(s) | 162, 752, 807 |
| BseBI | CCWGG | 3 cut(s) | 744, 1008, 1276 |
| BseCI | ATCGAT | 1 cut(s) | 1044 |
| BseDI | CCNNGG | 1 cut(s) | 872 |
| BseGI | GGATG | 1 cut(s) | 933 |
| BseMI | GCAATG | 3 cut(s) | 162, 752, 807 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseNI | ACTGG | 2 cut(s) | 653, 1030 |
| BseSI | GKGCMC | 1 cut(s) | 1377 |
| BseXI | GCAGC | 3 cut(s) | 761, 775, 976 |
| BseYI | CCCAGC | 1 cut(s) | 698 |
| BsgI | GTGCAG | 2 cut(s) | 702, 768 |
| BshFI | GGCC | 1 cut(s) | 1248 |
| BshNI | GGYRCC | 1 cut(s) | 35 |
| BshVI | ATCGAT | 1 cut(s) | 1044 |
| BsiHKAI | GWGCWC | 1 cut(s) | 967 |
| BslFI | GGGAC | 2 cut(s) | 186, 694 |
| BsmAI | GTCTC | 1 cut(s) | 929 |
| BsmFI | GGGAC | 2 cut(s) | 186, 694 |
| BsnI | GGCC | 1 cut(s) | 1248 |
| Bsp119I | TTCGAA | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 2 cut(s) | 967, 1377 |
| Bsp143I | GATC | 1 cut(s) | 633 |
| BspANI | GGCC | 1 cut(s) | 1248 |
| BspCNI | CTCAG | 1 cut(s) | 359 |
| BspDI | ATCGAT | 1 cut(s) | 1044 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMAI | CTGCAG | 1 cut(s) | 994 |
| BspPI | GGATC | 1 cut(s) | 641 |
| BspT104I | TTCGAA | 1 cut(s) | 230 |
| BspT107I | GGYRCC | 1 cut(s) | 35 |
| BsrDI | GCAATG | 3 cut(s) | 162, 752, 807 |
| BsrI | ACTGG | 2 cut(s) | 653, 1030 |
| BssECI | CCNNGG | 1 cut(s) | 872 |
| BssMI | GATC | 1 cut(s) | 633 |
| BssT1I | CCWWGG | 1 cut(s) | 872 |
| Bst2UI | CCWGG | 3 cut(s) | 744, 1008, 1276 |
| Bst4CI | ACNGT | 4 cut(s) | 310, 899, 955, 1379 |
| Bst6I | CTCTTC | 1 cut(s) | 414 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1241 |
| BstBI | TTCGAA | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 1 cut(s) | 1246 |
| BstDEI | CTNAG | 2 cut(s) | 346, 831 |
| BstF5I | GGATG | 1 cut(s) | 933 |
| BstKTI | GATC | 1 cut(s) | 636 |
| BstMAI | GTCTC | 1 cut(s) | 929 |
| BstMBI | GATC | 1 cut(s) | 633 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 763, 1241, 1475 |
| BstNI | CCWGG | 3 cut(s) | 744, 1008, 1276 |
| BstNSI | RCATGY | 1 cut(s) | 135 |
| BstSCI | CCNGG | 3 cut(s) | 742, 1006, 1274 |
| BstSFI | CTRYAG | 2 cut(s) | 990, 1479 |
| BstSLI | GKGCMC | 1 cut(s) | 1377 |
| BstV1I | GCAGC | 3 cut(s) | 761, 775, 976 |
| BstX2I | RGATCY | 1 cut(s) | 633 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 633 |
| Bsu15I | ATCGAT | 1 cut(s) | 1044 |
| BsuRI | GGCC | 1 cut(s) | 1248 |
| BsuTUI | ATCGAT | 1 cut(s) | 1044 |
| BtrI | CACGTC | 1 cut(s) | 1137 |
| BtsCI | GGATG | 1 cut(s) | 933 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 3 cut(s) | 174, 904, 951 |
| Cac8I | GCNNGC | 1 cut(s) | 1246 |
| ClaI | ATCGAT | 1 cut(s) | 1044 |
| Csp6I | GTAC | 3 cut(s) | 74, 781, 787 |
| CviAII | CATG | 6 cut(s) | 132, 383, 412, 982, 1225, 1444 |
| CviJI | RGCY | 8 cut(s) | 190, 409, 488, 688, 698, 1029, 1248, 1478 |
| CviKI_1 | RGCY | 8 cut(s) | 190, 409, 488, 688, 698, 1029, 1248, 1478 |
| CviQI | GTAC | 3 cut(s) | 74, 781, 787 |
| DdeI | CTNAG | 2 cut(s) | 346, 831 |
| DpnI | GATC | 1 cut(s) | 635 |
| DpnII | GATC | 1 cut(s) | 633 |
| DraI | TTTAAA | 3 cut(s) | 336, 405, 1491 |
| Eam1104I | CTCTTC | 1 cut(s) | 414 |
| EarI | CTCTTC | 1 cut(s) | 414 |
| Eco130I | CCWWGG | 1 cut(s) | 872 |
| Eco57I | CTGAAG | 1 cut(s) | 1184 |
| EcoRI | GAATTC | 2 cut(s) | 286, 1128 |
| EcoRII | CCWGG | 3 cut(s) | 742, 1006, 1274 |
| EcoT14I | CCWWGG | 1 cut(s) | 872 |
| ErhI | CCWWGG | 1 cut(s) | 872 |
| FaeI | CATG | 6 cut(s) | 135, 386, 415, 985, 1228, 1447 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 714, 746, 846, 878 |
| FaqI | GGGAC | 2 cut(s) | 186, 694 |
| FatI | CATG | 6 cut(s) | 131, 382, 411, 981, 1224, 1443 |
| FauNDI | CATATG | 1 cut(s) | 693 |
| FblI | GTMKAC | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 3 cut(s) | 750, 764, 990 |
| FokI | GGATG | 1 cut(s) | 940 |
| Fsp4HI | GCNGC | 3 cut(s) | 750, 764, 990 |
| FspBI | CTAG | 3 cut(s) | 42, 257, 485 |
| GluI | GCNGC | 3 cut(s) | 750, 764, 990 |
| GsaI | CCCAGC | 1 cut(s) | 702 |
| GsuI | CTGGAG | 1 cut(s) | 1029 |
| HaeIII | GGCC | 1 cut(s) | 1248 |
| Hin1II | CATG | 6 cut(s) | 135, 386, 415, 985, 1228, 1447 |
| HincII | GTYRAC | 2 cut(s) | 18, 1116 |
| HindII | GTYRAC | 2 cut(s) | 18, 1116 |
| HinfI | GANTC | 4 cut(s) | 351, 892, 1271, 1285 |
| HphI | GGTGA | 2 cut(s) | 139, 664 |
| Hpy166II | GTNNAC | 5 cut(s) | 18, 67, 388, 770, 1116 |
| Hpy188I | TCNGA | 4 cut(s) | 1078, 1127, 1290, 1383 |
| Hpy188III | TCNNGA | 6 cut(s) | 348, 539, 605, 839, 1162, 1268 |
| Hpy8I | GTNNAC | 5 cut(s) | 18, 67, 388, 770, 1116 |
| Hpy99I | CGWCG | 1 cut(s) | 1269 |
| HpyAV | CCTTC | 7 cut(s) | 67, 212, 559, 632, 908, 1259, 1364 |
| HpyCH4III | ACNGT | 4 cut(s) | 310, 899, 955, 1379 |
| HpyCH4IV | ACGT | 7 cut(s) | 175, 504, 585, 1112, 1118, 1136, 1141 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 763, 1241, 1475 |
| HpyF3I | CTNAG | 2 cut(s) | 346, 831 |
| HpySE526I | ACGT | 7 cut(s) | 175, 504, 585, 1112, 1118, 1136, 1141 |
| Hsp92II | CATG | 6 cut(s) | 135, 386, 415, 985, 1228, 1447 |
| Kzo9I | GATC | 1 cut(s) | 633 |
| LmnI | GCTCC | 1 cut(s) | 140 |
| Lsp1109I | GCAGC | 3 cut(s) | 761, 775, 976 |
| LweI | GCATC | 1 cut(s) | 1069 |
| MaeI | CTAG | 3 cut(s) | 42, 257, 485 |
| MaeII | ACGT | 7 cut(s) | 175, 504, 585, 1112, 1118, 1136, 1141 |
| MaeIII | GTNAC | 5 cut(s) | 259, 514, 652, 1137, 1142 |
| MalI | GATC | 1 cut(s) | 635 |
| MboI | GATC | 1 cut(s) | 633 |
| MboII | GAAGA | 5 cut(s) | 385, 431, 472, 1089, 1163 |
| MflI | RGATCY | 1 cut(s) | 633 |
| MhlI | GDGCHC | 2 cut(s) | 967, 1377 |
| MlyI | GAGTC | 1 cut(s) | 1280 |
| MmeI | TCCRAC | 2 cut(s) | 1313, 1361 |
| MnlI | CCTC | 8 cut(s) | 26, 49, 208, 329, 489, 837, 1004, 1379 |
| MroXI | GAANNNNTTC | 1 cut(s) | 56 |
| MseI | TTAA | 6 cut(s) | 335, 404, 678, 732, 1058, 1490 |
| MslI | CAYNNNNRTG | 2 cut(s) | 167, 1181 |
| MspR9I | CCNGG | 3 cut(s) | 744, 1008, 1276 |
| MvaI | CCWGG | 3 cut(s) | 744, 1008, 1276 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 763, 1241, 1475 |
| NdeI | CATATG | 1 cut(s) | 693 |
| NdeII | GATC | 1 cut(s) | 633 |
| NlaIII | CATG | 6 cut(s) | 135, 386, 415, 985, 1228, 1447 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 2 cut(s) | 652, 1137 |
| NspI | RCATGY | 1 cut(s) | 135 |
| NspV | TTCGAA | 1 cut(s) | 230 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 591, 1109 |
| PdmI | GAANNNNTTC | 1 cut(s) | 56 |
| PfeI | GAWTC | 3 cut(s) | 351, 892, 1285 |
| PfoI | TCCNGGA | 2 cut(s) | 1006, 1274 |
| PkrI | GCNGC | 3 cut(s) | 751, 765, 991 |
| PleI | GAGTC | 1 cut(s) | 1279 |
| PpsI | GAGTC | 1 cut(s) | 1279 |
| PsiI | TTATAA | 1 cut(s) | 618 |
| Psp1406I | AACGTT | 1 cut(s) | 1112 |
| Psp6I | CCWGG | 3 cut(s) | 742, 1006, 1274 |
| PspFI | CCCAGC | 1 cut(s) | 698 |
| PspGI | CCWGG | 3 cut(s) | 742, 1006, 1274 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PstI | CTGCAG | 1 cut(s) | 994 |
| PsuI | RGATCY | 1 cut(s) | 633 |
| RsaI | GTAC | 3 cut(s) | 75, 782, 788 |
| RsaNI | GTAC | 3 cut(s) | 74, 781, 787 |
| RseI | CAYNNNNRTG | 2 cut(s) | 167, 1181 |
| SaqAI | TTAA | 6 cut(s) | 335, 404, 678, 732, 1058, 1490 |
| SatI | GCNGC | 3 cut(s) | 750, 764, 990 |
| Sau3AI | GATC | 1 cut(s) | 633 |
| ScaI | AGTACT | 1 cut(s) | 788 |
| SchI | GAGTC | 1 cut(s) | 1280 |
| ScrFI | CCNGG | 3 cut(s) | 744, 1008, 1276 |
| SduI | GDGCHC | 2 cut(s) | 967, 1377 |
| SfaNI | GCATC | 1 cut(s) | 1069 |
| SfcI | CTRYAG | 2 cut(s) | 990, 1479 |
| SfuI | TTCGAA | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 167, 1181 |
| SspMI | CTAG | 3 cut(s) | 42, 257, 485 |
| StyD4I | CCNGG | 3 cut(s) | 742, 1006, 1274 |
| StyI | CCWWGG | 1 cut(s) | 872 |
| TaaI | ACNGT | 4 cut(s) | 310, 899, 955, 1379 |
| TaiI | ACGT | 7 cut(s) | 178, 507, 588, 1115, 1121, 1139, 1144 |
| TaqI | TCGA | 3 cut(s) | 230, 594, 1044 |
| TaqII | GACCGA | 1 cut(s) | 103 |
| TatI | WGTACW | 2 cut(s) | 73, 786 |
| TfiI | GAWTC | 3 cut(s) | 351, 892, 1285 |
| Tru1I | TTAA | 6 cut(s) | 335, 404, 678, 732, 1058, 1490 |
| Tru9I | TTAA | 6 cut(s) | 335, 404, 678, 732, 1058, 1490 |
| TscAI | CASTG | 3 cut(s) | 174, 904, 958 |
| TseFI | GTSAC | 2 cut(s) | 652, 1137 |
| TseI | GCWGC | 3 cut(s) | 749, 763, 989 |
| Tsp45I | GTSAC | 2 cut(s) | 652, 1137 |
| TspDTI | ATGAA | 6 cut(s) | 65, 381, 386, 944, 1030, 1062 |
| TspRI | CASTG | 3 cut(s) | 174, 904, 958 |
| XapI | RAATTY | 3 cut(s) | 286, 509, 1128 |
| XceI | RCATGY | 1 cut(s) | 135 |
| XmiI | GTMKAC | 1 cut(s) | 66 |
| XmnI | GAANNNNTTC | 1 cut(s) | 56 |
| XspI | CTAG | 3 cut(s) | 42, 257, 485 |
| ZrmI | AGTACT | 1 cut(s) | 788 |