protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 90, 1635, 1685, 1933 |
| AccB1I | GGYRCC | 1 cut(s) | 1978 |
| AccBSI | CCGCTC | 1 cut(s) | 121 |
| AccI | GTMKAC | 3 cut(s) | 1029, 1303, 1405 |
| AccII | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| AccIII | TCCGGA | 1 cut(s) | 322 |
| AclWI | GGATC | 7 cut(s) | 8, 21, 195, 590, 1142, 1615, 1832 |
| AcoI | YGGCCR | 3 cut(s) | 54, 116, 1862 |
| AcsI | RAATTY | 4 cut(s) | 377, 602, 1680, 2023 |
| AcuI | CTGAAG | 3 cut(s) | 564, 780, 1820 |
| AdeI | CACNNNGTG | 1 cut(s) | 1531 |
| AfaI | GTAC | 7 cut(s) | 5, 182, 816, 1311, 1413, 1723, 1727 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 23, 97, 160, 868, 967, 1975 |
| AflII | CTTAAG | 1 cut(s) | 1244 |
| AflIII | ACRYGT | 4 cut(s) | 1306, 1325, 1408, 1427 |
| AgeI | ACCGGT | 1 cut(s) | 977 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 272 |
| AjnI | CCWGG | 2 cut(s) | 629, 710 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 716, 748, 1547, 1579 |
| Alw21I | GWGCWC | 2 cut(s) | 832, 1783 |
| Alw26I | GTCTC | 3 cut(s) | 117, 122, 385 |
| AlwI | GGATC | 7 cut(s) | 8, 21, 195, 590, 1142, 1615, 1832 |
| Aor13HI | TCCGGA | 1 cut(s) | 322 |
| AoxI | GGCC | 6 cut(s) | 25, 54, 116, 151, 633, 1862 |
| ApaI | GGGCCC | 1 cut(s) | 155 |
| ApeKI | GCWGC | 8 cut(s) | 72, 145, 446, 1534, 1549, 1598, 1804, 1938 |
| ApoI | RAATTY | 4 cut(s) | 377, 602, 1680, 2023 |
| AsiGI | ACCGGT | 1 cut(s) | 977 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 7 cut(s) | 26, 88, 151, 152, 633, 853, 1255 |
| AsuC2I | CCSGG | 2 cut(s) | 98, 160 |
| AsuHPI | GGTGA | 6 cut(s) | 293, 400, 409, 809, 894, 1517 |
| AvaII | GGWCC | 3 cut(s) | 88, 853, 1255 |
| AxyI | CCTNAGG | 3 cut(s) | 1335, 1437, 1890 |
| BaeGI | GKGCMC | 1 cut(s) | 155 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BanI | GGYRCC | 1 cut(s) | 1978 |
| BanII | GRGCYC | 2 cut(s) | 155, 1783 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 164, 196 |
| Bbv12I | GWGCWC | 2 cut(s) | 832, 1783 |
| BbvI | GCAGC | 8 cut(s) | 84, 132, 458, 1521, 1536, 1585, 1816, 1925 |
| BccI | CCATC | 3 cut(s) | 788, 1031, 1171 |
| BceAI | ACGGC | 2 cut(s) | 60, 714 |
| BciT130I | CCWGG | 2 cut(s) | 631, 712 |
| BciVI | GTATCC | 3 cut(s) | 1069, 1340, 1442 |
| BcnI | CCSGG | 2 cut(s) | 98, 160 |
| BcoDI | GTCTC | 3 cut(s) | 117, 122, 385 |
| BfaI | CTAG | 6 cut(s) | 462, 995, 1067, 1775, 1983, 2036 |
| BfmI | CTRYAG | 3 cut(s) | 83, 1590, 1686 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BfrI | CTTAAG | 1 cut(s) | 1244 |
| BfuAI | ACCTGC | 4 cut(s) | 90, 1635, 1685, 1933 |
| BfuI | GTATCC | 3 cut(s) | 1069, 1340, 1442 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 641 |
| BglII | AGATCT | 1 cut(s) | 216 |
| BlpI | GCTNAGC | 1 cut(s) | 1263 |
| Bme1390I | CCNGG | 4 cut(s) | 98, 160, 631, 712 |
| Bme18I | GGWCC | 3 cut(s) | 88, 853, 1255 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 7 cut(s) | 26, 88, 151, 152, 633, 853, 1255 |
| BmiI | GGNNCC | 6 cut(s) | 15, 80, 153, 154, 1256, 1980 |
| BmrFI | CCNGG | 4 cut(s) | 98, 160, 631, 712 |
| BmsI | GCATC | 5 cut(s) | 185, 658, 1681, 1867, 1925 |
| BpmI | CTGGAG | 3 cut(s) | 53, 803, 846 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1263 |
| BpuEI | CTTGAG | 1 cut(s) | 1588 |
| BpuMI | CCSGG | 2 cut(s) | 98, 160 |
| BsaAI | YACGTR | 6 cut(s) | 184, 1309, 1328, 1411, 1430, 1725 |
| BsaBI | GATNNNNATC | 3 cut(s) | 12, 221, 1836 |
| BsaJI | CCNNGG | 3 cut(s) | 17, 159, 630 |
| BsaWI | WCCGGW | 2 cut(s) | 322, 977 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 23, 97, 160, 868, 967, 1975 |
| Bse118I | RCCGGY | 1 cut(s) | 977 |
| Bse1I | ACTGG | 2 cut(s) | 515, 961 |
| Bse21I | CCTNAGG | 3 cut(s) | 1335, 1437, 1890 |
| Bse8I | GATNNNNATC | 3 cut(s) | 12, 221, 1836 |
| BseAI | TCCGGA | 1 cut(s) | 322 |
| BseBI | CCWGG | 2 cut(s) | 631, 712 |
| BseDI | CCNNGG | 3 cut(s) | 17, 159, 630 |
| BseGI | GGATG | 4 cut(s) | 200, 673, 1354, 1456 |
| BseJI | GATNNNNATC | 3 cut(s) | 12, 221, 1836 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 23, 97, 160, 868, 967, 1975 |
| BseMII | CTCAG | 8 cut(s) | 386, 663, 1092, 1175, 1254, 1326, 1428, 1904 |
| BseNI | ACTGG | 2 cut(s) | 515, 961 |
| BseRI | GAGGAG | 6 cut(s) | 233, 236, 309, 1038, 1376, 1478 |
| BseSI | GKGCMC | 1 cut(s) | 155 |
| BseX3I | CGGCCG | 1 cut(s) | 116 |
| BseXI | GCAGC | 8 cut(s) | 84, 132, 458, 1521, 1536, 1585, 1816, 1925 |
| BseYI | CCCAGC | 2 cut(s) | 148, 1583 |
| BsgI | GTGCAG | 1 cut(s) | 1637 |
| Bsh1236I | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| Bsh1285I | CGRYCG | 3 cut(s) | 70, 97, 119 |
| BshFI | GGCC | 6 cut(s) | 27, 56, 118, 153, 635, 1864 |
| BshNI | GGYRCC | 1 cut(s) | 1978 |
| BshTI | ACCGGT | 1 cut(s) | 977 |
| BsiEI | CGRYCG | 3 cut(s) | 70, 97, 119 |
| BsiHKAI | GWGCWC | 2 cut(s) | 832, 1783 |
| BsiSI | CCGG | 8 cut(s) | 76, 97, 159, 252, 264, 323, 978, 1553 |
| BslFI | GGGAC | 3 cut(s) | 443, 569, 1268 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 23, 97, 160, 868, 967, 1975 |
| BsmAI | GTCTC | 3 cut(s) | 117, 122, 385 |
| BsmBI | CGTCTC | 3 cut(s) | 117, 122, 385 |
| BsmFI | GGGAC | 3 cut(s) | 443, 569, 1268 |
| BsnI | GGCC | 6 cut(s) | 27, 56, 118, 153, 635, 1864 |
| Bsp120I | GGGCCC | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 3 cut(s) | 155, 832, 1783 |
| Bsp13I | TCCGGA | 1 cut(s) | 322 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1263 |
| Bsp19I | CCATGG | 1 cut(s) | 17 |
| Bsp68I | TCGCGA | 2 cut(s) | 1398, 1500 |
| BspANI | GGCC | 6 cut(s) | 27, 56, 118, 153, 635, 1864 |
| BspCNI | CTCAG | 8 cut(s) | 385, 664, 1093, 1176, 1255, 1327, 1429, 1903 |
| BspEI | TCCGGA | 1 cut(s) | 322 |
| BspFNI | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| BspLI | GGNNCC | 6 cut(s) | 15, 80, 153, 154, 1256, 1980 |
| BspMAI | CTGCAG | 1 cut(s) | 87 |
| BspMI | ACCTGC | 4 cut(s) | 90, 1635, 1685, 1933 |
| BspPI | GGATC | 7 cut(s) | 8, 21, 195, 590, 1142, 1615, 1832 |
| BspT107I | GGYRCC | 1 cut(s) | 1978 |
| BspTI | CTTAAG | 1 cut(s) | 1244 |
| BsrBI | CCGCTC | 1 cut(s) | 121 |
| BsrFI | RCCGGY | 1 cut(s) | 977 |
| BsrI | ACTGG | 2 cut(s) | 515, 961 |
| BssAI | RCCGGY | 1 cut(s) | 977 |
| BssECI | CCNNGG | 3 cut(s) | 17, 159, 630 |
| BssNAI | GTATAC | 2 cut(s) | 1304, 1406 |
| BssT1I | CCWWGG | 1 cut(s) | 17 |
| Bst1107I | GTATAC | 2 cut(s) | 1304, 1406 |
| Bst2UI | CCWGG | 2 cut(s) | 631, 712 |
| Bst4CI | ACNGT | 7 cut(s) | 232, 292, 454, 732, 906, 1034, 1561 |
| Bst6I | CTCTTC | 3 cut(s) | 951, 1244, 1353 |
| BstAFI | CTTAAG | 1 cut(s) | 1244 |
| BstBAI | YACGTR | 6 cut(s) | 184, 1309, 1328, 1411, 1430, 1725 |
| BstC8I | GCNNGC | 7 cut(s) | 29, 143, 257, 261, 540, 642, 1809 |
| BstDSI | CCRYGG | 1 cut(s) | 17 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1973 |
| BstF5I | GGATG | 4 cut(s) | 200, 673, 1354, 1456 |
| BstFNI | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 3 cut(s) | 117, 122, 385 |
| BstMCI | CGRYCG | 3 cut(s) | 70, 97, 119 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 641, 707, 1595 |
| BstNI | CCWGG | 2 cut(s) | 631, 712 |
| BstNSI | RCATGY | 3 cut(s) | 836, 1736, 1811 |
| BstSCI | CCNGG | 4 cut(s) | 96, 158, 629, 710 |
| BstSFI | CTRYAG | 3 cut(s) | 83, 1590, 1686 |
| BstSLI | GKGCMC | 1 cut(s) | 155 |
| BstSNI | TACGTA | 1 cut(s) | 1725 |
| BstUI | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| BstV1I | GCAGC | 8 cut(s) | 84, 132, 458, 1521, 1536, 1585, 1816, 1925 |
| BstX2I | RGATCY | 4 cut(s) | 13, 187, 216, 595 |
| BstYI | RGATCY | 4 cut(s) | 13, 187, 216, 595 |
| BstZ17I | GTATAC | 2 cut(s) | 1304, 1406 |
| BstZI | CGGCCG | 1 cut(s) | 116 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1335, 1437, 1890 |
| BsuI | GTATCC | 3 cut(s) | 1069, 1340, 1442 |
| BsuRI | GGCC | 6 cut(s) | 27, 56, 118, 153, 635, 1864 |
| BtgI | CCRYGG | 1 cut(s) | 17 |
| BtsCI | GGATG | 4 cut(s) | 200, 673, 1354, 1456 |
| BtuMI | TCGCGA | 2 cut(s) | 1398, 1500 |
| BveI | ACCTGC | 4 cut(s) | 90, 1635, 1685, 1933 |
| Cac8I | GCNNGC | 7 cut(s) | 29, 143, 257, 261, 540, 642, 1809 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr10I | RCCGGY | 1 cut(s) | 977 |
| Cfr13I | GGNCC | 7 cut(s) | 26, 88, 151, 152, 633, 853, 1255 |
| CpoI | CGGWCCG | 1 cut(s) | 853 |
| CseI | GACGC | 3 cut(s) | 139, 187, 287 |
| Csp6I | GTAC | 7 cut(s) | 4, 181, 815, 1310, 1412, 1722, 1726 |
| CspAI | ACCGGT | 1 cut(s) | 977 |
| CspI | CGGWCCG | 1 cut(s) | 853 |
| CviAII | CATG | 7 cut(s) | 18, 308, 358, 833, 1733, 1808, 2041 |
| CviQI | GTAC | 7 cut(s) | 4, 181, 815, 1310, 1412, 1722, 1726 |
| DraIII | CACNNNGTG | 1 cut(s) | 1531 |
| DriI | GACNNNNNGTC | 1 cut(s) | 272 |
| EaeI | YGGCCR | 3 cut(s) | 54, 116, 1862 |
| EagI | CGGCCG | 1 cut(s) | 116 |
| Eam1104I | CTCTTC | 3 cut(s) | 951, 1244, 1353 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 3 cut(s) | 951, 1244, 1353 |
| EciI | GGCGGA | 1 cut(s) | 62 |
| Ecl136II | GAGCTC | 1 cut(s) | 1781 |
| EclXI | CGGCCG | 1 cut(s) | 116 |
| Eco105I | TACGTA | 1 cut(s) | 1725 |
| Eco130I | CCWWGG | 1 cut(s) | 17 |
| Eco24I | GRGCYC | 2 cut(s) | 155, 1783 |
| Eco47I | GGWCC | 3 cut(s) | 88, 853, 1255 |
| Eco52I | CGGCCG | 1 cut(s) | 116 |
| Eco53kI | GAGCTC | 1 cut(s) | 1781 |
| Eco57I | CTGAAG | 3 cut(s) | 564, 780, 1820 |
| Eco81I | CCTNAGG | 3 cut(s) | 1335, 1437, 1890 |
| EcoICRI | GAGCTC | 1 cut(s) | 1781 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1973 |
| EcoO109I | RGGNCCY | 3 cut(s) | 88, 152, 633 |
| EcoRI | GAATTC | 1 cut(s) | 602 |
| EcoRII | CCWGG | 2 cut(s) | 629, 710 |
| EcoT14I | CCWWGG | 1 cut(s) | 17 |
| EcoT38I | GRGCYC | 2 cut(s) | 155, 1783 |
| ErhI | CCWWGG | 1 cut(s) | 17 |
| Esp3I | CGTCTC | 3 cut(s) | 117, 122, 385 |
| FaeI | CATG | 7 cut(s) | 21, 311, 361, 836, 1736, 1811, 2044 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1859, 1891 |
| FaqI | GGGAC | 3 cut(s) | 443, 569, 1268 |
| FatI | CATG | 7 cut(s) | 17, 307, 357, 832, 1732, 1807, 2040 |
| FauI | CCCGC | 2 cut(s) | 36, 653 |
| FblI | GTMKAC | 3 cut(s) | 1029, 1303, 1405 |
| FokI | GGATG | 4 cut(s) | 207, 680, 1361, 1463 |
| FriOI | GRGCYC | 2 cut(s) | 155, 1783 |
| FspBI | CTAG | 6 cut(s) | 462, 995, 1067, 1775, 1983, 2036 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GsaI | CCCAGC | 2 cut(s) | 152, 1587 |
| GsuI | CTGGAG | 3 cut(s) | 53, 803, 846 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 6 cut(s) | 27, 56, 118, 153, 635, 1864 |
| HapII | CCGG | 8 cut(s) | 76, 97, 159, 252, 264, 323, 978, 1553 |
| HgaI | GACGC | 3 cut(s) | 139, 187, 287 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1II | CATG | 7 cut(s) | 21, 311, 361, 836, 1736, 1811, 2044 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HincII | GTYRAC | 1 cut(s) | 766 |
| HindII | GTYRAC | 1 cut(s) | 766 |
| HindIII | AAGCTT | 2 cut(s) | 609, 1241 |
| HinfI | GANTC | 9 cut(s) | 50, 414, 674, 806, 1207, 1387, 1489, 1621, 1871 |
| HpaII | CCGG | 8 cut(s) | 76, 97, 159, 252, 264, 323, 978, 1553 |
| HphI | GGTGA | 6 cut(s) | 293, 400, 409, 809, 894, 1517 |
| Hpy166II | GTNNAC | 5 cut(s) | 766, 1002, 1030, 1304, 1406 |
| Hpy8I | GTNNAC | 5 cut(s) | 766, 1002, 1030, 1304, 1406 |
| Hpy99I | CGWCG | 4 cut(s) | 65, 68, 128, 700 |
| HpyAV | CCTTC | 6 cut(s) | 560, 1145, 1161, 1394, 1496, 1969 |
| HpyCH4III | ACNGT | 7 cut(s) | 232, 292, 454, 732, 906, 1034, 1561 |
| HpyCH4IV | ACGT | 8 cut(s) | 183, 558, 972, 1308, 1327, 1410, 1429, 1724 |
| HpyCH4V | TGCA | 8 cut(s) | 85, 640, 836, 1107, 1618, 1694, 1858, 1941 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 641, 707, 1595 |
| HpySE526I | ACGT | 8 cut(s) | 183, 558, 972, 1308, 1327, 1410, 1429, 1724 |
| Hsp92II | CATG | 7 cut(s) | 21, 311, 361, 836, 1736, 1811, 2044 |
| HspAI | GCGC | 1 cut(s) | 104 |
| Kpn2I | TCCGGA | 1 cut(s) | 322 |
| LmnI | GCTCC | 4 cut(s) | 163, 784, 827, 1778 |
| Lsp1109I | GCAGC | 8 cut(s) | 84, 132, 458, 1521, 1536, 1585, 1816, 1925 |
| LweI | GCATC | 5 cut(s) | 185, 658, 1681, 1867, 1925 |
| MaeI | CTAG | 6 cut(s) | 462, 995, 1067, 1775, 1983, 2036 |
| MaeII | ACGT | 8 cut(s) | 183, 558, 972, 1308, 1327, 1410, 1429, 1724 |
| MaeIII | GTNAC | 4 cut(s) | 299, 900, 973, 1505 |
| MbiI | CCGCTC | 1 cut(s) | 121 |
| MfeI | CAATTG | 1 cut(s) | 1784 |
| MflI | RGATCY | 4 cut(s) | 13, 187, 216, 595 |
| MhlI | GDGCHC | 3 cut(s) | 155, 832, 1783 |
| MlyI | GAGTC | 4 cut(s) | 44, 683, 800, 1201 |
| MmeI | TCCRAC | 1 cut(s) | 1945 |
| MroI | TCCGGA | 1 cut(s) | 322 |
| MseI | TTAA | 7 cut(s) | 474, 480, 489, 684, 908, 1245, 1650 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspA1I | CMGCKG | 1 cut(s) | 31 |
| MspCI | CTTAAG | 1 cut(s) | 1244 |
| MspI | CCGG | 8 cut(s) | 76, 97, 159, 252, 264, 323, 978, 1553 |
| MspR9I | CCNGG | 4 cut(s) | 98, 160, 631, 712 |
| MunI | CAATTG | 1 cut(s) | 1784 |
| MvaI | CCWGG | 2 cut(s) | 631, 712 |
| MvnI | CGCG | 4 cut(s) | 298, 858, 1398, 1500 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 641, 707, 1595 |
| NciI | CCSGG | 2 cut(s) | 98, 160 |
| NcoI | CCATGG | 1 cut(s) | 17 |
| NlaIII | CATG | 7 cut(s) | 21, 311, 361, 836, 1736, 1811, 2044 |
| NlaIV | GGNNCC | 6 cut(s) | 15, 80, 153, 154, 1256, 1980 |
| NmeAIII | GCCGAG | 2 cut(s) | 32, 94 |
| NmuCI | GTSAC | 3 cut(s) | 299, 900, 1505 |
| NruI | TCGCGA | 2 cut(s) | 1398, 1500 |
| NspI | RCATGY | 3 cut(s) | 836, 1736, 1811 |
| PaeI | GCATGC | 1 cut(s) | 1811 |
| PfeI | GAWTC | 5 cut(s) | 414, 1387, 1489, 1621, 1871 |
| PflFI | GACNNNGTC | 1 cut(s) | 560 |
| PinAI | ACCGGT | 1 cut(s) | 977 |
| PleI | GAGTC | 4 cut(s) | 44, 682, 800, 1201 |
| PpsI | GAGTC | 4 cut(s) | 44, 682, 800, 1201 |
| Ppu21I | YACGTR | 6 cut(s) | 184, 1309, 1328, 1411, 1430, 1725 |
| PpuMI | RGGWCCY | 1 cut(s) | 88 |
| Psp124BI | GAGCTC | 1 cut(s) | 1783 |
| Psp5II | RGGWCCY | 1 cut(s) | 88 |
| Psp6I | CCWGG | 2 cut(s) | 629, 710 |
| PspFI | CCCAGC | 2 cut(s) | 148, 1583 |
| PspGI | CCWGG | 2 cut(s) | 629, 710 |
| PspN4I | GGNNCC | 6 cut(s) | 15, 80, 153, 154, 1256, 1980 |
| PspOMI | GGGCCC | 1 cut(s) | 151 |
| PspPI | GGNCC | 7 cut(s) | 26, 88, 151, 152, 633, 853, 1255 |
| PspPPI | RGGWCCY | 1 cut(s) | 88 |
| PstI | CTGCAG | 1 cut(s) | 87 |
| PsuI | RGATCY | 4 cut(s) | 13, 187, 216, 595 |
| PsyI | GACNNNGTC | 1 cut(s) | 560 |
| RruI | TCGCGA | 2 cut(s) | 1398, 1500 |
| RsaI | GTAC | 7 cut(s) | 5, 182, 816, 1311, 1413, 1723, 1727 |
| RsaNI | GTAC | 7 cut(s) | 4, 181, 815, 1310, 1412, 1722, 1726 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| Rsr2I | CGGWCCG | 1 cut(s) | 853 |
| RsrII | CGGWCCG | 1 cut(s) | 853 |
| SacI | GAGCTC | 1 cut(s) | 1783 |
| SaqAI | TTAA | 7 cut(s) | 474, 480, 489, 684, 908, 1245, 1650 |
| Sau96I | GGNCC | 7 cut(s) | 26, 88, 151, 152, 633, 853, 1255 |
| SbfI | CCTGCAGG | 1 cut(s) | 87 |
| SchI | GAGTC | 4 cut(s) | 44, 683, 800, 1201 |
| ScrFI | CCNGG | 4 cut(s) | 98, 160, 631, 712 |
| SdaI | CCTGCAGG | 1 cut(s) | 87 |
| SduI | GDGCHC | 3 cut(s) | 155, 832, 1783 |
| SfaNI | GCATC | 5 cut(s) | 185, 658, 1681, 1867, 1925 |
| SfcI | CTRYAG | 3 cut(s) | 83, 1590, 1686 |
| SinI | GGWCC | 3 cut(s) | 88, 853, 1255 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 2 cut(s) | 1244, 1567 |
| SmoI | CTYRAG | 2 cut(s) | 1244, 1567 |
| SnaBI | TACGTA | 1 cut(s) | 1725 |
| SphI | GCATGC | 1 cut(s) | 1811 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 87 |
| SspI | AATATT | 1 cut(s) | 718 |
| SspMI | CTAG | 6 cut(s) | 462, 995, 1067, 1775, 1983, 2036 |
| SstI | GAGCTC | 1 cut(s) | 1783 |
| StyD4I | CCNGG | 4 cut(s) | 96, 158, 629, 710 |
| StyI | CCWWGG | 1 cut(s) | 17 |
| TaaI | ACNGT | 7 cut(s) | 232, 292, 454, 732, 906, 1034, 1561 |
| TaiI | ACGT | 8 cut(s) | 186, 561, 975, 1311, 1330, 1413, 1432, 1727 |
| TaqI | TCGA | 5 cut(s) | 93, 123, 564, 1092, 1146 |
| TaqII | GACCGA | 1 cut(s) | 1272 |
| TatI | WGTACW | 1 cut(s) | 814 |
| TauI | GCSGC | 5 cut(s) | 27, 104, 121, 213, 298 |
| TfiI | GAWTC | 5 cut(s) | 414, 1387, 1489, 1621, 1871 |
| Tru1I | TTAA | 7 cut(s) | 474, 480, 489, 684, 908, 1245, 1650 |
| Tru9I | TTAA | 7 cut(s) | 474, 480, 489, 684, 908, 1245, 1650 |
| TseFI | GTSAC | 3 cut(s) | 299, 900, 1505 |
| TseI | GCWGC | 8 cut(s) | 72, 145, 446, 1534, 1549, 1598, 1804, 1938 |
| Tsp45I | GTSAC | 3 cut(s) | 299, 900, 1505 |
| TspDTI | ATGAA | 3 cut(s) | 1127, 1529, 2025 |
| Tth111I | GACNNNGTC | 1 cut(s) | 560 |
| Vha464I | CTTAAG | 1 cut(s) | 1244 |
| VpaK11BI | GGWCC | 3 cut(s) | 88, 853, 1255 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1973 |
| XapI | RAATTY | 4 cut(s) | 377, 602, 1680, 2023 |
| XceI | RCATGY | 3 cut(s) | 836, 1736, 1811 |
| XmiI | GTMKAC | 3 cut(s) | 1029, 1303, 1405 |
| XspI | CTAG | 6 cut(s) | 462, 995, 1067, 1775, 1983, 2036 |